Wall clock time and date at job start Tue Mar 31 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47602 * 2 1 4 4 C 1.52995 * 109.47328 * 186.04053 * 3 2 1 5 5 C 1.53005 * 109.47299 * 157.67697 * 4 3 2 6 6 C 1.52998 * 109.47575 * 66.03610 * 3 2 1 7 7 H 1.09005 * 109.46747 * 300.25604 * 6 3 2 8 8 N 1.46895 * 109.46860 * 60.25017 * 6 3 2 9 9 C 1.46898 * 111.00496 * 261.62256 * 8 6 3 10 10 C 1.52995 * 109.47489 * 185.99507 * 9 8 6 11 11 C 1.53000 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47275 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99871 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00222 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99818 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47138 * 90.00019 * 16 14 12 18 18 H 1.48501 * 109.46851 * 210.00225 * 16 14 12 19 19 H 1.48503 * 109.47238 * 330.00146 * 16 14 12 20 20 C 1.50699 * 109.47486 * 180.25477 * 6 3 2 21 21 C 1.38233 * 119.99674 * 253.98141 * 20 6 3 22 22 C 1.38239 * 119.99837 * 179.78168 * 21 20 6 23 23 C 1.38232 * 119.99811 * 0.44884 * 22 21 20 24 24 C 1.38237 * 120.00129 * 359.80230 * 23 22 21 25 25 C 1.38232 * 120.00159 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46958 * 296.46122 * 1 2 3 27 27 H 1.09002 * 109.46571 * 56.46042 * 1 2 3 28 28 H 1.09003 * 109.47650 * 176.45857 * 1 2 3 29 29 H 1.09005 * 109.47389 * 239.99053 * 2 1 3 30 30 H 1.09002 * 109.46874 * 119.99574 * 2 1 3 31 31 H 1.09005 * 109.46488 * 306.03439 * 3 2 1 32 32 H 1.09002 * 109.47255 * 277.67420 * 4 3 2 33 33 H 1.09005 * 109.47609 * 37.67853 * 4 3 2 34 34 H 1.09002 * 109.46968 * 175.69718 * 5 4 3 35 35 H 1.09001 * 109.46898 * 295.69388 * 5 4 3 36 36 H 1.08995 * 109.47274 * 55.69575 * 5 4 3 37 37 H 1.00897 * 111.00355 * 25.57841 * 8 6 3 38 38 H 1.08995 * 109.47452 * 305.99986 * 9 8 6 39 39 H 1.09007 * 109.46816 * 65.99264 * 9 8 6 40 40 H 1.09002 * 109.47124 * 299.99992 * 10 9 8 41 41 H 1.08994 * 109.47625 * 60.00021 * 10 9 8 42 42 H 1.09001 * 109.47255 * 299.99709 * 11 10 9 43 43 H 1.08998 * 109.47666 * 59.99545 * 11 10 9 44 44 H 0.97008 * 120.00194 * 179.97438 * 15 14 12 45 45 H 1.07994 * 120.00113 * 359.97438 * 21 20 6 46 46 H 1.08000 * 120.00055 * 180.26888 * 22 21 20 47 47 H 1.08002 * 120.00055 * 179.83336 * 23 22 21 48 48 H 1.08003 * 120.00212 * 179.97438 * 24 23 22 49 49 H 1.07998 * 120.00555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5625 1.4450 -0.1518 5 6 4.0180 2.7987 -0.7005 6 6 1.6578 2.1186 1.3181 7 1 0.5734 2.1128 1.4283 8 7 2.2676 1.3889 2.4376 9 6 1.3033 0.4674 3.0531 10 6 1.9244 -0.1617 4.3018 11 6 0.9202 -1.1219 4.9425 12 6 1.5322 -1.7420 6.1721 13 1 2.5371 -1.4780 6.4670 14 6 0.8093 -2.6464 6.9208 15 7 -0.4141 -2.9683 6.5615 16 14 1.5682 -3.4156 8.4445 17 1 1.2657 -2.5713 9.6282 18 1 1.0026 -4.7736 8.6475 19 1 3.0396 -3.5132 8.2693 20 6 2.1548 3.5413 1.3155 21 6 3.2503 3.8921 2.0822 22 6 3.7090 5.1961 2.0764 23 6 3.0665 6.1513 1.3111 24 6 1.9679 5.8016 0.5484 25 6 1.5120 4.4966 0.5506 26 1 -0.3633 0.4579 0.9200 27 1 -0.3632 0.5678 -0.8566 28 1 -0.3634 -1.0257 -0.0635 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5912 1.9864 -0.8311 32 1 4.0248 1.2727 0.8202 33 1 3.8603 0.6548 -0.8410 34 1 5.1071 2.8281 -0.7367 35 1 3.6172 2.9372 -1.7046 36 1 3.6544 3.5949 -0.0510 37 1 3.0975 0.8981 2.1402 38 1 0.4035 1.0158 3.3318 39 1 1.0450 -0.3168 2.3414 40 1 2.8242 -0.7102 4.0232 41 1 2.1828 0.6224 5.0135 42 1 0.0202 -0.5738 5.2211 43 1 0.6622 -1.9060 4.2306 44 1 -0.9227 -3.6049 7.0879 45 1 3.7496 3.1467 2.6833 46 1 4.5675 5.4693 2.6720 47 1 3.4232 7.1707 1.3086 48 1 1.4657 6.5480 -0.0493 49 1 0.6534 4.2235 -0.0449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179789807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:43 Heat of formation + Delta-G solvation = 1.310679 kcal Electronic energy + Delta-G solvation = -23711.687116 eV Core-core repulsion = 20637.565658 eV Total energy + Delta-G solvation = -3074.121458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30746 -37.89978 -34.85972 -33.09699 -32.47488 -31.55310 -30.86209 -30.11561 -27.57357 -25.77838 -24.63102 -22.86038 -22.05840 -21.88603 -21.37132 -20.19700 -19.23489 -16.86378 -16.75067 -16.16404 -15.39979 -15.22332 -14.47218 -14.42650 -14.28373 -14.08603 -13.71954 -13.47533 -13.27154 -12.91962 -12.81454 -12.59376 -12.38075 -12.27350 -12.11858 -11.74309 -11.59426 -11.33408 -11.09386 -10.97085 -10.86836 -10.80064 -10.70611 -10.62928 -10.52027 -10.40843 -10.26592 -9.65380 -9.30432 -9.02957 -8.84402 -8.43216 -8.31752 -8.09632 -5.97098 -3.98877 1.41628 1.49343 3.33973 3.39962 3.43539 3.84267 4.34081 4.50330 4.63821 4.73959 4.78682 4.98962 5.02327 5.12548 5.20335 5.24733 5.37249 5.38800 5.40970 5.44618 5.49342 5.59149 5.65471 5.72546 5.81368 5.87511 5.90279 5.94919 5.97946 6.05152 6.06222 6.12925 6.14653 6.25069 6.29063 6.34863 6.45637 6.52851 6.61041 6.66782 6.76390 6.88637 7.07366 7.18199 7.40947 7.65822 7.71923 7.87415 8.03689 8.47266 9.08398 9.65002 11.14324 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018691 B = 0.003486 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.659078 B = 8029.814154 C = 8743.676825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.129 4.129 3 C -0.106 4.106 4 C -0.119 4.119 5 C -0.169 4.169 6 C 0.125 3.875 7 H 0.085 0.915 8 N -0.682 5.682 9 C 0.052 3.948 10 C -0.106 4.106 11 C 0.023 3.977 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.053 4.053 21 C -0.090 4.090 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.126 4.126 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.339 0.661 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 45 H 0.135 0.865 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 14.517 -16.905 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.167 4.167 3 C -0.126 4.126 4 C -0.157 4.157 5 C -0.226 4.226 6 C 0.014 3.986 7 H 0.103 0.897 8 N -0.315 5.315 9 C -0.076 4.076 10 C -0.144 4.144 11 C -0.015 4.015 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.054 4.054 21 C -0.108 4.108 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.145 4.145 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.152 0.848 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.620 14.883 -16.388 22.840 hybrid contribution 0.219 -1.140 0.176 1.174 sum 5.839 13.743 -16.212 22.041 Atomic orbital electron populations 1.21856 0.95657 1.01942 1.01822 1.21774 0.96347 0.96012 1.02527 1.21830 0.96235 0.96302 0.98228 1.21577 0.94912 0.97872 1.01346 1.22212 1.00519 0.98624 1.01217 1.20484 0.98697 0.90047 0.89360 0.89709 1.60668 1.08899 1.32210 1.29690 1.22382 0.94938 0.93665 0.96625 1.21599 0.99389 0.98667 0.94708 1.19055 0.93955 0.93403 0.95080 1.21262 1.00406 1.24187 1.09736 0.92722 1.25022 0.94908 0.96759 0.97818 1.69967 1.09969 1.34256 1.39437 0.86613 0.79450 0.78560 0.83492 1.20678 1.21287 1.19891 1.19816 0.95104 0.94894 0.95583 1.21127 0.95971 0.96061 0.97691 1.21197 1.00143 0.93651 0.99469 1.21066 0.96693 0.99159 0.98077 1.20999 0.97235 0.96092 0.99897 1.20921 1.00315 0.93132 1.00083 0.92179 0.93055 0.92536 0.92008 0.90961 0.90846 0.91473 0.92271 0.93464 0.93570 0.90101 0.83976 0.91737 0.94481 0.93791 0.92693 0.96693 0.96864 0.93084 0.84768 0.86506 0.86776 0.86668 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.05 37.16 0.34 -1.40 16 2 C -0.13 -1.43 4.80 -26.74 -0.13 -1.56 16 3 C -0.11 -1.11 1.74 -90.63 -0.16 -1.26 16 4 C -0.12 -1.21 5.15 -26.73 -0.14 -1.34 16 5 C -0.17 -1.68 9.44 37.16 0.35 -1.33 16 6 C 0.12 1.49 2.01 -68.87 -0.14 1.35 16 7 H 0.08 1.08 6.06 -51.93 -0.31 0.77 16 8 N -0.68 -9.36 4.49 -107.96 -0.48 -9.84 16 9 C 0.05 0.86 4.48 -3.83 -0.02 0.85 16 10 C -0.11 -2.17 5.46 -26.73 -0.15 -2.31 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 13 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.05 -0.62 2.97 -104.62 -0.31 -0.93 16 21 C -0.09 -1.08 7.80 -39.58 -0.31 -1.39 16 22 C -0.13 -1.37 9.87 -39.58 -0.39 -1.76 16 23 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 24 C -0.12 -1.24 10.04 -39.58 -0.40 -1.64 16 25 C -0.13 -1.35 8.90 -39.58 -0.35 -1.71 16 26 H 0.06 0.73 5.75 -51.93 -0.30 0.43 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.63 8.00 -51.93 -0.42 0.22 16 30 H 0.07 0.92 5.24 -51.93 -0.27 0.64 16 31 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.07 0.72 5.85 -51.93 -0.30 0.41 16 33 H 0.06 0.57 7.85 -51.93 -0.41 0.16 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.86 3.06 -51.93 -0.16 0.70 16 37 H 0.34 4.43 5.74 -39.29 -0.23 4.20 16 38 H 0.06 1.13 7.92 -51.93 -0.41 0.71 16 39 H 0.04 0.61 4.66 -51.93 -0.24 0.36 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 1.69 7.02 -52.49 -0.37 1.32 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -29.69 368.37 -10.41 -40.10 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.44 Total: 3.10 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -2.75 Total: -29.33 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.25 Total: -36.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.69 -10.41 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179789807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.409 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds