Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47602 * 2 1 4 4 C 1.52995 * 109.47328 * 186.04053 * 3 2 1 5 5 C 1.53005 * 109.47299 * 157.67697 * 4 3 2 6 6 C 1.52998 * 109.47575 * 66.03610 * 3 2 1 7 7 H 1.09005 * 109.46747 * 300.25604 * 6 3 2 8 8 N 1.46895 * 109.46860 * 60.25017 * 6 3 2 9 9 C 1.46898 * 111.00496 * 261.62256 * 8 6 3 10 10 C 1.52995 * 109.47489 * 185.99507 * 9 8 6 11 11 C 1.53000 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47275 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99871 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00222 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99818 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47138 * 90.00019 * 16 14 12 18 18 H 1.48501 * 109.46851 * 210.00225 * 16 14 12 19 19 H 1.48503 * 109.47238 * 330.00146 * 16 14 12 20 20 C 1.50699 * 109.47486 * 180.25477 * 6 3 2 21 21 C 1.38233 * 119.99674 * 253.98141 * 20 6 3 22 22 C 1.38239 * 119.99837 * 179.78168 * 21 20 6 23 23 C 1.38232 * 119.99811 * 0.44884 * 22 21 20 24 24 C 1.38237 * 120.00129 * 359.80230 * 23 22 21 25 25 C 1.38232 * 120.00159 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.46958 * 296.46122 * 1 2 3 27 27 H 1.09002 * 109.46571 * 56.46042 * 1 2 3 28 28 H 1.09003 * 109.47650 * 176.45857 * 1 2 3 29 29 H 1.09005 * 109.47389 * 239.99053 * 2 1 3 30 30 H 1.09002 * 109.46874 * 119.99574 * 2 1 3 31 31 H 1.09005 * 109.46488 * 306.03439 * 3 2 1 32 32 H 1.09002 * 109.47255 * 277.67420 * 4 3 2 33 33 H 1.09005 * 109.47609 * 37.67853 * 4 3 2 34 34 H 1.09002 * 109.46968 * 175.69718 * 5 4 3 35 35 H 1.09001 * 109.46898 * 295.69388 * 5 4 3 36 36 H 1.08995 * 109.47274 * 55.69575 * 5 4 3 37 37 H 1.00897 * 111.00355 * 25.57841 * 8 6 3 38 38 H 1.08995 * 109.47452 * 305.99986 * 9 8 6 39 39 H 1.09007 * 109.46816 * 65.99264 * 9 8 6 40 40 H 1.09002 * 109.47124 * 299.99992 * 10 9 8 41 41 H 1.08994 * 109.47625 * 60.00021 * 10 9 8 42 42 H 1.09001 * 109.47255 * 299.99709 * 11 10 9 43 43 H 1.08998 * 109.47666 * 59.99545 * 11 10 9 44 44 H 0.97008 * 120.00194 * 179.97438 * 15 14 12 45 45 H 1.07994 * 120.00113 * 359.97438 * 21 20 6 46 46 H 1.08000 * 120.00055 * 180.26888 * 22 21 20 47 47 H 1.08002 * 120.00055 * 179.83336 * 23 22 21 48 48 H 1.08003 * 120.00212 * 179.97438 * 24 23 22 49 49 H 1.07998 * 120.00555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5625 1.4450 -0.1518 5 6 4.0180 2.7987 -0.7005 6 6 1.6578 2.1186 1.3181 7 1 0.5734 2.1128 1.4283 8 7 2.2676 1.3889 2.4376 9 6 1.3033 0.4674 3.0531 10 6 1.9244 -0.1617 4.3018 11 6 0.9202 -1.1219 4.9425 12 6 1.5322 -1.7420 6.1721 13 1 2.5371 -1.4780 6.4670 14 6 0.8093 -2.6464 6.9208 15 7 -0.4141 -2.9683 6.5615 16 14 1.5682 -3.4156 8.4445 17 1 1.2657 -2.5713 9.6282 18 1 1.0026 -4.7736 8.6475 19 1 3.0396 -3.5132 8.2693 20 6 2.1548 3.5413 1.3155 21 6 3.2503 3.8921 2.0822 22 6 3.7090 5.1961 2.0764 23 6 3.0665 6.1513 1.3111 24 6 1.9679 5.8016 0.5484 25 6 1.5120 4.4966 0.5506 26 1 -0.3633 0.4579 0.9200 27 1 -0.3632 0.5678 -0.8566 28 1 -0.3634 -1.0257 -0.0635 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5912 1.9864 -0.8311 32 1 4.0248 1.2727 0.8202 33 1 3.8603 0.6548 -0.8410 34 1 5.1071 2.8281 -0.7367 35 1 3.6172 2.9372 -1.7046 36 1 3.6544 3.5949 -0.0510 37 1 3.0975 0.8981 2.1402 38 1 0.4035 1.0158 3.3318 39 1 1.0450 -0.3168 2.3414 40 1 2.8242 -0.7102 4.0232 41 1 2.1828 0.6224 5.0135 42 1 0.0202 -0.5738 5.2211 43 1 0.6622 -1.9060 4.2306 44 1 -0.9227 -3.6049 7.0879 45 1 3.7496 3.1467 2.6833 46 1 4.5675 5.4693 2.6720 47 1 3.4232 7.1707 1.3086 48 1 1.4657 6.5480 -0.0493 49 1 0.6534 4.2235 -0.0449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179789807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -12.467688 kcal Electronic energy + Delta-G solvation = -23712.284590 eV Core-core repulsion = 20637.565658 eV Total energy + Delta-G solvation = -3074.718933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21226 -38.81983 -36.42828 -34.82170 -33.44598 -32.84653 -31.78546 -31.30379 -28.81807 -27.29073 -25.68375 -24.31517 -23.07155 -22.87257 -22.22630 -21.85218 -20.21352 -18.50693 -17.72984 -17.65387 -16.56037 -16.30152 -16.11005 -15.65384 -15.19765 -15.10422 -14.87948 -14.61440 -14.23860 -14.07765 -13.94511 -13.70611 -13.54756 -13.48451 -13.25712 -13.12236 -12.98339 -12.71532 -12.46283 -12.36567 -12.31638 -11.95228 -11.77849 -11.68570 -11.54480 -11.51690 -11.40589 -11.35583 -11.21165 -10.99635 -10.54692 -9.66100 -9.31142 -9.21279 -8.19589 -6.30339 0.59875 0.67381 1.39741 1.41176 1.52285 2.41161 3.01533 3.13510 3.23602 3.76426 3.84627 3.88736 4.19357 4.23848 4.25947 4.31824 4.36012 4.38805 4.45546 4.53552 4.57862 4.62183 4.64708 4.74692 4.79678 4.83135 4.90412 4.98576 5.01075 5.09289 5.12023 5.14385 5.19910 5.24152 5.24990 5.28130 5.33266 5.41839 5.45794 5.52689 5.57979 5.72571 5.77083 5.79025 5.83629 5.87723 6.18556 6.26633 6.31478 6.54337 6.86612 7.38775 8.92244 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018691 B = 0.003486 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.659078 B = 8029.814154 C = 8743.676825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.096 4.096 4 C -0.117 4.117 5 C -0.166 4.166 6 C 0.128 3.872 7 H 0.076 0.924 8 N -0.680 5.680 9 C 0.069 3.931 10 C -0.091 4.091 11 C 0.027 3.973 12 C -0.542 4.542 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.062 4.062 21 C -0.106 4.106 22 C -0.134 4.134 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.133 4.133 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.344 0.656 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.048 0.952 42 H -0.012 1.012 43 H -0.008 1.008 44 H 0.263 0.737 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 15.591 -17.673 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.116 4.116 4 C -0.154 4.154 5 C -0.223 4.223 6 C 0.018 3.982 7 H 0.094 0.906 8 N -0.313 5.313 9 C -0.060 4.060 10 C -0.129 4.129 11 C -0.010 4.010 12 C -0.580 4.580 13 H 0.076 0.924 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.063 4.063 21 C -0.124 4.124 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.151 4.151 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.007 0.993 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.154 0.846 48 H 0.156 0.844 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.674 15.971 -17.169 24.380 hybrid contribution -0.123 -1.425 0.381 1.480 sum 6.551 14.546 -16.788 23.159 Atomic orbital electron populations 1.21846 0.95795 1.01756 1.01814 1.21750 0.96200 0.96365 1.02142 1.21736 0.96580 0.95687 0.97562 1.21547 0.94420 0.98372 1.01094 1.22173 1.00658 0.98129 1.01313 1.20457 0.98007 0.90392 0.89324 0.90642 1.60562 1.08397 1.31303 1.31011 1.22042 0.94730 0.93989 0.95236 1.21349 0.98169 0.97411 0.95946 1.18947 0.94181 0.93494 0.94407 1.21701 1.00782 1.24704 1.10830 0.92383 1.25972 0.95328 0.97233 1.01293 1.70097 1.11421 1.34893 1.40960 0.85466 0.78960 0.77626 0.79115 1.19836 1.20652 1.18733 1.19773 0.95482 0.94679 0.96357 1.21106 0.96526 0.96537 0.98251 1.21396 1.00657 0.93379 0.99805 1.21367 0.96462 1.00025 0.97395 1.21308 0.97098 0.96228 0.99714 1.21106 1.00602 0.93363 1.00051 0.93634 0.91351 0.93068 0.90795 0.92864 0.89804 0.92303 0.91578 0.93266 0.92990 0.90641 0.83405 0.92810 0.94182 0.93298 0.93343 0.99330 0.99011 0.92805 0.85999 0.85349 0.84629 0.84439 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.05 71.98 0.65 -2.73 16 2 C -0.13 -2.71 4.80 30.59 0.15 -2.56 16 3 C -0.10 -1.89 1.74 -10.80 -0.02 -1.90 16 4 C -0.12 -2.20 5.15 30.59 0.16 -2.05 16 5 C -0.17 -3.02 9.44 71.98 0.68 -2.34 16 6 C 0.13 3.00 2.01 44.17 0.09 3.09 16 7 H 0.08 1.92 6.06 -2.38 -0.01 1.91 16 8 N -0.68 -18.75 4.49 -495.47 -2.22 -20.98 16 9 C 0.07 2.35 4.48 86.30 0.39 2.73 16 10 C -0.09 -3.81 5.46 30.59 0.17 -3.65 16 11 C 0.03 1.47 4.97 29.85 0.15 1.62 16 12 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 16 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 C -0.06 -1.40 2.97 -19.87 -0.06 -1.46 16 21 C -0.11 -2.47 7.80 22.27 0.17 -2.30 16 22 C -0.13 -2.73 9.87 22.27 0.22 -2.51 16 23 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 24 C -0.13 -2.21 10.04 22.27 0.22 -1.99 16 25 C -0.13 -2.62 8.90 22.27 0.20 -2.42 16 26 H 0.04 1.11 5.75 -2.39 -0.01 1.10 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.40 8.00 -2.38 -0.02 1.38 16 30 H 0.05 1.34 5.24 -2.39 -0.01 1.33 16 31 H 0.08 1.52 7.89 -2.38 -0.02 1.50 16 32 H 0.06 1.21 5.85 -2.39 -0.01 1.20 16 33 H 0.07 1.16 7.85 -2.38 -0.02 1.15 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.49 3.06 -2.39 -0.01 1.48 16 37 H 0.34 8.98 5.74 -89.70 -0.52 8.46 16 38 H 0.05 1.95 7.92 -2.39 -0.02 1.93 16 39 H 0.04 1.35 4.66 -2.38 -0.01 1.34 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 42 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 45 H 0.12 3.08 7.02 -2.91 -0.02 3.06 16 46 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 47 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 48 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -63.93 368.37 4.56 -59.37 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.39 Total: 23.51 kcal Atomic # 6 Polarization: -55.64 SS G_CDS: 4.08 Total: -51.56 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.94 Total: -78.30 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.93 4.56 -59.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179789807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.903 kcal (2) G-P(sol) polarization free energy of solvation -63.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds