Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47036 * 2 1 4 4 C 1.53004 * 109.47199 * 239.99778 * 2 1 3 5 5 C 1.52999 * 109.47172 * 119.99925 * 2 1 3 6 6 C 1.53003 * 109.47213 * 53.35893 * 5 2 1 7 7 H 1.08999 * 109.46996 * 307.64274 * 6 5 2 8 8 N 1.46902 * 109.47201 * 187.63702 * 6 5 2 9 9 C 1.46894 * 110.99789 * 87.16820 * 8 6 5 10 10 C 1.52999 * 109.47090 * 183.65557 * 9 8 6 11 11 C 1.52998 * 109.47364 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47235 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00111 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00363 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00619 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99462 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46980 * 90.00344 * 16 14 12 18 18 H 1.48501 * 109.46841 * 209.99580 * 16 14 12 19 19 H 1.48496 * 109.47357 * 330.00177 * 16 14 12 20 20 C 1.50700 * 109.46979 * 67.63705 * 6 5 2 21 21 C 1.38234 * 119.99724 * 63.98764 * 20 6 5 22 22 C 1.38242 * 119.99660 * 179.78878 * 21 20 6 23 23 C 1.38235 * 120.00084 * 0.44319 * 22 21 20 24 24 C 1.38239 * 120.00005 * 359.80753 * 23 22 21 25 25 C 1.38230 * 120.00089 * 244.26182 * 20 6 5 26 26 H 1.09003 * 109.47140 * 292.93405 * 1 2 3 27 27 H 1.08999 * 109.46859 * 52.93547 * 1 2 3 28 28 H 1.08998 * 109.46845 * 172.93300 * 1 2 3 29 29 H 1.09000 * 109.46941 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46801 * 300.00084 * 3 2 1 31 31 H 1.09003 * 109.46743 * 60.00044 * 3 2 1 32 32 H 1.08995 * 109.46781 * 318.28451 * 4 2 1 33 33 H 1.09003 * 109.46783 * 78.27826 * 4 2 1 34 34 H 1.08997 * 109.47047 * 198.27694 * 4 2 1 35 35 H 1.09002 * 109.47323 * 293.36640 * 5 2 1 36 36 H 1.08998 * 109.47445 * 173.35902 * 5 2 1 37 37 H 1.00897 * 111.00053 * 323.21357 * 8 6 5 38 38 H 1.09001 * 109.46987 * 303.64810 * 9 8 6 39 39 H 1.08995 * 109.47560 * 63.65132 * 9 8 6 40 40 H 1.09003 * 109.47115 * 299.99505 * 10 9 8 41 41 H 1.09000 * 109.47733 * 59.99481 * 10 9 8 42 42 H 1.09001 * 109.46964 * 299.99407 * 11 10 9 43 43 H 1.09001 * 109.47090 * 59.99955 * 11 10 9 44 44 H 0.96994 * 120.00620 * 180.02562 * 15 14 12 45 45 H 1.07998 * 120.00216 * 359.97438 * 21 20 6 46 46 H 1.08001 * 119.99860 * 180.27314 * 22 21 20 47 47 H 1.07999 * 120.00020 * 179.83766 * 23 22 21 48 48 H 1.07993 * 119.99794 * 180.02562 * 24 23 22 49 49 H 1.08004 * 120.00217 * 359.97438 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.3984 -2.1075 1.3355 7 1 0.3155 -2.0122 1.2562 8 7 1.7427 -2.7273 2.6221 9 6 0.7834 -2.3415 3.6656 10 6 1.2248 -2.9305 5.0069 11 6 0.2261 -2.5282 6.0939 12 6 0.6604 -3.1089 7.4150 13 1 1.5588 -3.7055 7.4734 14 6 -0.0889 -2.8784 8.5492 15 7 0.2904 -3.3847 9.7022 16 14 -1.6431 -1.8470 8.4481 17 1 -2.8039 -2.7277 8.1610 18 1 -1.8591 -1.1493 9.7410 19 1 -1.5020 -0.8443 7.3619 20 6 1.9105 -2.9689 0.2100 21 6 3.2509 -3.3011 0.1487 22 6 3.7199 -4.0949 -0.8814 23 6 2.8501 -4.5489 -1.8551 24 6 1.5105 -4.2125 -1.7966 25 6 1.0408 -3.4222 -0.7642 26 1 -0.3633 0.4005 0.9465 27 1 -0.3633 0.6194 -0.8200 28 1 -0.3633 -1.0199 -0.1264 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.4379 -1.6126 -1.4253 33 1 1.9643 -0.0559 -2.1093 34 1 3.0812 -1.0090 -1.1030 35 1 1.7769 -0.1434 2.1353 36 1 3.1235 -0.8253 1.1919 37 1 2.6860 -2.4950 2.8944 38 1 0.7459 -1.2548 3.7408 39 1 -0.2051 -2.7224 3.4092 40 1 1.2623 -4.0173 4.9318 41 1 2.2134 -2.5497 5.2634 42 1 0.1889 -1.4414 6.1690 43 1 -0.7627 -2.9088 5.8377 44 1 -0.2370 -3.2229 10.5000 45 1 3.9313 -2.9429 0.9071 46 1 4.7664 -4.3580 -0.9269 47 1 3.2169 -5.1669 -2.6613 48 1 0.8309 -4.5675 -2.5571 49 1 -0.0057 -3.1594 -0.7185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179799419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -0.687756 kcal Electronic energy + Delta-G solvation = -23467.040787 eV Core-core repulsion = 20392.832671 eV Total energy + Delta-G solvation = -3074.208116 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37353 -37.74931 -36.08798 -33.73204 -32.10106 -31.06816 -30.53480 -28.35756 -27.50419 -27.18576 -26.09124 -23.74538 -22.76598 -21.92159 -20.74050 -19.98427 -18.87681 -17.05586 -16.64298 -15.71733 -15.45908 -15.26162 -14.77774 -14.57080 -14.33167 -14.24917 -13.83681 -13.52101 -13.44462 -13.28552 -13.02549 -12.57400 -12.47823 -12.23087 -12.06221 -11.96057 -11.69733 -11.63433 -11.48938 -11.17005 -11.06241 -10.88279 -10.82871 -10.76280 -10.66568 -10.53288 -9.94455 -9.71634 -9.57790 -9.15373 -8.86331 -8.58840 -8.51541 -8.15973 -6.01862 -3.99524 1.33328 1.37960 3.31966 3.39024 3.42573 3.72387 4.30864 4.47062 4.57164 4.61438 4.69531 4.84933 4.88497 4.96531 5.05593 5.22367 5.24443 5.32048 5.40113 5.42817 5.46323 5.52090 5.54796 5.61785 5.63789 5.73743 5.77593 5.81471 5.83087 5.84813 5.94585 5.99222 6.04881 6.11650 6.19289 6.23404 6.28396 6.43993 6.48027 6.52391 6.58914 6.66490 6.93456 6.96382 7.23887 7.36338 7.46313 7.57885 7.82709 8.57449 9.03789 9.60788 11.11769 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.003445 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.408461 B = 8125.301187 C = 8989.565694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.141 4.141 4 C -0.158 4.158 5 C -0.135 4.135 6 C 0.118 3.882 7 H 0.088 0.912 8 N -0.681 5.681 9 C 0.058 3.942 10 C -0.100 4.100 11 C -0.012 4.012 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.041 4.041 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.115 4.115 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.339 0.661 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 5.271 -26.588 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.199 4.199 4 C -0.214 4.214 5 C -0.174 4.174 6 C 0.008 3.992 7 H 0.106 0.894 8 N -0.310 5.310 9 C -0.071 4.071 10 C -0.138 4.138 11 C -0.050 4.050 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.042 4.042 21 C -0.124 4.124 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.133 4.133 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.448 4.665 -26.511 27.138 hybrid contribution -0.526 1.427 0.321 1.554 sum 2.921 6.092 -26.190 27.048 Atomic orbital electron populations 1.21993 0.94817 1.01790 1.01689 1.20433 0.95500 0.95068 0.95295 1.21899 1.00878 0.95553 1.01526 1.22466 1.01632 1.01132 0.96195 1.22440 1.00671 0.96349 0.97956 1.20665 1.00074 0.89952 0.88488 0.89411 1.60637 1.06552 1.61905 1.01926 1.22181 0.95732 0.97345 0.91804 1.21456 0.99675 1.00759 0.91941 1.19533 0.94656 0.96278 0.94544 1.21157 1.11137 1.32419 0.90935 0.91044 1.25044 0.97670 0.95535 0.95346 1.69915 1.39548 1.45626 0.99322 0.86770 0.83956 0.81109 0.77378 1.20292 1.21444 1.19099 1.19709 0.93454 0.96521 0.94525 1.20883 0.95233 0.98385 0.97862 1.21093 0.99526 0.98211 0.94951 1.21049 0.93763 1.00738 0.99191 1.21045 0.95715 0.98767 0.98560 1.20898 0.99272 0.98299 0.94867 0.92630 0.92836 0.92326 0.92840 0.92848 0.92774 0.90423 0.93728 0.92698 0.91495 0.91546 0.84289 0.95670 0.91533 0.91945 0.93067 0.96885 0.97073 0.92786 0.86509 0.86496 0.86627 0.86473 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 7.67 37.16 0.29 -1.04 16 2 C -0.06 -0.57 0.80 -154.50 -0.12 -0.70 16 3 C -0.14 -1.23 8.39 37.16 0.31 -0.92 16 4 C -0.16 -1.44 7.21 37.16 0.27 -1.17 16 5 C -0.14 -1.39 3.84 -26.73 -0.10 -1.49 16 6 C 0.12 1.35 1.96 -68.86 -0.14 1.22 16 7 H 0.09 1.04 5.46 -51.93 -0.28 0.76 16 8 N -0.68 -9.37 6.06 -107.95 -0.65 -10.03 16 9 C 0.06 0.93 5.47 -3.83 -0.02 0.91 16 10 C -0.10 -2.00 5.38 -26.73 -0.14 -2.14 16 11 C -0.01 -0.29 4.04 -27.89 -0.11 -0.41 16 12 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 13 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 16 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 C -0.04 -0.45 2.84 -104.63 -0.30 -0.75 16 21 C -0.11 -1.13 7.98 -39.58 -0.32 -1.44 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.12 -1.16 10.03 -39.58 -0.40 -1.56 16 25 C -0.11 -1.18 6.83 -39.58 -0.27 -1.46 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.53 5.77 -51.93 -0.30 0.23 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.73 3.72 -51.93 -0.19 0.53 16 33 H 0.04 0.39 8.00 -51.93 -0.42 -0.03 16 34 H 0.05 0.53 6.90 -51.93 -0.36 0.17 16 35 H 0.07 0.75 7.43 -51.93 -0.39 0.37 16 36 H 0.07 0.67 7.27 -51.93 -0.38 0.29 16 37 H 0.34 4.43 8.35 -39.29 -0.33 4.10 16 38 H 0.03 0.39 7.43 -51.93 -0.39 0.01 16 39 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 43 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.12 1.19 7.74 -52.49 -0.41 0.78 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.12 1.09 7.40 -52.48 -0.39 0.70 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -30.77 371.74 -10.05 -40.82 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.83 Total: 1.50 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -2.28 Total: -27.69 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.12 Total: -37.57 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.77 -10.05 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179799419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.135 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds