Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47036 * 2 1 4 4 C 1.53004 * 109.47199 * 239.99778 * 2 1 3 5 5 C 1.52999 * 109.47172 * 119.99925 * 2 1 3 6 6 C 1.53003 * 109.47213 * 53.35893 * 5 2 1 7 7 H 1.08999 * 109.46996 * 307.64274 * 6 5 2 8 8 N 1.46902 * 109.47201 * 187.63702 * 6 5 2 9 9 C 1.46894 * 110.99789 * 87.16820 * 8 6 5 10 10 C 1.52999 * 109.47090 * 183.65557 * 9 8 6 11 11 C 1.52998 * 109.47364 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47235 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00111 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00363 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00619 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99462 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46980 * 90.00344 * 16 14 12 18 18 H 1.48501 * 109.46841 * 209.99580 * 16 14 12 19 19 H 1.48496 * 109.47357 * 330.00177 * 16 14 12 20 20 C 1.50700 * 109.46979 * 67.63705 * 6 5 2 21 21 C 1.38234 * 119.99724 * 63.98764 * 20 6 5 22 22 C 1.38242 * 119.99660 * 179.78878 * 21 20 6 23 23 C 1.38235 * 120.00084 * 0.44319 * 22 21 20 24 24 C 1.38239 * 120.00005 * 359.80753 * 23 22 21 25 25 C 1.38230 * 120.00089 * 244.26182 * 20 6 5 26 26 H 1.09003 * 109.47140 * 292.93405 * 1 2 3 27 27 H 1.08999 * 109.46859 * 52.93547 * 1 2 3 28 28 H 1.08998 * 109.46845 * 172.93300 * 1 2 3 29 29 H 1.09000 * 109.46941 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46801 * 300.00084 * 3 2 1 31 31 H 1.09003 * 109.46743 * 60.00044 * 3 2 1 32 32 H 1.08995 * 109.46781 * 318.28451 * 4 2 1 33 33 H 1.09003 * 109.46783 * 78.27826 * 4 2 1 34 34 H 1.08997 * 109.47047 * 198.27694 * 4 2 1 35 35 H 1.09002 * 109.47323 * 293.36640 * 5 2 1 36 36 H 1.08998 * 109.47445 * 173.35902 * 5 2 1 37 37 H 1.00897 * 111.00053 * 323.21357 * 8 6 5 38 38 H 1.09001 * 109.46987 * 303.64810 * 9 8 6 39 39 H 1.08995 * 109.47560 * 63.65132 * 9 8 6 40 40 H 1.09003 * 109.47115 * 299.99505 * 10 9 8 41 41 H 1.09000 * 109.47733 * 59.99481 * 10 9 8 42 42 H 1.09001 * 109.46964 * 299.99407 * 11 10 9 43 43 H 1.09001 * 109.47090 * 59.99955 * 11 10 9 44 44 H 0.96994 * 120.00620 * 180.02562 * 15 14 12 45 45 H 1.07998 * 120.00216 * 359.97438 * 21 20 6 46 46 H 1.08001 * 119.99860 * 180.27314 * 22 21 20 47 47 H 1.07999 * 120.00020 * 179.83766 * 23 22 21 48 48 H 1.07993 * 119.99794 * 180.02562 * 24 23 22 49 49 H 1.08004 * 120.00217 * 359.97438 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.3984 -2.1075 1.3355 7 1 0.3155 -2.0122 1.2562 8 7 1.7427 -2.7273 2.6221 9 6 0.7834 -2.3415 3.6656 10 6 1.2248 -2.9305 5.0069 11 6 0.2261 -2.5282 6.0939 12 6 0.6604 -3.1089 7.4150 13 1 1.5588 -3.7055 7.4734 14 6 -0.0889 -2.8784 8.5492 15 7 0.2904 -3.3847 9.7022 16 14 -1.6431 -1.8470 8.4481 17 1 -2.8039 -2.7277 8.1610 18 1 -1.8591 -1.1493 9.7410 19 1 -1.5020 -0.8443 7.3619 20 6 1.9105 -2.9689 0.2100 21 6 3.2509 -3.3011 0.1487 22 6 3.7199 -4.0949 -0.8814 23 6 2.8501 -4.5489 -1.8551 24 6 1.5105 -4.2125 -1.7966 25 6 1.0408 -3.4222 -0.7642 26 1 -0.3633 0.4005 0.9465 27 1 -0.3633 0.6194 -0.8200 28 1 -0.3633 -1.0199 -0.1264 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.4379 -1.6126 -1.4253 33 1 1.9643 -0.0559 -2.1093 34 1 3.0812 -1.0090 -1.1030 35 1 1.7769 -0.1434 2.1353 36 1 3.1235 -0.8253 1.1919 37 1 2.6860 -2.4950 2.8944 38 1 0.7459 -1.2548 3.7408 39 1 -0.2051 -2.7224 3.4092 40 1 1.2623 -4.0173 4.9318 41 1 2.2134 -2.5497 5.2634 42 1 0.1889 -1.4414 6.1690 43 1 -0.7627 -2.9088 5.8377 44 1 -0.2370 -3.2229 10.5000 45 1 3.9313 -2.9429 0.9071 46 1 4.7664 -4.3580 -0.9269 47 1 3.2169 -5.1669 -2.6613 48 1 0.8309 -4.5675 -2.5571 49 1 -0.0057 -3.1594 -0.7185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179799419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -16.958686 kcal Electronic energy + Delta-G solvation = -23467.746348 eV Core-core repulsion = 20392.832671 eV Total energy + Delta-G solvation = -3074.913677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17505 -38.54560 -37.28148 -35.44857 -33.79100 -31.93748 -31.66762 -29.48131 -28.22123 -27.89414 -27.61866 -24.76920 -23.88640 -23.09533 -21.99123 -21.30551 -19.63651 -18.92284 -17.75116 -16.72078 -16.51189 -16.25627 -16.17950 -15.61883 -15.33419 -15.29293 -14.93727 -14.80047 -14.35034 -14.28186 -14.14113 -13.94382 -13.58842 -13.42867 -13.19598 -12.89792 -12.79161 -12.69693 -12.53016 -12.40828 -12.24134 -11.92919 -11.79447 -11.79037 -11.69023 -11.50900 -11.48670 -11.36931 -11.30806 -11.17780 -10.76463 -9.61375 -9.43896 -9.17433 -8.29406 -6.33778 0.57409 0.62876 1.35892 1.37744 1.49924 2.36386 2.92812 3.05820 3.32337 3.77575 3.81476 3.93051 4.07203 4.13040 4.22430 4.26672 4.31040 4.37062 4.44235 4.48179 4.65743 4.66725 4.70922 4.74177 4.80423 4.82704 4.89395 4.93220 4.96000 5.00001 5.05458 5.08847 5.12773 5.13091 5.22948 5.25793 5.29476 5.39520 5.50994 5.51627 5.56831 5.61127 5.66427 5.70638 5.74708 5.80634 6.14380 6.24529 6.30081 6.47825 6.74611 7.30809 8.87712 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.003445 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.408461 B = 8125.301187 C = 8989.565694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.153 4.153 5 C -0.129 4.129 6 C 0.123 3.877 7 H 0.086 0.914 8 N -0.687 5.687 9 C 0.073 3.927 10 C -0.091 4.091 11 C -0.009 4.009 12 C -0.534 4.534 13 H 0.028 0.972 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.245 1.245 20 C -0.051 4.051 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.124 4.124 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.342 0.658 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.266 0.734 45 H 0.115 0.885 46 H 0.131 0.869 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 6.348 -28.980 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.209 4.209 5 C -0.168 4.168 6 C 0.014 3.986 7 H 0.104 0.896 8 N -0.317 5.317 9 C -0.056 4.056 10 C -0.129 4.129 11 C -0.047 4.047 12 C -0.572 4.572 13 H 0.047 0.953 14 C -0.195 4.195 15 N -0.594 5.594 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.168 1.168 20 C -0.052 4.052 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.142 4.142 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.160 0.840 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.133 0.867 46 H 0.149 0.851 47 H 0.154 0.846 48 H 0.155 0.845 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.273 5.741 -28.931 29.583 hybrid contribution -0.044 0.998 1.051 1.450 sum 2.229 6.739 -27.880 28.769 Atomic orbital electron populations 1.21990 0.94571 1.01972 1.01731 1.20401 0.95657 0.95219 0.94694 1.21889 1.00906 0.95181 1.01788 1.22405 1.01126 1.01151 0.96243 1.22362 1.00617 0.95646 0.98186 1.20638 1.00039 0.90549 0.87372 0.89609 1.60578 1.06282 1.62540 1.02270 1.21889 0.96084 0.97373 0.90245 1.21273 0.98532 0.99955 0.93169 1.19477 0.95835 0.96219 0.93161 1.21525 1.09880 1.32095 0.93694 0.95329 1.26080 1.01774 0.96998 0.94692 1.70075 1.41504 1.47480 1.00369 0.85601 0.78907 0.79620 0.78162 1.19105 1.20940 1.16822 1.19667 0.93749 0.97099 0.94695 1.20989 0.95293 0.99007 0.98389 1.21337 1.00523 0.97957 0.94802 1.21357 0.93748 1.00526 0.99471 1.21330 0.96229 0.98238 0.98681 1.21065 0.99625 0.98498 0.95032 0.93230 0.91932 0.92301 0.92828 0.92006 0.93091 0.90509 0.93199 0.93399 0.92449 0.91534 0.83965 0.94881 0.91393 0.93463 0.93501 0.96143 0.96330 0.92495 0.86654 0.85093 0.84605 0.84514 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 7.67 71.98 0.55 -1.83 16 2 C -0.06 -0.99 0.80 -52.18 -0.04 -1.04 16 3 C -0.14 -2.22 8.39 71.98 0.60 -1.61 16 4 C -0.15 -2.54 7.21 71.98 0.52 -2.02 16 5 C -0.13 -2.52 3.84 30.60 0.12 -2.40 16 6 C 0.12 2.68 1.96 44.17 0.09 2.77 16 7 H 0.09 1.91 5.46 -2.39 -0.01 1.90 16 8 N -0.69 -18.33 6.06 -495.46 -3.00 -21.33 16 9 C 0.07 2.25 5.47 86.30 0.47 2.73 16 10 C -0.09 -3.63 5.38 30.59 0.16 -3.46 16 11 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 12 C -0.53 -31.68 9.66 25.60 0.25 -31.43 16 13 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 14 C 0.00 0.05 5.47 84.66 0.46 0.52 16 15 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 16 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 20 C -0.05 -1.07 2.84 -19.87 -0.06 -1.12 16 21 C -0.12 -2.42 7.98 22.27 0.18 -2.24 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 24 C -0.13 -2.13 10.03 22.27 0.22 -1.90 16 25 C -0.12 -2.34 6.83 22.27 0.15 -2.19 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.95 5.77 -2.39 -0.01 0.94 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.30 3.72 -2.39 -0.01 1.29 16 33 H 0.05 0.77 8.00 -2.39 -0.02 0.75 16 34 H 0.05 0.86 6.90 -2.39 -0.02 0.85 16 35 H 0.06 1.23 7.43 -2.39 -0.02 1.21 16 36 H 0.07 1.29 7.27 -2.39 -0.02 1.27 16 37 H 0.34 8.77 8.35 -89.70 -0.75 8.02 16 38 H 0.03 0.98 7.43 -2.39 -0.02 0.96 16 39 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 43 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 44 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.12 2.30 7.74 -2.91 -0.02 2.28 16 46 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 47 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 48 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 49 H 0.13 2.10 7.40 -2.91 -0.02 2.08 16 Total: -1.00 -66.62 371.74 3.52 -63.09 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.09 Total: 21.93 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 4.25 Total: -49.62 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.70 Total: -82.11 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -66.62 3.52 -63.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179799419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.132 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds