Wall clock time and date at job start Tue Mar 31 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47379 * 2 1 4 4 C 1.53004 * 109.46957 * 239.99766 * 2 1 3 5 5 C 1.53002 * 109.47153 * 119.99893 * 2 1 3 6 6 C 1.53001 * 109.46870 * 65.63939 * 5 2 1 7 7 H 1.09004 * 109.47151 * 47.34715 * 6 5 2 8 8 N 1.46904 * 109.46885 * 167.33980 * 6 5 2 9 9 C 1.46892 * 111.00312 * 274.73556 * 8 6 5 10 10 C 1.53001 * 109.47127 * 176.09272 * 9 8 6 11 11 C 1.53005 * 109.47093 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47092 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00137 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46993 * 89.99806 * 16 14 12 18 18 H 1.48490 * 109.47169 * 209.99885 * 16 14 12 19 19 H 1.48503 * 109.47129 * 329.99965 * 16 14 12 20 20 C 1.50702 * 109.47525 * 287.34201 * 6 5 2 21 21 C 1.38241 * 119.99708 * 307.09253 * 20 6 5 22 22 C 1.38234 * 119.99591 * 179.78450 * 21 20 6 23 23 C 1.38230 * 119.99996 * 0.44296 * 22 21 20 24 24 C 1.38238 * 120.00329 * 359.81089 * 23 22 21 25 25 C 1.38230 * 119.99898 * 127.36385 * 20 6 5 26 26 H 1.09013 * 109.47048 * 288.80004 * 1 2 3 27 27 H 1.09001 * 109.47587 * 48.79838 * 1 2 3 28 28 H 1.09000 * 109.47304 * 168.80460 * 1 2 3 29 29 H 1.08996 * 109.47507 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47394 * 300.00179 * 3 2 1 31 31 H 1.08999 * 109.47618 * 59.99915 * 3 2 1 32 32 H 1.09003 * 109.47018 * 303.73988 * 4 2 1 33 33 H 1.08996 * 109.46674 * 63.73630 * 4 2 1 34 34 H 1.09000 * 109.46935 * 183.73670 * 4 2 1 35 35 H 1.08996 * 109.47086 * 305.64383 * 5 2 1 36 36 H 1.09000 * 109.47475 * 185.63562 * 5 2 1 37 37 H 1.00903 * 111.00037 * 38.69461 * 8 6 5 38 38 H 1.09004 * 109.47330 * 296.09647 * 9 8 6 39 39 H 1.09003 * 109.47115 * 56.09887 * 9 8 6 40 40 H 1.08994 * 109.47342 * 300.00469 * 10 9 8 41 41 H 1.09001 * 109.47011 * 60.00664 * 10 9 8 42 42 H 1.09004 * 109.47135 * 300.00235 * 11 10 9 43 43 H 1.08996 * 109.47070 * 59.99877 * 11 10 9 44 44 H 0.96997 * 120.00043 * 180.02562 * 15 14 12 45 45 H 1.08003 * 119.99769 * 359.97438 * 21 20 6 46 46 H 1.07999 * 119.99486 * 180.27243 * 22 21 20 47 47 H 1.08007 * 119.99676 * 179.83344 * 23 22 21 48 48 H 1.08002 * 119.99985 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.00322 * 359.97438 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.6490 -2.1988 1.1804 7 1 1.8962 -2.5946 0.1953 8 7 2.3844 -2.9483 2.2077 9 6 3.7110 -3.3478 1.7195 10 6 4.4823 -4.0387 2.8459 11 6 5.8643 -4.4542 2.3375 12 6 6.6237 -5.1353 3.4467 13 1 6.1665 -5.2590 4.4173 14 6 7.9025 -5.5995 3.2228 15 7 8.4594 -5.4484 2.0410 16 14 8.8441 -6.4432 4.5979 17 1 8.5743 -7.9030 4.5596 18 1 10.2989 -6.2039 4.4210 19 1 8.4076 -5.8933 5.9065 20 6 0.1678 -2.3383 1.4206 21 6 -0.4066 -1.7724 2.5435 22 6 -1.7660 -1.8966 2.7615 23 6 -2.5494 -2.5944 1.8615 24 6 -1.9742 -3.1648 0.7414 25 6 -0.6155 -3.0370 0.5211 26 1 -0.3634 0.3312 0.9730 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0081 -0.1995 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6229 -1.7278 -1.2833 33 1 1.7323 -0.1703 -2.1379 34 1 3.1279 -0.7797 -1.2164 35 1 1.5965 -0.2691 2.1363 36 1 3.1253 -0.6347 1.3012 37 1 2.4587 -2.4148 3.0609 38 1 3.5979 -4.0356 0.8815 39 1 4.2592 -2.4641 1.3928 40 1 4.5954 -3.3510 3.6838 41 1 3.9342 -4.9224 3.1726 42 1 5.7515 -5.1419 1.4993 43 1 6.4121 -3.5703 2.0110 44 1 9.3589 -5.7753 1.8833 45 1 0.2063 -1.2307 3.2487 46 1 -2.2154 -1.4507 3.6365 47 1 -3.6111 -2.6937 2.0333 48 1 -2.5864 -3.7097 0.0380 49 1 -0.1661 -3.4825 -0.3541 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179799431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:50 Heat of formation + Delta-G solvation = -7.104575 kcal Electronic energy + Delta-G solvation = -23376.113229 eV Core-core repulsion = 20301.626858 eV Total energy + Delta-G solvation = -3074.486371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24483 -37.75320 -35.95458 -33.67489 -32.06820 -30.97443 -30.31662 -28.10163 -27.42703 -27.17623 -25.82089 -23.77271 -22.73831 -22.06888 -20.68716 -20.01155 -18.78330 -16.97886 -16.29901 -15.59951 -15.44493 -15.12934 -14.78674 -14.51134 -14.45192 -14.15129 -13.87006 -13.43202 -13.39345 -13.19052 -12.94475 -12.40802 -12.28574 -12.15936 -11.91496 -11.79355 -11.63983 -11.49052 -11.42582 -11.06654 -11.00409 -10.82569 -10.74275 -10.63787 -10.54811 -10.46567 -10.41421 -9.67809 -9.33967 -9.04737 -8.87349 -8.58491 -8.32266 -8.07632 -5.97525 -3.99421 1.37399 1.40233 3.33892 3.39812 3.43483 3.75932 4.39553 4.49851 4.63267 4.66398 4.76486 4.89342 4.93034 4.99898 5.09397 5.26965 5.30156 5.38327 5.44716 5.48531 5.52023 5.56600 5.59697 5.68444 5.73014 5.81597 5.85689 5.88251 5.91818 5.92330 5.99368 6.03392 6.09187 6.18091 6.30102 6.31211 6.35428 6.47896 6.49974 6.63348 6.75289 6.81157 6.99594 7.15773 7.37178 7.65433 7.71083 7.86117 8.03065 8.46518 9.07803 9.64447 11.13935 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003233 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.661133 B = 8658.349809 C = 9567.815034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.138 4.138 6 C 0.117 3.883 7 H 0.090 0.910 8 N -0.681 5.681 9 C 0.060 3.940 10 C -0.108 4.108 11 C 0.023 3.977 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.039 4.039 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.337 0.663 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.260 0.740 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.859 12.075 -4.815 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.177 4.177 6 C 0.007 3.993 7 H 0.108 0.892 8 N -0.310 5.310 9 C -0.068 4.068 10 C -0.146 4.146 11 C -0.015 4.015 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.040 4.040 21 C -0.128 4.128 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.134 4.134 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.963 11.422 -5.065 24.404 hybrid contribution 1.100 0.377 0.753 1.385 sum -19.862 11.799 -4.312 23.502 Atomic orbital electron populations 1.22263 0.94513 1.02763 1.01227 1.20440 0.95783 0.95081 0.95048 1.21880 1.00996 0.95562 1.01403 1.21984 1.01249 1.00268 0.96825 1.22460 1.01262 0.95960 0.98005 1.20712 0.89830 0.91720 0.97045 0.89231 1.60667 1.19303 1.45280 1.05794 1.22157 0.86984 0.98343 0.99314 1.21638 0.97881 0.99087 0.95985 1.19055 0.89641 0.96279 0.96505 1.21262 0.99304 1.37302 0.97804 0.92697 1.25029 0.97717 0.96214 0.95564 1.69964 1.15004 1.47011 1.21642 0.86601 0.79024 0.79921 0.82504 1.20653 1.21273 1.19886 1.19712 0.94817 0.95469 0.94012 1.20914 0.94678 1.00112 0.97143 1.21072 0.94015 0.99484 0.99179 1.21047 0.99551 0.99074 0.95214 1.21067 0.94983 0.99993 0.97774 1.20979 0.93769 0.99015 0.99618 0.92805 0.93620 0.91008 0.92696 0.92865 0.92893 0.92276 0.92856 0.92486 0.91554 0.91391 0.84476 0.91541 0.95626 0.93715 0.92567 0.96599 0.96833 0.93060 0.86563 0.86558 0.86647 0.86469 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.12 37.16 0.26 -1.18 16 2 C -0.06 -0.62 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.30 8.45 37.15 0.31 -0.98 16 4 C -0.15 -1.45 7.85 37.16 0.29 -1.16 16 5 C -0.14 -1.50 3.83 -26.73 -0.10 -1.61 16 6 C 0.12 1.41 2.05 -68.86 -0.14 1.27 16 7 H 0.09 1.14 5.20 -51.93 -0.27 0.87 16 8 N -0.68 -9.91 6.22 -107.95 -0.67 -10.58 16 9 C 0.06 1.04 5.47 -3.83 -0.02 1.02 16 10 C -0.11 -2.25 5.37 -26.73 -0.14 -2.40 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 C -0.04 -0.45 2.76 -104.62 -0.29 -0.74 16 21 C -0.11 -1.20 7.87 -39.58 -0.31 -1.51 16 22 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 23 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.12 -1.27 7.80 -39.58 -0.31 -1.58 16 26 H 0.05 0.53 7.17 -51.92 -0.37 0.15 16 27 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.07 0.72 4.39 -51.93 -0.23 0.49 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 6.27 -51.93 -0.33 0.27 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 36 H 0.07 0.82 7.24 -51.93 -0.38 0.45 16 37 H 0.34 4.67 8.43 -39.29 -0.33 4.34 16 38 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 39 H 0.03 0.44 7.27 -51.93 -0.38 0.06 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.12 1.18 7.11 -52.48 -0.37 0.81 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.12 1.20 7.96 -52.49 -0.42 0.79 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -30.24 376.73 -10.46 -40.70 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.87 Total: 1.52 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -2.31 Total: -27.71 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.06 Total: -37.10 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.24 -10.46 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179799431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.592 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds