Wall clock time and date at job start Tue Mar 31 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47379 * 2 1 4 4 C 1.53004 * 109.46957 * 239.99766 * 2 1 3 5 5 C 1.53002 * 109.47153 * 119.99893 * 2 1 3 6 6 C 1.53001 * 109.46870 * 65.63939 * 5 2 1 7 7 H 1.09004 * 109.47151 * 47.34715 * 6 5 2 8 8 N 1.46904 * 109.46885 * 167.33980 * 6 5 2 9 9 C 1.46892 * 111.00312 * 274.73556 * 8 6 5 10 10 C 1.53001 * 109.47127 * 176.09272 * 9 8 6 11 11 C 1.53005 * 109.47093 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47092 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00137 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46993 * 89.99806 * 16 14 12 18 18 H 1.48490 * 109.47169 * 209.99885 * 16 14 12 19 19 H 1.48503 * 109.47129 * 329.99965 * 16 14 12 20 20 C 1.50702 * 109.47525 * 287.34201 * 6 5 2 21 21 C 1.38241 * 119.99708 * 307.09253 * 20 6 5 22 22 C 1.38234 * 119.99591 * 179.78450 * 21 20 6 23 23 C 1.38230 * 119.99996 * 0.44296 * 22 21 20 24 24 C 1.38238 * 120.00329 * 359.81089 * 23 22 21 25 25 C 1.38230 * 119.99898 * 127.36385 * 20 6 5 26 26 H 1.09013 * 109.47048 * 288.80004 * 1 2 3 27 27 H 1.09001 * 109.47587 * 48.79838 * 1 2 3 28 28 H 1.09000 * 109.47304 * 168.80460 * 1 2 3 29 29 H 1.08996 * 109.47507 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47394 * 300.00179 * 3 2 1 31 31 H 1.08999 * 109.47618 * 59.99915 * 3 2 1 32 32 H 1.09003 * 109.47018 * 303.73988 * 4 2 1 33 33 H 1.08996 * 109.46674 * 63.73630 * 4 2 1 34 34 H 1.09000 * 109.46935 * 183.73670 * 4 2 1 35 35 H 1.08996 * 109.47086 * 305.64383 * 5 2 1 36 36 H 1.09000 * 109.47475 * 185.63562 * 5 2 1 37 37 H 1.00903 * 111.00037 * 38.69461 * 8 6 5 38 38 H 1.09004 * 109.47330 * 296.09647 * 9 8 6 39 39 H 1.09003 * 109.47115 * 56.09887 * 9 8 6 40 40 H 1.08994 * 109.47342 * 300.00469 * 10 9 8 41 41 H 1.09001 * 109.47011 * 60.00664 * 10 9 8 42 42 H 1.09004 * 109.47135 * 300.00235 * 11 10 9 43 43 H 1.08996 * 109.47070 * 59.99877 * 11 10 9 44 44 H 0.96997 * 120.00043 * 180.02562 * 15 14 12 45 45 H 1.08003 * 119.99769 * 359.97438 * 21 20 6 46 46 H 1.07999 * 119.99486 * 180.27243 * 22 21 20 47 47 H 1.08007 * 119.99676 * 179.83344 * 23 22 21 48 48 H 1.08002 * 119.99985 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.00322 * 359.97438 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.6490 -2.1988 1.1804 7 1 1.8962 -2.5946 0.1953 8 7 2.3844 -2.9483 2.2077 9 6 3.7110 -3.3478 1.7195 10 6 4.4823 -4.0387 2.8459 11 6 5.8643 -4.4542 2.3375 12 6 6.6237 -5.1353 3.4467 13 1 6.1665 -5.2590 4.4173 14 6 7.9025 -5.5995 3.2228 15 7 8.4594 -5.4484 2.0410 16 14 8.8441 -6.4432 4.5979 17 1 8.5743 -7.9030 4.5596 18 1 10.2989 -6.2039 4.4210 19 1 8.4076 -5.8933 5.9065 20 6 0.1678 -2.3383 1.4206 21 6 -0.4066 -1.7724 2.5435 22 6 -1.7660 -1.8966 2.7615 23 6 -2.5494 -2.5944 1.8615 24 6 -1.9742 -3.1648 0.7414 25 6 -0.6155 -3.0370 0.5211 26 1 -0.3634 0.3312 0.9730 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0081 -0.1995 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6229 -1.7278 -1.2833 33 1 1.7323 -0.1703 -2.1379 34 1 3.1279 -0.7797 -1.2164 35 1 1.5965 -0.2691 2.1363 36 1 3.1253 -0.6347 1.3012 37 1 2.4587 -2.4148 3.0609 38 1 3.5979 -4.0356 0.8815 39 1 4.2592 -2.4641 1.3928 40 1 4.5954 -3.3510 3.6838 41 1 3.9342 -4.9224 3.1726 42 1 5.7515 -5.1419 1.4993 43 1 6.4121 -3.5703 2.0110 44 1 9.3589 -5.7753 1.8833 45 1 0.2063 -1.2307 3.2487 46 1 -2.2154 -1.4507 3.6365 47 1 -3.6111 -2.6937 2.0333 48 1 -2.5864 -3.7097 0.0380 49 1 -0.1661 -3.4825 -0.3541 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179799431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:49 Heat of formation + Delta-G solvation = -22.156690 kcal Electronic energy + Delta-G solvation = -23376.765938 eV Core-core repulsion = 20301.626858 eV Total energy + Delta-G solvation = -3075.139079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10720 -38.59946 -37.24710 -35.48026 -33.66329 -31.78496 -31.61738 -29.26824 -28.23710 -27.93734 -27.50022 -24.95705 -23.98955 -23.18406 -22.03655 -21.32438 -19.61595 -18.50812 -17.75901 -16.71465 -16.58485 -16.36331 -16.17751 -15.64299 -15.34243 -15.28278 -15.02451 -14.43765 -14.29217 -14.24049 -14.09063 -13.91673 -13.48557 -13.35382 -13.18925 -12.90039 -12.77657 -12.71804 -12.47486 -12.42846 -12.32177 -12.24415 -11.87451 -11.80418 -11.64757 -11.52294 -11.48817 -11.34167 -11.28302 -11.06029 -10.55677 -9.65403 -9.47883 -9.20860 -8.20421 -6.31457 0.57446 0.62131 1.39677 1.41254 1.52391 2.40777 2.92099 3.12622 3.36825 3.74793 3.80021 3.92400 4.05772 4.13403 4.24257 4.25825 4.32582 4.37247 4.42401 4.48269 4.65039 4.68607 4.70552 4.74592 4.79958 4.83578 4.90955 4.93165 4.98607 5.05590 5.08069 5.09771 5.12245 5.21571 5.23535 5.25495 5.28989 5.38282 5.49408 5.51581 5.54828 5.69482 5.73756 5.74998 5.81756 5.85491 6.09274 6.23509 6.27700 6.48892 6.85384 7.37730 8.91509 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003233 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.661133 B = 8658.349809 C = 9567.815034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.132 4.132 6 C 0.122 3.878 7 H 0.081 0.919 8 N -0.682 5.682 9 C 0.076 3.924 10 C -0.093 4.093 11 C 0.027 3.973 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.050 4.050 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.129 4.129 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.342 0.658 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.050 0.950 41 H 0.050 0.950 42 H -0.010 1.010 43 H -0.009 1.009 44 H 0.264 0.736 45 H 0.120 0.880 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.407 12.445 -3.823 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.171 4.171 6 C 0.012 3.988 7 H 0.100 0.900 8 N -0.312 5.312 9 C -0.053 4.053 10 C -0.131 4.131 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.050 4.050 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.072 0.928 45 H 0.138 0.862 46 H 0.153 0.847 47 H 0.156 0.844 48 H 0.153 0.847 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.532 11.802 -4.070 25.759 hybrid contribution 1.526 0.268 0.407 1.602 sum -21.006 12.070 -3.663 24.502 Atomic orbital electron populations 1.22192 0.93924 1.02684 1.01367 1.20412 0.96147 0.95294 0.94207 1.21866 1.00590 0.95134 1.02107 1.21984 1.00484 1.00372 0.97499 1.22379 1.00285 0.95357 0.99039 1.20673 0.90311 0.92027 0.95761 0.90049 1.60598 1.17485 1.46454 1.06694 1.21818 0.88132 0.97795 0.97524 1.21384 0.95276 0.99264 0.97148 1.18952 0.92275 0.94567 0.95306 1.21700 1.00116 1.37796 0.98535 0.92303 1.25994 0.98814 0.96814 0.98268 1.70095 1.15541 1.47909 1.23840 0.85443 0.77442 0.78839 0.79309 1.19771 1.20633 1.18718 1.19617 0.94031 0.96566 0.94828 1.21037 0.95400 1.00339 0.97031 1.21347 0.93679 0.99301 0.99891 1.21374 1.00751 0.98243 0.94714 1.21331 0.94703 0.99906 0.98337 1.21116 0.94508 0.99295 0.99795 0.92925 0.92921 0.91422 0.93350 0.91936 0.92422 0.92591 0.91782 0.93616 0.90867 0.92891 0.83899 0.92346 0.95726 0.93100 0.93073 0.99134 0.99050 0.92761 0.86221 0.84689 0.84425 0.84672 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.12 71.98 0.51 -2.06 16 2 C -0.06 -1.13 0.80 -52.18 -0.04 -1.17 16 3 C -0.14 -2.42 8.45 71.98 0.61 -1.81 16 4 C -0.15 -2.87 7.85 71.98 0.57 -2.31 16 5 C -0.13 -2.83 3.83 30.60 0.12 -2.71 16 6 C 0.12 2.92 2.05 44.17 0.09 3.01 16 7 H 0.08 2.09 5.20 -2.38 -0.01 2.08 16 8 N -0.68 -19.74 6.22 -495.44 -3.08 -22.82 16 9 C 0.08 2.67 5.47 86.30 0.47 3.15 16 10 C -0.09 -3.93 5.37 30.60 0.16 -3.77 16 11 C 0.03 1.44 4.97 29.85 0.15 1.59 16 12 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 13 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 14 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 15 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 16 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 20 C -0.05 -1.10 2.76 -19.87 -0.05 -1.15 16 21 C -0.12 -2.43 7.87 22.27 0.18 -2.25 16 22 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 25 C -0.13 -2.71 7.80 22.27 0.17 -2.53 16 26 H 0.05 0.94 7.17 -2.38 -0.02 0.93 16 27 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 28 H 0.07 1.27 4.39 -2.39 -0.01 1.26 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.12 6.27 -2.39 -0.01 1.11 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.46 6.55 -2.39 -0.02 1.45 16 36 H 0.05 1.29 7.24 -2.39 -0.02 1.28 16 37 H 0.34 9.30 8.43 -89.69 -0.76 8.54 16 38 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 39 H 0.02 0.86 7.27 -2.39 -0.02 0.85 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.12 2.27 7.11 -2.91 -0.02 2.25 16 46 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 48 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 49 H 0.12 2.38 7.96 -2.91 -0.02 2.36 16 Total: -1.00 -64.63 376.73 3.67 -60.97 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.14 Total: 21.43 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 4.30 Total: -49.13 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.80 Total: -80.25 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.63 3.67 -60.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179799431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.809 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds