Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 H 1.09001 * 109.47084 * 53.84869 * 3 2 1 5 5 N 1.46900 * 109.46849 * 293.85462 * 3 2 1 6 6 C 1.46907 * 111.00051 * 100.51997 * 5 3 2 7 7 C 1.53001 * 109.47121 * 183.57368 * 6 5 3 8 8 C 1.52997 * 109.46855 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47390 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99475 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00268 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00101 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99734 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47238 * 90.00571 * 13 11 9 15 15 H 1.48506 * 109.47193 * 210.00227 * 13 11 9 16 16 H 1.48502 * 109.47428 * 330.00258 * 13 11 9 17 17 C 1.53000 * 109.47280 * 173.85557 * 3 2 1 18 18 C 1.53004 * 109.46858 * 173.44870 * 17 3 2 19 19 C 1.52999 * 109.47067 * 53.44886 * 17 3 2 20 20 C 1.50699 * 109.46765 * 293.44876 * 17 3 2 21 21 C 1.38234 * 119.99518 * 173.37590 * 20 17 3 22 22 C 1.38240 * 119.99742 * 180.02562 * 21 20 17 23 23 C 1.38229 * 120.00090 * 0.02562 * 22 21 20 24 24 C 1.38239 * 120.00009 * 0.25159 * 23 22 21 25 25 C 1.38229 * 120.00314 * 353.40029 * 20 17 3 26 26 H 1.08994 * 109.47588 * 66.15775 * 1 2 3 27 27 H 1.09001 * 109.47063 * 186.15472 * 1 2 3 28 28 H 1.08995 * 109.46937 * 306.15264 * 1 2 3 29 29 H 1.08999 * 109.46608 * 240.00254 * 2 1 3 30 30 H 1.09001 * 109.46930 * 120.00292 * 2 1 3 31 31 H 1.00894 * 111.00457 * 336.56957 * 5 3 2 32 32 H 1.09000 * 109.46721 * 303.57086 * 6 5 3 33 33 H 1.08997 * 109.47011 * 63.57278 * 6 5 3 34 34 H 1.09000 * 109.47093 * 299.99490 * 7 6 5 35 35 H 1.08997 * 109.47252 * 60.00057 * 7 6 5 36 36 H 1.08998 * 109.47752 * 299.99765 * 8 7 6 37 37 H 1.08999 * 109.47554 * 59.99667 * 8 7 6 38 38 H 0.96999 * 120.00159 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.46581 * 180.02562 * 18 17 3 40 40 H 1.09000 * 109.46935 * 299.99635 * 18 17 3 41 41 H 1.08999 * 109.47140 * 60.00326 * 18 17 3 42 42 H 1.09002 * 109.47460 * 300.00470 * 19 17 3 43 43 H 1.09008 * 109.47092 * 60.00290 * 19 17 3 44 44 H 1.08993 * 109.47078 * 180.02562 * 19 17 3 45 45 H 1.07997 * 120.00379 * 359.97438 * 21 20 17 46 46 H 1.08003 * 119.99515 * 179.97438 * 22 21 20 47 47 H 1.07994 * 119.99955 * 179.97438 * 23 22 21 48 48 H 1.08000 * 120.00125 * 179.73178 * 24 23 22 49 49 H 1.08005 * 120.00043 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5896 1.9871 0.8298 5 7 1.6752 2.0908 -1.2667 6 6 0.4922 2.9456 -1.0990 7 6 0.0904 3.5318 -2.4539 8 6 -1.1412 4.4225 -2.2791 9 6 -1.5368 5.0004 -3.6136 10 1 -0.9669 4.7564 -4.4979 11 6 -2.6267 5.8398 -3.7056 12 7 -3.3209 6.1365 -2.6288 13 14 -3.1164 6.5566 -5.3596 14 1 -4.0764 5.6433 -6.0302 15 1 -3.7544 7.8820 -5.1553 16 1 -1.9080 6.7145 -6.2081 17 6 3.5623 1.4452 0.1544 18 6 4.0888 2.8725 -0.0089 19 6 4.1850 0.5463 -0.9156 20 6 3.9294 0.9276 1.5213 21 6 5.2555 0.7084 1.8440 22 6 5.5923 0.2330 3.0976 23 6 4.6029 -0.0235 4.0283 24 6 3.2764 0.1904 3.7036 25 6 2.9401 0.6717 2.4521 26 1 -0.3634 0.4154 -0.9399 27 1 -0.3633 -1.0218 0.1102 28 1 -0.3633 0.6062 0.8298 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5269 1.4068 -1.9934 32 1 -0.3311 2.3524 -0.7012 33 1 0.7242 3.7553 -0.4072 34 1 0.9137 4.1250 -2.8518 35 1 -0.1416 2.7220 -3.1457 36 1 -1.9648 3.8298 -1.8811 37 1 -0.9089 5.2322 -1.5874 38 1 -4.0875 6.7273 -2.6934 39 1 5.1733 2.8744 0.1006 40 1 3.8232 3.2468 -0.9976 41 1 3.6451 3.5129 0.7534 42 1 3.8098 -0.4705 -0.7994 43 1 3.9194 0.9208 -1.9043 44 1 5.2694 0.5479 -0.8054 45 1 6.0284 0.9076 1.1164 46 1 6.6284 0.0613 3.3496 47 1 4.8660 -0.3952 5.0075 48 1 2.5030 -0.0141 4.4292 49 1 1.9039 0.8430 2.2000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180008385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = -3.221214 kcal Electronic energy + Delta-G solvation = -23435.263089 eV Core-core repulsion = 20360.945113 eV Total energy + Delta-G solvation = -3074.317975 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40852 -37.90477 -35.07985 -33.54539 -32.35909 -30.98599 -30.51775 -29.55696 -27.21520 -26.80467 -25.11765 -23.08282 -22.50291 -22.00990 -21.35478 -20.12770 -18.74110 -17.26209 -16.26850 -15.63138 -15.31908 -15.16504 -15.02772 -14.43226 -14.10860 -13.91106 -13.81471 -13.59931 -13.29411 -13.08016 -12.64845 -12.47268 -12.22357 -11.99423 -11.92797 -11.78695 -11.70604 -11.45373 -11.37862 -11.28664 -11.01185 -10.86018 -10.62130 -10.54449 -10.50806 -10.46971 -10.17819 -9.66639 -9.29559 -9.01740 -8.99010 -8.74247 -8.32200 -7.99710 -5.97382 -3.99299 1.27990 1.29463 3.33422 3.39592 3.43396 3.69117 4.30936 4.49253 4.58399 4.78065 4.83310 4.88650 4.97441 5.02567 5.13392 5.24741 5.32087 5.38431 5.38557 5.46432 5.52755 5.64614 5.71900 5.78102 5.84546 5.89710 5.92043 5.92730 5.98317 6.02581 6.05901 6.11603 6.17004 6.26219 6.30372 6.39540 6.41024 6.41685 6.56553 6.63021 6.76885 6.84225 6.91959 7.17364 7.43136 7.70725 7.73027 7.87150 8.03450 8.46810 9.08092 9.64614 11.14081 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.002879 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.927082 B = 9722.283069 C = 9921.307689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.157 4.157 3 C 0.094 3.906 4 H 0.074 0.926 5 N -0.680 5.680 6 C 0.056 3.944 7 C -0.107 4.107 8 C 0.023 3.977 9 C -0.518 4.518 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.013 4.013 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.124 4.124 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.337 0.663 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.012 0.988 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.446 -14.699 11.247 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.196 4.196 3 C -0.016 4.016 4 H 0.092 0.908 5 N -0.310 5.310 6 C -0.072 4.072 7 C -0.145 4.145 8 C -0.015 4.015 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.013 4.013 18 C -0.184 4.184 19 C -0.194 4.194 20 C -0.061 4.061 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.142 4.142 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.732 -14.060 11.376 24.639 hybrid contribution -1.122 -0.253 -0.639 1.316 sum 15.610 -14.313 10.737 23.745 Atomic orbital electron populations 1.21891 0.95696 1.01453 1.02449 1.22457 0.96127 0.98052 1.02931 1.21625 0.93752 0.92885 0.93331 0.90837 1.60573 1.38850 1.25204 1.06341 1.22263 0.89583 0.95574 0.99804 1.21619 0.99956 0.99091 0.93838 1.19049 0.91393 0.94040 0.96989 1.21264 1.12153 1.27850 0.94356 0.92724 1.25025 0.96517 0.96568 0.96424 1.69963 1.19107 1.36616 1.27945 0.86612 0.78679 0.78471 0.84342 1.20728 1.21249 1.19863 1.19482 0.95182 0.96144 0.90540 1.21724 0.98991 0.94201 1.03471 1.21899 0.99734 0.98816 0.98929 1.19967 0.93151 0.97387 0.95599 1.20983 0.95905 0.99953 0.96609 1.21102 0.99110 0.99830 0.93878 1.21092 0.93182 1.01306 0.99342 1.21157 0.96306 0.99691 0.96673 1.21340 0.99857 0.99627 0.93364 0.92112 0.92913 0.92743 0.91420 0.90937 0.84481 0.95245 0.91753 0.92667 0.93822 0.96917 0.96653 0.93067 0.93760 0.90206 0.93339 0.92874 0.91325 0.93143 0.86241 0.86450 0.86550 0.86371 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.67 37.16 0.32 -1.46 16 2 C -0.16 -1.66 3.81 -26.73 -0.10 -1.76 16 3 C 0.09 1.10 0.99 -67.71 -0.07 1.04 16 4 H 0.07 0.95 6.26 -51.93 -0.32 0.62 16 5 N -0.68 -9.21 4.61 -106.72 -0.49 -9.70 16 6 C 0.06 0.94 5.08 -3.82 -0.02 0.92 16 7 C -0.11 -2.19 5.38 -26.73 -0.14 -2.33 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 9 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.01 -0.14 0.47 -155.66 -0.07 -0.21 16 18 C -0.13 -1.49 8.12 37.16 0.30 -1.19 16 19 C -0.14 -1.36 7.58 37.16 0.28 -1.08 16 20 C -0.06 -0.65 4.45 -104.63 -0.47 -1.11 16 21 C -0.12 -1.16 8.78 -39.58 -0.35 -1.50 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.32 7.41 -39.59 -0.29 -1.61 16 26 H 0.06 0.77 6.67 -51.93 -0.35 0.43 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.07 0.70 6.58 -51.93 -0.34 0.36 16 30 H 0.07 0.74 5.50 -51.93 -0.29 0.46 16 31 H 0.34 4.42 8.05 -39.29 -0.32 4.10 16 32 H 0.03 0.49 5.91 -51.93 -0.31 0.19 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.04 0.47 7.81 -51.93 -0.41 0.06 16 40 H 0.08 1.04 7.44 -51.93 -0.39 0.66 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.51 6.47 -51.93 -0.34 0.18 16 43 H 0.07 0.72 7.80 -51.92 -0.41 0.31 16 44 H 0.05 0.46 7.05 -51.93 -0.37 0.09 16 45 H 0.12 1.05 7.11 -52.49 -0.37 0.68 16 46 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.13 1.34 5.02 -52.48 -0.26 1.08 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -29.79 372.16 -10.16 -39.95 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.65 Total: 1.93 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -2.35 Total: -28.14 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.24 Total: -36.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.79 -10.16 -39.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180008385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.733 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds