Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 H 1.09001 * 109.47084 * 53.84869 * 3 2 1 5 5 N 1.46900 * 109.46849 * 293.85462 * 3 2 1 6 6 C 1.46907 * 111.00051 * 100.51997 * 5 3 2 7 7 C 1.53001 * 109.47121 * 183.57368 * 6 5 3 8 8 C 1.52997 * 109.46855 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47390 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99475 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00268 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00101 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99734 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47238 * 90.00571 * 13 11 9 15 15 H 1.48506 * 109.47193 * 210.00227 * 13 11 9 16 16 H 1.48502 * 109.47428 * 330.00258 * 13 11 9 17 17 C 1.53000 * 109.47280 * 173.85557 * 3 2 1 18 18 C 1.53004 * 109.46858 * 173.44870 * 17 3 2 19 19 C 1.52999 * 109.47067 * 53.44886 * 17 3 2 20 20 C 1.50699 * 109.46765 * 293.44876 * 17 3 2 21 21 C 1.38234 * 119.99518 * 173.37590 * 20 17 3 22 22 C 1.38240 * 119.99742 * 180.02562 * 21 20 17 23 23 C 1.38229 * 120.00090 * 0.02562 * 22 21 20 24 24 C 1.38239 * 120.00009 * 0.25159 * 23 22 21 25 25 C 1.38229 * 120.00314 * 353.40029 * 20 17 3 26 26 H 1.08994 * 109.47588 * 66.15775 * 1 2 3 27 27 H 1.09001 * 109.47063 * 186.15472 * 1 2 3 28 28 H 1.08995 * 109.46937 * 306.15264 * 1 2 3 29 29 H 1.08999 * 109.46608 * 240.00254 * 2 1 3 30 30 H 1.09001 * 109.46930 * 120.00292 * 2 1 3 31 31 H 1.00894 * 111.00457 * 336.56957 * 5 3 2 32 32 H 1.09000 * 109.46721 * 303.57086 * 6 5 3 33 33 H 1.08997 * 109.47011 * 63.57278 * 6 5 3 34 34 H 1.09000 * 109.47093 * 299.99490 * 7 6 5 35 35 H 1.08997 * 109.47252 * 60.00057 * 7 6 5 36 36 H 1.08998 * 109.47752 * 299.99765 * 8 7 6 37 37 H 1.08999 * 109.47554 * 59.99667 * 8 7 6 38 38 H 0.96999 * 120.00159 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.46581 * 180.02562 * 18 17 3 40 40 H 1.09000 * 109.46935 * 299.99635 * 18 17 3 41 41 H 1.08999 * 109.47140 * 60.00326 * 18 17 3 42 42 H 1.09002 * 109.47460 * 300.00470 * 19 17 3 43 43 H 1.09008 * 109.47092 * 60.00290 * 19 17 3 44 44 H 1.08993 * 109.47078 * 180.02562 * 19 17 3 45 45 H 1.07997 * 120.00379 * 359.97438 * 21 20 17 46 46 H 1.08003 * 119.99515 * 179.97438 * 22 21 20 47 47 H 1.07994 * 119.99955 * 179.97438 * 23 22 21 48 48 H 1.08000 * 120.00125 * 179.73178 * 24 23 22 49 49 H 1.08005 * 120.00043 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5896 1.9871 0.8298 5 7 1.6752 2.0908 -1.2667 6 6 0.4922 2.9456 -1.0990 7 6 0.0904 3.5318 -2.4539 8 6 -1.1412 4.4225 -2.2791 9 6 -1.5368 5.0004 -3.6136 10 1 -0.9669 4.7564 -4.4979 11 6 -2.6267 5.8398 -3.7056 12 7 -3.3209 6.1365 -2.6288 13 14 -3.1164 6.5566 -5.3596 14 1 -4.0764 5.6433 -6.0302 15 1 -3.7544 7.8820 -5.1553 16 1 -1.9080 6.7145 -6.2081 17 6 3.5623 1.4452 0.1544 18 6 4.0888 2.8725 -0.0089 19 6 4.1850 0.5463 -0.9156 20 6 3.9294 0.9276 1.5213 21 6 5.2555 0.7084 1.8440 22 6 5.5923 0.2330 3.0976 23 6 4.6029 -0.0235 4.0283 24 6 3.2764 0.1904 3.7036 25 6 2.9401 0.6717 2.4521 26 1 -0.3634 0.4154 -0.9399 27 1 -0.3633 -1.0218 0.1102 28 1 -0.3633 0.6062 0.8298 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5269 1.4068 -1.9934 32 1 -0.3311 2.3524 -0.7012 33 1 0.7242 3.7553 -0.4072 34 1 0.9137 4.1250 -2.8518 35 1 -0.1416 2.7220 -3.1457 36 1 -1.9648 3.8298 -1.8811 37 1 -0.9089 5.2322 -1.5874 38 1 -4.0875 6.7273 -2.6934 39 1 5.1733 2.8744 0.1006 40 1 3.8232 3.2468 -0.9976 41 1 3.6451 3.5129 0.7534 42 1 3.8098 -0.4705 -0.7994 43 1 3.9194 0.9208 -1.9043 44 1 5.2694 0.5479 -0.8054 45 1 6.0284 0.9076 1.1164 46 1 6.6284 0.0613 3.3496 47 1 4.8660 -0.3952 5.0075 48 1 2.5030 -0.0141 4.4292 49 1 1.9039 0.8430 2.2000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180008385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = -17.421109 kcal Electronic energy + Delta-G solvation = -23435.878842 eV Core-core repulsion = 20360.945113 eV Total energy + Delta-G solvation = -3074.933729 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25202 -38.83419 -36.51214 -35.09720 -33.83287 -32.09875 -31.61235 -30.47862 -28.35268 -28.07639 -26.51868 -24.29097 -23.63733 -22.99811 -22.36711 -21.72691 -19.66374 -18.52544 -17.98283 -16.84585 -16.54852 -16.21326 -16.01902 -15.85489 -15.29432 -14.89771 -14.75247 -14.65023 -14.45571 -14.10274 -14.03935 -13.60185 -13.45803 -13.31371 -13.26537 -12.81783 -12.74910 -12.70717 -12.60432 -12.47075 -12.33623 -12.24805 -12.07185 -11.93067 -11.57904 -11.45279 -11.38056 -11.33396 -11.25810 -10.87941 -10.55300 -9.72417 -9.50406 -9.14885 -8.20039 -6.31006 0.54342 0.56612 1.39522 1.41051 1.52358 2.40874 2.95536 3.13065 3.23005 3.70735 3.90175 3.98026 4.15642 4.19347 4.21489 4.29806 4.34084 4.38598 4.43270 4.45937 4.59744 4.70396 4.73091 4.75613 4.77652 4.84254 4.95236 4.96879 5.06065 5.08742 5.11072 5.16096 5.18493 5.22982 5.24142 5.26839 5.30971 5.38724 5.48937 5.53652 5.56731 5.69697 5.70652 5.77096 5.84294 5.86954 6.16155 6.20265 6.29437 6.59577 6.86349 7.38276 8.91940 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.002879 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.927082 B = 9722.283069 C = 9921.307689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.098 3.902 4 H 0.059 0.941 5 N -0.674 5.674 6 C 0.073 3.927 7 C -0.091 4.091 8 C 0.027 3.973 9 C -0.542 4.542 10 H 0.059 0.941 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.263 1.263 17 C -0.006 4.006 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.072 4.072 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.139 4.139 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.343 0.657 32 H 0.028 0.972 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.050 0.950 36 H -0.011 1.011 37 H -0.012 1.012 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.130 0.870 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.131 0.869 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.892 -15.921 10.900 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.186 4.186 3 C -0.012 4.012 4 H 0.078 0.922 5 N -0.305 5.305 6 C -0.056 4.056 7 C -0.129 4.129 8 C -0.011 4.011 9 C -0.580 4.580 10 H 0.078 0.922 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.789 3.211 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.007 4.007 18 C -0.181 4.181 19 C -0.190 4.190 20 C -0.072 4.072 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.157 4.157 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.007 0.993 37 H 0.006 0.994 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.148 0.852 46 H 0.157 0.843 47 H 0.156 0.844 48 H 0.149 0.851 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.195 -15.299 11.028 26.205 hybrid contribution -1.551 0.117 -0.444 1.617 sum 16.644 -15.182 10.584 24.891 Atomic orbital electron populations 1.21872 0.96267 1.01991 1.01232 1.22363 0.95444 0.97109 1.03640 1.21620 0.94658 0.93314 0.91635 0.92243 1.60494 1.36816 1.25543 1.07602 1.21923 0.90811 0.95725 0.97186 1.21361 0.97248 0.98260 0.96032 1.18947 0.92958 0.93734 0.95427 1.21708 1.12590 1.28291 0.95383 0.92244 1.25994 0.96440 0.96911 1.00614 1.70097 1.19655 1.37295 1.30448 0.85452 0.78657 0.77686 0.79287 1.19679 1.20735 1.18746 1.19386 0.94095 0.95782 0.91450 1.21681 0.99795 0.94613 1.01993 1.21867 1.00413 0.98681 0.98056 1.19957 0.93749 0.98211 0.95325 1.21167 0.95706 0.99983 0.97382 1.21416 1.00347 0.99019 0.93468 1.21409 0.92867 1.00678 1.00337 1.21395 0.97255 0.99483 0.96589 1.21403 0.99713 1.00495 0.94084 0.93696 0.91588 0.93475 0.90623 0.90154 0.83840 0.95361 0.92940 0.93012 0.93146 0.99255 0.99353 0.92800 0.92443 0.91659 0.94806 0.92358 0.91929 0.92044 0.85205 0.84270 0.84440 0.85063 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.67 71.98 0.62 -2.84 16 2 C -0.15 -2.96 3.81 30.60 0.12 -2.84 16 3 C 0.10 2.26 0.99 44.92 0.04 2.31 16 4 H 0.06 1.57 6.26 -2.39 -0.01 1.55 16 5 N -0.67 -18.19 4.61 -491.55 -2.26 -20.46 16 6 C 0.07 2.49 5.08 86.30 0.44 2.93 16 7 C -0.09 -3.79 5.38 30.59 0.16 -3.62 16 8 C 0.03 1.45 4.97 29.85 0.15 1.60 16 9 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 10 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 11 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 12 N -0.93 -57.89 13.29 21.44 0.28 -57.60 16 13 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 C -0.01 -0.13 0.47 -52.93 -0.02 -0.16 16 18 C -0.12 -2.87 8.12 71.98 0.58 -2.28 16 19 C -0.13 -2.43 7.58 71.98 0.55 -1.88 16 20 C -0.07 -1.46 4.45 -19.87 -0.09 -1.55 16 21 C -0.12 -2.23 8.78 22.27 0.20 -2.03 16 22 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 23 C -0.14 -2.15 10.05 22.27 0.22 -1.93 16 24 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 25 C -0.14 -2.85 7.41 22.27 0.17 -2.68 16 26 H 0.04 1.13 6.67 -2.39 -0.02 1.11 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.10 8.12 -2.39 -0.02 1.08 16 29 H 0.08 1.43 6.58 -2.39 -0.02 1.41 16 30 H 0.08 1.54 5.50 -2.39 -0.01 1.53 16 31 H 0.34 8.73 8.05 -89.70 -0.72 8.01 16 32 H 0.03 0.98 5.91 -2.39 -0.01 0.96 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.06 1.15 7.81 -2.39 -0.02 1.13 16 40 H 0.06 1.70 7.44 -2.39 -0.02 1.68 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 1.00 6.47 -2.39 -0.02 0.99 16 43 H 0.06 1.22 7.80 -2.38 -0.02 1.20 16 44 H 0.06 0.99 7.05 -2.39 -0.02 0.97 16 45 H 0.13 1.98 7.11 -2.91 -0.02 1.96 16 46 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 48 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 49 H 0.12 2.56 5.02 -2.91 -0.01 2.55 16 Total: -1.00 -64.31 372.16 4.51 -59.80 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.18 Total: 21.07 kcal Atomic # 6 Polarization: -54.03 SS G_CDS: 4.28 Total: -49.75 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -1.98 Total: -78.06 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.31 4.51 -59.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180008385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.378 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds