Wall clock time and date at job start Tue Mar 31 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47481 * 2 1 4 4 H 1.08996 * 109.47385 * 305.67911 * 3 2 1 5 5 N 1.46905 * 109.47154 * 65.67542 * 3 2 1 6 6 C 1.46902 * 111.00156 * 267.90590 * 5 3 2 7 7 C 1.52997 * 109.47127 * 174.81330 * 6 5 3 8 8 C 1.52999 * 109.46879 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.46994 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99389 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00115 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99697 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00094 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46967 * 60.00304 * 13 11 9 15 15 H 1.48500 * 109.46907 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47227 * 299.99932 * 13 11 9 17 17 C 1.53001 * 109.47522 * 185.67388 * 3 2 1 18 18 C 1.53002 * 109.47262 * 296.53917 * 17 3 2 19 19 C 1.53002 * 109.46696 * 56.53874 * 17 3 2 20 20 C 1.50699 * 109.47233 * 176.53818 * 17 3 2 21 21 C 1.38236 * 119.99822 * 353.38457 * 20 17 3 22 22 C 1.38235 * 119.99817 * 179.76670 * 21 20 17 23 23 C 1.38236 * 119.99915 * 0.50626 * 22 21 20 24 24 C 1.38237 * 119.99966 * 359.75568 * 23 22 21 25 25 C 1.38228 * 120.00047 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47479 * 175.35532 * 1 2 3 27 27 H 1.09000 * 109.47239 * 295.35304 * 1 2 3 28 28 H 1.09001 * 109.47104 * 55.35582 * 1 2 3 29 29 H 1.09006 * 109.47316 * 240.00157 * 2 1 3 30 30 H 1.09005 * 109.47343 * 119.99897 * 2 1 3 31 31 H 1.00903 * 110.99455 * 31.85729 * 5 3 2 32 32 H 1.08997 * 109.47131 * 54.80865 * 6 5 3 33 33 H 1.08998 * 109.46611 * 294.81398 * 6 5 3 34 34 H 1.08998 * 109.47431 * 299.99566 * 7 6 5 35 35 H 1.08997 * 109.47495 * 59.99758 * 7 6 5 36 36 H 1.08996 * 109.47123 * 299.99618 * 8 7 6 37 37 H 1.08995 * 109.47557 * 60.00044 * 8 7 6 38 38 H 0.97003 * 119.99859 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.46700 * 59.99642 * 18 17 3 40 40 H 1.09001 * 109.46944 * 179.97438 * 18 17 3 41 41 H 1.08992 * 109.46751 * 300.00080 * 18 17 3 42 42 H 1.09003 * 109.46921 * 60.00195 * 19 17 3 43 43 H 1.08996 * 109.46976 * 180.02562 * 19 17 3 44 44 H 1.09004 * 109.47149 * 299.99890 * 19 17 3 45 45 H 1.07995 * 120.00317 * 0.02562 * 21 20 17 46 46 H 1.07995 * 120.00061 * 180.23705 * 22 21 20 47 47 H 1.08001 * 119.99986 * 179.72172 * 23 22 21 48 48 H 1.08001 * 119.99806 * 179.97438 * 24 23 22 49 49 H 1.08006 * 120.00185 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5961 1.9848 -0.8347 5 7 1.6654 2.0943 1.2621 6 6 0.3760 2.7866 1.1346 7 6 -0.0419 3.3414 2.4978 8 6 -1.3845 4.0629 2.3649 9 6 -1.7959 4.6100 3.7076 10 1 -1.1630 4.4578 4.5695 11 6 -2.9799 5.3047 3.8356 12 7 -3.7501 5.4903 2.7858 13 14 -3.4901 5.9822 5.4999 14 1 -2.4601 6.9369 5.9826 15 1 -4.7926 6.6836 5.3706 16 1 -3.6229 4.8653 6.4695 17 6 3.5634 1.4448 -0.1426 18 6 4.1905 0.7589 1.0728 19 6 3.9577 0.6903 -1.4139 20 6 4.0577 2.8659 -0.2281 21 6 3.1537 3.9083 -0.3108 22 6 3.6070 5.2121 -0.3843 23 6 4.9646 5.4728 -0.3857 24 6 5.8687 4.4299 -0.3084 25 6 5.4153 3.1265 -0.2292 26 1 -0.3634 -1.0242 -0.0832 27 1 -0.3634 0.4400 0.9287 28 1 -0.3633 0.5842 -0.8455 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6453 1.4291 2.0205 32 1 -0.3795 2.0852 0.7807 33 1 0.4726 3.6063 0.4228 34 1 -0.1385 2.5217 3.2097 35 1 0.7136 4.0428 2.8518 36 1 -1.2875 4.8827 1.6532 37 1 -2.1403 3.3619 2.0108 38 1 -4.5829 5.9794 2.8758 39 1 3.8329 -0.2689 1.1346 40 1 5.2757 0.7602 0.9709 41 1 3.9095 1.2964 1.9784 42 1 3.5109 1.1790 -2.2798 43 1 5.0429 0.6916 -1.5153 44 1 3.6001 -0.3375 -1.3521 45 1 2.0931 3.7045 -0.3138 46 1 2.9007 6.0268 -0.4451 47 1 5.3189 6.4912 -0.4476 48 1 6.9294 4.6336 -0.3099 49 1 6.1217 2.3117 -0.1693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180008400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:37 Heat of formation + Delta-G solvation = 2.303557 kcal Electronic energy + Delta-G solvation = -23800.646649 eV Core-core repulsion = 20726.568246 eV Total energy + Delta-G solvation = -3074.078403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20927 -37.83030 -35.20979 -33.45376 -32.19635 -30.87103 -30.24062 -29.55910 -27.33294 -26.84850 -24.73276 -23.41139 -22.43607 -21.97354 -21.13322 -20.09774 -18.54970 -17.03014 -16.25139 -15.64595 -15.24963 -15.08276 -14.93003 -14.41677 -14.16520 -13.84008 -13.77254 -13.57229 -13.12306 -12.94450 -12.52906 -12.34604 -12.23336 -12.07185 -12.02640 -11.74497 -11.69897 -11.46491 -11.21163 -11.10660 -10.96643 -10.84485 -10.73940 -10.54571 -10.42574 -10.35826 -10.16524 -9.63182 -9.29131 -9.02334 -8.67950 -8.47385 -8.31587 -7.94281 -5.97085 -3.98948 1.58255 1.65172 3.35322 3.39388 3.42279 4.01075 4.36699 4.50121 4.54358 4.75944 5.04708 5.11793 5.15152 5.16747 5.22056 5.26781 5.33118 5.38766 5.48154 5.57956 5.61980 5.66511 5.68817 5.77126 5.81639 5.82925 5.90115 5.94900 5.98804 6.04082 6.11883 6.15493 6.24432 6.27497 6.30806 6.39483 6.43386 6.66855 6.74625 6.77634 6.87103 6.91879 7.17306 7.23762 7.43921 7.70579 7.72616 7.86918 8.03503 8.47069 9.08039 9.64918 11.14283 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.003902 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.246697 B = 7174.512688 C = 8326.832796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.153 4.153 3 C 0.093 3.907 4 H 0.076 0.924 5 N -0.678 5.678 6 C 0.046 3.954 7 C -0.107 4.107 8 C 0.024 3.976 9 C -0.518 4.518 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.012 4.012 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.053 4.053 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.123 4.123 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.338 0.662 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.012 0.988 38 H 0.260 0.740 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.133 0.867 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.413 -9.721 -9.427 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C -0.017 4.017 4 H 0.094 0.906 5 N -0.308 5.308 6 C -0.082 4.082 7 C -0.145 4.145 8 C -0.014 4.014 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.013 4.013 18 C -0.194 4.194 19 C -0.200 4.200 20 C -0.053 4.053 21 C -0.111 4.111 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.141 4.141 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.151 0.849 46 H 0.136 0.864 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.605 -9.064 -9.602 22.006 hybrid contribution -0.994 -0.208 0.949 1.390 sum 16.611 -9.271 -8.652 20.898 Atomic orbital electron populations 1.21992 0.95658 1.01448 1.02703 1.22363 0.96286 0.98099 1.02413 1.21619 0.93670 0.92707 0.93729 0.90599 1.60729 1.32371 1.32981 1.04762 1.22431 0.88422 0.97320 1.00007 1.21614 0.99896 0.99354 0.93633 1.19041 0.90348 0.95007 0.96991 1.21224 1.05029 1.34354 0.95061 0.92812 1.25013 0.96630 0.96292 0.96493 1.69957 1.12849 1.41730 1.29097 0.86678 0.77725 0.79204 0.84514 1.20241 1.21324 1.20296 1.19481 0.94683 0.91681 0.95424 1.21872 0.99687 0.99701 0.98166 1.21984 1.01235 0.99913 0.96829 1.19609 0.92785 0.94563 0.98358 1.21391 1.00640 0.91824 0.97262 1.21216 0.95515 0.97126 1.00151 1.21068 0.93587 0.98665 1.01477 1.20989 0.99022 0.92972 1.01718 1.20893 0.95147 0.96328 1.01758 0.93040 0.91569 0.92660 0.91422 0.91633 0.84413 0.94381 0.91779 0.93832 0.92692 0.96681 0.96914 0.93027 0.92807 0.93153 0.91271 0.92663 0.92588 0.92073 0.84947 0.86405 0.86831 0.86892 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.56 37.16 0.32 -1.51 16 2 C -0.15 -1.55 4.64 -26.73 -0.12 -1.67 16 3 C 0.09 1.07 0.86 -67.71 -0.06 1.01 16 4 H 0.08 0.95 6.61 -51.93 -0.34 0.61 16 5 N -0.68 -9.16 4.17 -106.73 -0.45 -9.61 16 6 C 0.05 0.76 4.75 -3.82 -0.02 0.74 16 7 C -0.11 -2.19 5.36 -26.73 -0.14 -2.33 16 8 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 9 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 10 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 13 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C -0.01 -0.13 0.46 -155.66 -0.07 -0.20 16 18 C -0.14 -1.37 7.67 37.16 0.29 -1.09 16 19 C -0.14 -1.29 7.91 37.16 0.29 -0.99 16 20 C -0.05 -0.66 4.62 -104.62 -0.48 -1.14 16 21 C -0.09 -1.30 8.48 -39.58 -0.34 -1.64 16 22 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 23 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 24 C -0.13 -1.49 10.05 -39.59 -0.40 -1.88 16 25 C -0.12 -1.43 8.77 -39.59 -0.35 -1.78 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.86 5.99 -51.93 -0.31 0.55 16 28 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.07 0.62 6.05 -51.93 -0.31 0.30 16 30 H 0.07 0.64 6.68 -51.93 -0.35 0.30 16 31 H 0.34 4.46 7.85 -39.29 -0.31 4.15 16 32 H 0.04 0.62 4.84 -51.93 -0.25 0.37 16 33 H 0.06 1.10 6.42 -51.93 -0.33 0.76 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.05 0.48 6.65 -51.93 -0.35 0.14 16 40 H 0.05 0.47 7.06 -51.93 -0.37 0.10 16 41 H 0.07 0.80 7.33 -51.93 -0.38 0.42 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.47 7.79 -51.93 -0.40 0.07 16 44 H 0.06 0.49 6.24 -51.93 -0.32 0.17 16 45 H 0.13 1.93 3.34 -52.49 -0.18 1.75 16 46 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.11 1.11 7.11 -52.48 -0.37 0.74 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -29.85 367.22 -9.97 -39.82 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.35 Total: 3.45 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -2.43 Total: -29.66 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.29 Total: -36.03 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.85 -9.97 -39.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180008400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.119 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds