Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47481 * 2 1 4 4 H 1.08996 * 109.47385 * 305.67911 * 3 2 1 5 5 N 1.46905 * 109.47154 * 65.67542 * 3 2 1 6 6 C 1.46902 * 111.00156 * 267.90590 * 5 3 2 7 7 C 1.52997 * 109.47127 * 174.81330 * 6 5 3 8 8 C 1.52999 * 109.46879 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.46994 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99389 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00115 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99697 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00094 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46967 * 60.00304 * 13 11 9 15 15 H 1.48500 * 109.46907 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47227 * 299.99932 * 13 11 9 17 17 C 1.53001 * 109.47522 * 185.67388 * 3 2 1 18 18 C 1.53002 * 109.47262 * 296.53917 * 17 3 2 19 19 C 1.53002 * 109.46696 * 56.53874 * 17 3 2 20 20 C 1.50699 * 109.47233 * 176.53818 * 17 3 2 21 21 C 1.38236 * 119.99822 * 353.38457 * 20 17 3 22 22 C 1.38235 * 119.99817 * 179.76670 * 21 20 17 23 23 C 1.38236 * 119.99915 * 0.50626 * 22 21 20 24 24 C 1.38237 * 119.99966 * 359.75568 * 23 22 21 25 25 C 1.38228 * 120.00047 * 359.97438 * 24 23 22 26 26 H 1.08994 * 109.47479 * 175.35532 * 1 2 3 27 27 H 1.09000 * 109.47239 * 295.35304 * 1 2 3 28 28 H 1.09001 * 109.47104 * 55.35582 * 1 2 3 29 29 H 1.09006 * 109.47316 * 240.00157 * 2 1 3 30 30 H 1.09005 * 109.47343 * 119.99897 * 2 1 3 31 31 H 1.00903 * 110.99455 * 31.85729 * 5 3 2 32 32 H 1.08997 * 109.47131 * 54.80865 * 6 5 3 33 33 H 1.08998 * 109.46611 * 294.81398 * 6 5 3 34 34 H 1.08998 * 109.47431 * 299.99566 * 7 6 5 35 35 H 1.08997 * 109.47495 * 59.99758 * 7 6 5 36 36 H 1.08996 * 109.47123 * 299.99618 * 8 7 6 37 37 H 1.08995 * 109.47557 * 60.00044 * 8 7 6 38 38 H 0.97003 * 119.99859 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.46700 * 59.99642 * 18 17 3 40 40 H 1.09001 * 109.46944 * 179.97438 * 18 17 3 41 41 H 1.08992 * 109.46751 * 300.00080 * 18 17 3 42 42 H 1.09003 * 109.46921 * 60.00195 * 19 17 3 43 43 H 1.08996 * 109.46976 * 180.02562 * 19 17 3 44 44 H 1.09004 * 109.47149 * 299.99890 * 19 17 3 45 45 H 1.07995 * 120.00317 * 0.02562 * 21 20 17 46 46 H 1.07995 * 120.00061 * 180.23705 * 22 21 20 47 47 H 1.08001 * 119.99986 * 179.72172 * 23 22 21 48 48 H 1.08001 * 119.99806 * 179.97438 * 24 23 22 49 49 H 1.08006 * 120.00185 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5961 1.9848 -0.8347 5 7 1.6654 2.0943 1.2621 6 6 0.3760 2.7866 1.1346 7 6 -0.0419 3.3414 2.4978 8 6 -1.3845 4.0629 2.3649 9 6 -1.7959 4.6100 3.7076 10 1 -1.1630 4.4578 4.5695 11 6 -2.9799 5.3047 3.8356 12 7 -3.7501 5.4903 2.7858 13 14 -3.4901 5.9822 5.4999 14 1 -2.4601 6.9369 5.9826 15 1 -4.7926 6.6836 5.3706 16 1 -3.6229 4.8653 6.4695 17 6 3.5634 1.4448 -0.1426 18 6 4.1905 0.7589 1.0728 19 6 3.9577 0.6903 -1.4139 20 6 4.0577 2.8659 -0.2281 21 6 3.1537 3.9083 -0.3108 22 6 3.6070 5.2121 -0.3843 23 6 4.9646 5.4728 -0.3857 24 6 5.8687 4.4299 -0.3084 25 6 5.4153 3.1265 -0.2292 26 1 -0.3634 -1.0242 -0.0832 27 1 -0.3634 0.4400 0.9287 28 1 -0.3633 0.5842 -0.8455 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6453 1.4291 2.0205 32 1 -0.3795 2.0852 0.7807 33 1 0.4726 3.6063 0.4228 34 1 -0.1385 2.5217 3.2097 35 1 0.7136 4.0428 2.8518 36 1 -1.2875 4.8827 1.6532 37 1 -2.1403 3.3619 2.0108 38 1 -4.5829 5.9794 2.8758 39 1 3.8329 -0.2689 1.1346 40 1 5.2757 0.7602 0.9709 41 1 3.9095 1.2964 1.9784 42 1 3.5109 1.1790 -2.2798 43 1 5.0429 0.6916 -1.5153 44 1 3.6001 -0.3375 -1.3521 45 1 2.0931 3.7045 -0.3138 46 1 2.9007 6.0268 -0.4451 47 1 5.3189 6.4912 -0.4476 48 1 6.9294 4.6336 -0.3099 49 1 6.1217 2.3117 -0.1693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180008400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -12.097077 kcal Electronic energy + Delta-G solvation = -23801.271108 eV Core-core repulsion = 20726.568246 eV Total energy + Delta-G solvation = -3074.702862 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14559 -38.83390 -36.61620 -35.12826 -33.62724 -32.10743 -31.49556 -30.46783 -28.50245 -28.01934 -26.20954 -24.31807 -23.89251 -23.14972 -22.25455 -21.60305 -19.49874 -18.51374 -17.94207 -16.79283 -16.56530 -16.21072 -16.06739 -15.84559 -15.29617 -14.95649 -14.78778 -14.62991 -14.36843 -14.07797 -13.91231 -13.72508 -13.36908 -13.23253 -12.98503 -12.96361 -12.87846 -12.67379 -12.59813 -12.44984 -12.36725 -12.11511 -11.94110 -11.78421 -11.63855 -11.58231 -11.38036 -11.23377 -11.18565 -10.87435 -10.55162 -9.65252 -9.41663 -9.06150 -8.20317 -6.31298 0.63044 0.68841 1.38707 1.41940 1.49839 2.40405 3.05514 3.12669 3.29293 3.66671 3.86275 4.13306 4.21135 4.25320 4.26663 4.29966 4.37557 4.42178 4.44816 4.47398 4.58946 4.75584 4.76187 4.77971 4.80397 4.87750 4.92593 4.97260 5.04631 5.09145 5.13003 5.14488 5.19228 5.25788 5.28445 5.32262 5.37235 5.39418 5.45535 5.52793 5.61376 5.73910 5.76132 5.81321 5.86285 5.95483 6.18609 6.29039 6.31571 6.61664 6.85353 7.37841 8.91322 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.003902 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.246697 B = 7174.512688 C = 8326.832796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.061 0.939 5 N -0.675 5.675 6 C 0.064 3.936 7 C -0.090 4.090 8 C 0.029 3.971 9 C -0.543 4.543 10 H 0.057 0.943 11 C 0.001 3.999 12 N -0.933 5.933 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.266 1.266 17 C -0.008 4.008 18 C -0.134 4.134 19 C -0.139 4.139 20 C -0.059 4.059 21 C -0.116 4.116 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.126 4.126 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.342 0.658 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.045 0.955 36 H -0.012 1.012 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.130 0.870 48 H 0.139 0.861 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.436 -11.176 -8.823 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.184 4.184 3 C -0.015 4.015 4 H 0.079 0.921 5 N -0.305 5.305 6 C -0.065 4.065 7 C -0.128 4.128 8 C -0.009 4.009 9 C -0.581 4.581 10 H 0.075 0.925 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.788 3.212 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.008 4.008 18 C -0.191 4.191 19 C -0.196 4.196 20 C -0.059 4.059 21 C -0.134 4.134 22 C -0.163 4.163 23 C -0.157 4.157 24 C -0.148 4.148 25 C -0.144 4.144 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.006 0.994 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.135 0.865 46 H 0.130 0.870 47 H 0.148 0.852 48 H 0.157 0.843 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 19.645 -10.531 -9.001 24.039 hybrid contribution -1.608 0.257 0.712 1.777 sum 18.037 -10.274 -8.289 22.352 Atomic orbital electron populations 1.21970 0.96741 1.01891 1.01179 1.22307 0.95172 0.97086 1.03786 1.21635 0.94670 0.93253 0.91892 0.92066 1.60643 1.30128 1.33618 1.06158 1.22086 0.90053 0.97261 0.97101 1.21346 0.96617 0.98760 0.96110 1.18931 0.92621 0.93993 0.95366 1.21664 1.05550 1.34828 0.96090 0.92465 1.25963 0.96575 0.96459 1.00715 1.70092 1.13317 1.42404 1.31533 0.85528 0.77498 0.78764 0.79438 1.19338 1.20697 1.19081 1.19483 0.93505 0.91034 0.96800 1.21850 1.00441 1.00082 0.96740 1.21968 1.01978 1.00285 0.95388 1.19846 0.93145 0.95077 0.97847 1.21395 1.00334 0.92681 0.98968 1.21342 0.96483 0.97073 1.01368 1.21308 0.93050 1.00011 1.01299 1.21351 1.00263 0.92717 1.00467 1.21190 0.95062 0.97185 1.00929 0.91688 0.93642 0.93537 0.89538 0.90587 0.83954 0.94262 0.92937 0.93268 0.93605 0.99406 0.99099 0.92791 0.91317 0.91952 0.93063 0.93346 0.91470 0.90549 0.86496 0.87046 0.85214 0.84268 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.56 71.98 0.62 -2.91 16 2 C -0.14 -2.66 4.64 30.59 0.14 -2.52 16 3 C 0.10 2.12 0.86 44.91 0.04 2.15 16 4 H 0.06 1.56 6.61 -2.39 -0.02 1.54 16 5 N -0.67 -18.30 4.17 -491.57 -2.05 -20.35 16 6 C 0.06 2.18 4.75 86.30 0.41 2.59 16 7 C -0.09 -3.82 5.36 30.59 0.16 -3.66 16 8 C 0.03 1.54 4.97 29.85 0.15 1.69 16 9 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 10 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 11 C 0.00 0.03 5.46 84.65 0.46 0.49 16 12 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 13 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 C -0.01 -0.15 0.46 -52.93 -0.02 -0.17 16 18 C -0.13 -2.33 7.67 71.98 0.55 -1.78 16 19 C -0.14 -2.13 7.91 71.98 0.57 -1.56 16 20 C -0.06 -1.41 4.62 -19.87 -0.09 -1.50 16 21 C -0.12 -3.32 8.48 22.27 0.19 -3.13 16 22 C -0.14 -4.06 10.05 22.27 0.22 -3.84 16 23 C -0.14 -3.31 10.05 22.27 0.22 -3.09 16 24 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 25 C -0.13 -2.65 8.77 22.27 0.20 -2.45 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.18 5.99 -2.39 -0.01 1.17 16 28 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.09 1.31 6.05 -2.38 -0.01 1.29 16 30 H 0.08 1.28 6.68 -2.38 -0.02 1.26 16 31 H 0.34 8.82 7.85 -89.69 -0.70 8.11 16 32 H 0.04 1.34 4.84 -2.39 -0.01 1.33 16 33 H 0.05 1.92 6.42 -2.39 -0.02 1.91 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.07 0.99 6.65 -2.39 -0.02 0.98 16 40 H 0.06 0.94 7.06 -2.39 -0.02 0.92 16 41 H 0.05 1.09 7.33 -2.39 -0.02 1.07 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 44 H 0.08 0.95 6.24 -2.38 -0.01 0.93 16 45 H 0.12 3.63 3.34 -2.91 -0.01 3.62 16 46 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 47 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 49 H 0.14 2.19 7.11 -2.91 -0.02 2.17 16 Total: -1.00 -65.59 367.22 4.75 -60.84 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.22 Total: 23.67 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 4.28 Total: -53.77 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -1.77 Total: -77.90 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.59 4.75 -60.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180008400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.746 kcal (2) G-P(sol) polarization free energy of solvation -65.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds