Wall clock time and date at job start Tue Mar 31 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 120.00485 * 2 1 4 4 C 1.38209 * 120.00133 * 180.23626 * 3 2 1 5 5 C 1.38248 * 120.00284 * 359.80587 * 4 3 2 6 6 C 1.38222 * 119.99905 * 359.97438 * 5 4 3 7 7 C 1.38217 * 119.99697 * 179.79212 * 2 1 3 8 8 C 1.50699 * 120.00426 * 359.97438 * 7 2 1 9 9 H 1.09008 * 109.46905 * 335.43678 * 8 7 2 10 10 N 1.46903 * 109.47422 * 215.43860 * 8 7 2 11 11 C 1.46895 * 111.00055 * 137.30136 * 10 8 7 12 12 C 1.53004 * 109.46888 * 185.26661 * 11 10 8 13 13 C 1.52998 * 109.47020 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47157 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00036 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47025 * 89.99783 * 18 16 14 20 20 H 1.48497 * 109.47169 * 210.00337 * 18 16 14 21 21 H 1.48500 * 109.47080 * 329.99739 * 18 16 14 22 22 C 1.53000 * 109.46974 * 95.43076 * 8 7 2 23 23 C 1.52999 * 109.46842 * 180.61143 * 22 8 7 24 24 C 1.52997 * 109.47395 * 300.61398 * 22 8 7 25 25 C 1.52997 * 109.46668 * 60.61780 * 22 8 7 26 26 H 1.09007 * 109.47021 * 274.97202 * 1 2 3 27 27 H 1.08993 * 109.47214 * 34.97223 * 1 2 3 28 28 H 1.08997 * 109.47477 * 154.97997 * 1 2 3 29 29 H 1.08002 * 119.99466 * 0.06516 * 3 2 1 30 30 H 1.08006 * 119.99625 * 179.83692 * 4 3 2 31 31 H 1.07998 * 120.00559 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.99701 * 179.97438 * 6 5 4 33 33 H 1.00901 * 110.99567 * 261.25461 * 10 8 7 34 34 H 1.08997 * 109.47266 * 305.26173 * 11 10 8 35 35 H 1.09003 * 109.47242 * 65.26436 * 11 10 8 36 36 H 1.09005 * 109.46489 * 299.99641 * 12 11 10 37 37 H 1.08995 * 109.47372 * 59.99493 * 12 11 10 38 38 H 1.09003 * 109.46885 * 299.99856 * 13 12 11 39 39 H 1.08995 * 109.47666 * 59.99423 * 13 12 11 40 40 H 0.97007 * 119.99625 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47197 * 58.24118 * 23 22 8 42 42 H 1.08998 * 109.46984 * 178.23300 * 23 22 8 43 43 H 1.08996 * 109.47866 * 298.23798 * 23 22 8 44 44 H 1.08999 * 109.46964 * 54.02686 * 24 22 8 45 45 H 1.08999 * 109.46807 * 174.02285 * 24 22 8 46 46 H 1.09002 * 109.47333 * 294.02686 * 24 22 8 47 47 H 1.09001 * 109.47689 * 55.78600 * 25 22 8 48 48 H 1.09000 * 109.47104 * 175.78755 * 25 22 8 49 49 H 1.08998 * 109.46988 * 295.78433 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5805 -1.1971 -0.0012 7 6 2.1980 -1.1970 0.0043 8 6 1.4445 -2.5021 0.0097 9 1 0.4535 -2.3478 0.4367 10 7 2.1772 -3.4873 0.8162 11 6 1.2608 -4.2547 1.6702 12 6 2.0687 -5.1752 2.5872 13 6 1.1143 -5.9749 3.4762 14 6 1.9100 -6.8812 4.3799 15 1 2.9886 -6.8865 4.3252 16 6 1.2611 -7.7034 5.2764 17 7 -0.0524 -7.6965 5.3433 18 14 2.2474 -8.8273 6.3960 19 1 2.5634 -8.1140 7.6595 20 1 1.4530 -10.0445 6.7000 21 1 3.5101 -9.2169 5.7184 22 6 1.3072 -3.0176 -1.4243 23 6 0.5290 -4.3348 -1.4204 24 6 0.5574 -1.9847 -2.2680 25 6 2.6981 -3.2487 -2.0184 26 1 -0.3633 0.0891 1.0239 27 1 -0.3633 0.8420 -0.5890 28 1 -0.3634 -0.9312 -0.4346 29 1 1.6583 2.1326 0.0011 30 1 4.1205 2.1326 -0.0076 31 1 5.3516 -0.0002 -0.0101 32 1 4.1206 -2.1324 -0.0023 33 1 2.7236 -4.1002 0.2298 34 1 0.6678 -3.5688 2.2751 35 1 0.5984 -4.8541 1.0457 36 1 2.6618 -5.8612 1.9822 37 1 2.7312 -4.5758 3.2116 38 1 0.5209 -5.2893 4.0811 39 1 0.4521 -6.5744 2.8516 40 1 -0.5089 -8.2748 5.9743 41 1 -0.4502 -4.1770 -0.9685 42 1 0.4040 -4.6860 -2.4447 43 1 1.0787 -5.0800 -0.8454 44 1 1.0542 -1.0181 -2.1850 45 1 0.5521 -2.3021 -3.3107 46 1 -0.4682 -1.8980 -1.9093 47 1 3.2594 -3.9273 -1.3762 48 1 2.6006 -3.6861 -3.0121 49 1 3.2251 -2.2973 -2.0904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180089565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:34 Heat of formation + Delta-G solvation = -2.550296 kcal Electronic energy + Delta-G solvation = -23753.969068 eV Core-core repulsion = 20679.680185 eV Total energy + Delta-G solvation = -3074.288882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45477 -37.84548 -34.98905 -33.07976 -32.91443 -31.57329 -30.29569 -27.66722 -27.16377 -27.09018 -26.29827 -24.56598 -22.47417 -21.47782 -20.98604 -20.16785 -18.60079 -16.57100 -16.24623 -16.13050 -15.60712 -14.98694 -14.58638 -14.38420 -14.20658 -14.03584 -13.83919 -13.37903 -13.13249 -13.04484 -12.58974 -12.43138 -12.22794 -12.16785 -12.11144 -11.85252 -11.75426 -11.71489 -11.39005 -11.20152 -11.05171 -10.88229 -10.82287 -10.63238 -10.52119 -10.48295 -10.29792 -9.65064 -9.30783 -9.03103 -8.65544 -8.45770 -8.31314 -8.07436 -5.96690 -3.98459 1.41935 1.49934 3.34356 3.40244 3.43914 3.80168 4.36257 4.50531 4.66931 4.70523 4.80238 4.87925 4.97189 5.10208 5.16788 5.27064 5.38392 5.39199 5.40098 5.52993 5.55728 5.61216 5.64742 5.69248 5.73434 5.79960 5.80532 5.86192 5.88710 5.95056 6.01983 6.12459 6.14016 6.21765 6.23602 6.27985 6.39421 6.53913 6.60628 6.70152 6.77123 6.88933 7.09592 7.18798 7.42134 7.67899 7.72506 7.88003 8.04153 8.47779 9.08808 9.65383 11.14756 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.003389 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.201119 B = 8259.254359 C = 8719.326959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.086 4.086 7 C -0.056 4.056 8 C 0.129 3.871 9 H 0.082 0.918 10 N -0.682 5.682 11 C 0.057 3.943 12 C -0.105 4.105 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.086 4.086 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.338 0.662 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.260 0.740 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 16.196 -17.091 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.084 4.084 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.104 4.104 7 C -0.056 4.056 8 C 0.019 3.981 9 H 0.100 0.900 10 N -0.314 5.314 11 C -0.071 4.071 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.087 4.087 23 C -0.205 4.205 24 C -0.201 4.201 25 C -0.203 4.203 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.885 16.532 -16.492 23.529 hybrid contribution 0.082 -1.179 0.138 1.190 sum 2.967 15.354 -16.354 22.627 Atomic orbital electron populations 1.21079 0.91786 1.03092 1.02451 1.19701 0.95753 0.92656 1.00280 1.20895 0.94232 0.97140 1.02214 1.21028 0.94272 0.97825 1.01242 1.21121 0.99619 0.92708 1.01647 1.20981 0.93753 0.97881 0.97802 1.19657 0.93796 0.93569 0.98622 1.20560 0.96299 0.90006 0.91279 0.89962 1.60658 1.25964 1.19824 1.24958 1.22272 0.94441 0.95557 0.94875 1.21597 0.98936 0.96610 0.97183 1.19059 0.94283 0.94339 0.93835 1.21263 0.93152 1.21900 1.19273 0.92712 1.25025 0.94861 0.97257 0.97369 1.69971 1.07202 1.39540 1.36933 0.86608 0.80075 0.80288 0.81119 1.20672 1.21280 1.19890 1.21076 0.96202 0.95848 0.95605 1.22000 1.00176 0.96440 1.01869 1.22035 0.99870 0.99086 0.99125 1.21986 0.95958 1.02076 1.00326 0.91302 0.91822 0.90561 0.86655 0.86731 0.86591 0.85736 0.84086 0.91724 0.95216 0.93793 0.92653 0.96673 0.96859 0.93087 0.92470 0.92508 0.92052 0.91822 0.92926 0.92473 0.92266 0.92757 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.69 36.00 0.31 -0.93 16 2 C -0.08 -0.96 4.77 -104.62 -0.50 -1.46 16 3 C -0.13 -1.36 9.72 -39.59 -0.38 -1.75 16 4 C -0.13 -1.33 10.05 -39.59 -0.40 -1.73 16 5 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 6 C -0.09 -1.05 7.30 -39.58 -0.29 -1.34 16 7 C -0.06 -0.68 3.86 -104.62 -0.40 -1.09 16 8 C 0.13 1.59 1.44 -68.86 -0.10 1.49 16 9 H 0.08 1.08 5.68 -51.92 -0.29 0.79 16 10 N -0.68 -9.79 5.10 -107.95 -0.55 -10.34 16 11 C 0.06 0.98 5.08 -3.82 -0.02 0.96 16 12 C -0.11 -2.20 5.46 -26.73 -0.15 -2.35 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.09 -0.90 0.55 -154.51 -0.08 -0.98 16 23 C -0.15 -1.63 7.32 37.16 0.27 -1.35 16 24 C -0.14 -1.35 7.05 37.16 0.26 -1.09 16 25 C -0.15 -1.46 7.29 37.16 0.27 -1.18 16 26 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.08 0.72 3.57 -51.93 -0.19 0.54 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.11 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.50 7.17 -52.49 -0.38 1.13 16 33 H 0.34 4.56 5.59 -39.29 -0.22 4.34 16 34 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 35 H 0.03 0.50 6.16 -51.93 -0.32 0.18 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.75 6.12 -51.93 -0.32 0.44 16 44 H 0.06 0.63 5.79 -51.93 -0.30 0.33 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.51 6.65 -51.93 -0.35 0.16 16 47 H 0.06 0.60 6.10 -51.93 -0.32 0.29 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.64 6.21 -51.93 -0.32 0.32 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -30.38 366.02 -9.92 -40.30 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.45 Total: 2.08 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -2.15 Total: -27.94 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.19 Total: -36.90 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.38 -9.92 -40.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180089565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.752 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds