Wall clock time and date at job start Tue Mar 31 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 120.00485 * 2 1 4 4 C 1.38209 * 120.00133 * 180.23626 * 3 2 1 5 5 C 1.38248 * 120.00284 * 359.80587 * 4 3 2 6 6 C 1.38222 * 119.99905 * 359.97438 * 5 4 3 7 7 C 1.38217 * 119.99697 * 179.79212 * 2 1 3 8 8 C 1.50699 * 120.00426 * 359.97438 * 7 2 1 9 9 H 1.09008 * 109.46905 * 335.43678 * 8 7 2 10 10 N 1.46903 * 109.47422 * 215.43860 * 8 7 2 11 11 C 1.46895 * 111.00055 * 137.30136 * 10 8 7 12 12 C 1.53004 * 109.46888 * 185.26661 * 11 10 8 13 13 C 1.52998 * 109.47020 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47157 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00036 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47025 * 89.99783 * 18 16 14 20 20 H 1.48497 * 109.47169 * 210.00337 * 18 16 14 21 21 H 1.48500 * 109.47080 * 329.99739 * 18 16 14 22 22 C 1.53000 * 109.46974 * 95.43076 * 8 7 2 23 23 C 1.52999 * 109.46842 * 180.61143 * 22 8 7 24 24 C 1.52997 * 109.47395 * 300.61398 * 22 8 7 25 25 C 1.52997 * 109.46668 * 60.61780 * 22 8 7 26 26 H 1.09007 * 109.47021 * 274.97202 * 1 2 3 27 27 H 1.08993 * 109.47214 * 34.97223 * 1 2 3 28 28 H 1.08997 * 109.47477 * 154.97997 * 1 2 3 29 29 H 1.08002 * 119.99466 * 0.06516 * 3 2 1 30 30 H 1.08006 * 119.99625 * 179.83692 * 4 3 2 31 31 H 1.07998 * 120.00559 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.99701 * 179.97438 * 6 5 4 33 33 H 1.00901 * 110.99567 * 261.25461 * 10 8 7 34 34 H 1.08997 * 109.47266 * 305.26173 * 11 10 8 35 35 H 1.09003 * 109.47242 * 65.26436 * 11 10 8 36 36 H 1.09005 * 109.46489 * 299.99641 * 12 11 10 37 37 H 1.08995 * 109.47372 * 59.99493 * 12 11 10 38 38 H 1.09003 * 109.46885 * 299.99856 * 13 12 11 39 39 H 1.08995 * 109.47666 * 59.99423 * 13 12 11 40 40 H 0.97007 * 119.99625 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47197 * 58.24118 * 23 22 8 42 42 H 1.08998 * 109.46984 * 178.23300 * 23 22 8 43 43 H 1.08996 * 109.47866 * 298.23798 * 23 22 8 44 44 H 1.08999 * 109.46964 * 54.02686 * 24 22 8 45 45 H 1.08999 * 109.46807 * 174.02285 * 24 22 8 46 46 H 1.09002 * 109.47333 * 294.02686 * 24 22 8 47 47 H 1.09001 * 109.47689 * 55.78600 * 25 22 8 48 48 H 1.09000 * 109.47104 * 175.78755 * 25 22 8 49 49 H 1.08998 * 109.46988 * 295.78433 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5805 -1.1971 -0.0012 7 6 2.1980 -1.1970 0.0043 8 6 1.4445 -2.5021 0.0097 9 1 0.4535 -2.3478 0.4367 10 7 2.1772 -3.4873 0.8162 11 6 1.2608 -4.2547 1.6702 12 6 2.0687 -5.1752 2.5872 13 6 1.1143 -5.9749 3.4762 14 6 1.9100 -6.8812 4.3799 15 1 2.9886 -6.8865 4.3252 16 6 1.2611 -7.7034 5.2764 17 7 -0.0524 -7.6965 5.3433 18 14 2.2474 -8.8273 6.3960 19 1 2.5634 -8.1140 7.6595 20 1 1.4530 -10.0445 6.7000 21 1 3.5101 -9.2169 5.7184 22 6 1.3072 -3.0176 -1.4243 23 6 0.5290 -4.3348 -1.4204 24 6 0.5574 -1.9847 -2.2680 25 6 2.6981 -3.2487 -2.0184 26 1 -0.3633 0.0891 1.0239 27 1 -0.3633 0.8420 -0.5890 28 1 -0.3634 -0.9312 -0.4346 29 1 1.6583 2.1326 0.0011 30 1 4.1205 2.1326 -0.0076 31 1 5.3516 -0.0002 -0.0101 32 1 4.1206 -2.1324 -0.0023 33 1 2.7236 -4.1002 0.2298 34 1 0.6678 -3.5688 2.2751 35 1 0.5984 -4.8541 1.0457 36 1 2.6618 -5.8612 1.9822 37 1 2.7312 -4.5758 3.2116 38 1 0.5209 -5.2893 4.0811 39 1 0.4521 -6.5744 2.8516 40 1 -0.5089 -8.2748 5.9743 41 1 -0.4502 -4.1770 -0.9685 42 1 0.4040 -4.6860 -2.4447 43 1 1.0787 -5.0800 -0.8454 44 1 1.0542 -1.0181 -2.1850 45 1 0.5521 -2.3021 -3.3107 46 1 -0.4682 -1.8980 -1.9093 47 1 3.2594 -3.9273 -1.3762 48 1 2.6006 -3.6861 -3.0121 49 1 3.2251 -2.2973 -2.0904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180089565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:34 Heat of formation + Delta-G solvation = -17.487023 kcal Electronic energy + Delta-G solvation = -23754.616773 eV Core-core repulsion = 20679.680185 eV Total energy + Delta-G solvation = -3074.936587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36230 -38.78117 -36.54824 -34.88452 -33.74080 -32.94646 -31.64180 -28.65732 -28.22071 -28.00989 -27.52963 -25.88072 -24.05909 -22.47923 -22.00473 -21.74445 -19.54190 -18.49338 -17.43094 -17.16170 -16.69632 -16.41710 -15.84022 -15.70461 -15.36040 -15.04957 -14.83950 -14.43426 -14.24885 -14.11408 -13.90393 -13.65495 -13.53172 -13.23423 -13.11590 -12.99685 -12.89021 -12.70190 -12.64345 -12.52340 -12.43215 -12.34543 -12.05050 -11.95248 -11.70304 -11.55575 -11.39372 -11.37774 -11.29159 -11.01685 -10.55238 -9.51535 -9.36400 -9.22259 -8.20067 -6.30974 0.56588 0.64100 1.39579 1.41136 1.52252 2.40909 2.93257 3.12977 3.26145 3.78058 3.81148 3.91605 4.08125 4.17648 4.21581 4.30700 4.33100 4.40163 4.49910 4.52761 4.57979 4.73297 4.74432 4.75973 4.81013 4.82343 4.88523 4.94540 4.97428 5.00572 5.03404 5.09470 5.11058 5.13933 5.25668 5.27688 5.32326 5.41175 5.43565 5.46441 5.52716 5.69766 5.74932 5.76633 5.85398 5.86691 6.16389 6.26149 6.30511 6.53243 6.85778 7.38173 8.91810 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.003389 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.201119 B = 8259.254359 C = 8719.326959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.129 4.129 5 C -0.142 4.142 6 C -0.100 4.100 7 C -0.070 4.070 8 C 0.133 3.867 9 H 0.072 0.928 10 N -0.682 5.682 11 C 0.073 3.927 12 C -0.090 4.090 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.058 0.942 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.263 1.263 22 C -0.080 4.080 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.143 4.143 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.344 0.656 34 H 0.054 0.946 35 H 0.032 0.968 36 H 0.049 0.951 37 H 0.047 0.953 38 H -0.011 1.011 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 16.970 -17.908 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.118 4.118 7 C -0.071 4.071 8 C 0.023 3.977 9 H 0.091 0.909 10 N -0.315 5.315 11 C -0.056 4.056 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.187 1.187 22 C -0.081 4.081 23 C -0.204 4.204 24 C -0.196 4.196 25 C -0.200 4.200 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.007 0.993 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.886 17.320 -17.326 24.805 hybrid contribution -0.238 -1.365 0.377 1.436 sum 3.648 15.954 -16.949 23.561 Atomic orbital electron populations 1.21095 0.90841 1.03885 1.02475 1.19931 0.96633 0.92680 1.00158 1.21200 0.94613 0.97683 1.01590 1.21351 0.94474 0.98562 1.00278 1.21367 1.00578 0.92611 1.01402 1.21049 0.93866 0.98278 0.98644 1.19679 0.93984 0.93650 0.99739 1.20539 0.95534 0.89660 0.92000 0.90945 1.60557 1.25606 1.19672 1.25652 1.21936 0.94101 0.94905 0.94665 1.21343 0.97943 0.96604 0.96907 1.18953 0.94491 0.93857 0.93773 1.21695 0.93614 1.22673 1.20110 0.92382 1.25979 0.95978 0.98878 0.98981 1.70100 1.08992 1.40460 1.37811 0.85454 0.78716 0.78042 0.78887 1.19832 1.20594 1.18734 1.21012 0.96717 0.95796 0.94622 1.21988 0.99658 0.96343 1.02399 1.21985 0.99795 0.98431 0.99419 1.21953 0.95384 1.01952 1.00719 0.91799 0.90012 0.90634 0.84701 0.84489 0.85077 0.86220 0.83439 0.92776 0.94949 0.93216 0.93386 0.99297 0.98949 0.92780 0.93047 0.91092 0.93605 0.92105 0.91870 0.92095 0.92818 0.91636 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.69 71.24 0.62 -1.69 16 2 C -0.09 -2.03 4.77 -19.87 -0.09 -2.13 16 3 C -0.13 -2.61 9.72 22.27 0.22 -2.39 16 4 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 5 C -0.14 -2.96 10.05 22.27 0.22 -2.74 16 6 C -0.10 -2.38 7.30 22.27 0.16 -2.21 16 7 C -0.07 -1.67 3.86 -19.87 -0.08 -1.75 16 8 C 0.13 3.23 1.44 44.17 0.06 3.30 16 9 H 0.07 1.91 5.68 -2.38 -0.01 1.90 16 10 N -0.68 -19.64 5.10 -495.44 -2.52 -22.17 16 11 C 0.07 2.56 5.08 86.31 0.44 3.00 16 12 C -0.09 -3.84 5.46 30.59 0.17 -3.67 16 13 C 0.03 1.46 4.97 29.85 0.15 1.61 16 14 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 18 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 C -0.08 -1.61 0.55 -52.18 -0.03 -1.64 16 23 C -0.15 -3.13 7.32 71.98 0.53 -2.61 16 24 C -0.14 -2.39 7.05 71.98 0.51 -1.89 16 25 C -0.14 -2.68 7.29 71.98 0.52 -2.16 16 26 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 28 H 0.07 1.37 3.57 -2.39 -0.01 1.36 16 29 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.12 2.86 7.17 -2.91 -0.02 2.84 16 33 H 0.34 9.23 5.59 -89.69 -0.50 8.73 16 34 H 0.05 2.01 7.97 -2.39 -0.02 1.99 16 35 H 0.03 1.12 6.16 -2.39 -0.01 1.10 16 36 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.04 1.11 6.12 -2.39 -0.01 1.10 16 44 H 0.06 1.10 5.79 -2.39 -0.01 1.09 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.00 6.65 -2.39 -0.02 0.98 16 47 H 0.05 1.06 6.10 -2.39 -0.01 1.04 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.19 6.21 -2.39 -0.01 1.18 16 Total: -1.00 -65.17 366.02 4.51 -60.66 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.41 Total: 22.19 kcal Atomic # 6 Polarization: -54.64 SS G_CDS: 4.32 Total: -50.32 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.24 Total: -79.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.17 4.51 -60.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180089565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.169 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds