Wall clock time and date at job start Tue Mar 31 2020 06:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00239 * 2 1 4 4 H 1.48497 * 109.47542 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47262 * 300.00390 * 3 2 1 6 6 H 1.48512 * 109.46995 * 59.99972 * 3 2 1 7 7 C 1.37875 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47287 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.34740 * 117.00334 * 180.02562 * 11 10 9 13 13 O 1.21504 * 119.99859 * 0.02562 * 12 11 10 14 14 C 1.47498 * 120.00341 * 180.02562 * 12 11 10 15 15 C 1.39765 * 120.14769 * 359.97438 * 14 12 11 16 16 C 1.37975 * 119.86077 * 180.02562 * 15 14 12 17 17 F 1.35103 * 119.91815 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.15944 * 0.02562 * 16 15 14 19 19 Cl 1.73608 * 119.84802 * 179.97438 * 18 16 15 20 20 C 1.38326 * 120.30494 * 0.02562 * 18 16 15 21 21 C 1.38253 * 120.13818 * 359.97438 * 20 18 16 22 22 F 1.35100 * 120.08323 * 180.02562 * 21 20 18 23 23 H 0.97005 * 120.00047 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47104 * 59.99047 * 9 7 2 25 25 H 1.09005 * 109.46411 * 299.99654 * 9 7 2 26 26 H 1.09003 * 109.47537 * 59.99667 * 10 9 7 27 27 H 1.08996 * 109.47548 * 299.99681 * 10 9 7 28 28 H 1.08002 * 120.06870 * 0.30492 * 15 14 12 29 29 H 1.08006 * 119.93092 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2529 -6.0496 0.0018 13 8 3.4662 -5.9861 0.0023 14 6 1.5832 -7.3639 0.0018 15 6 0.1877 -7.4406 0.0018 16 6 -0.4325 -8.6731 0.0024 17 9 -1.7814 -8.7486 0.0019 18 6 0.3261 -9.8356 0.0036 19 17 -0.4627 -11.3821 0.0050 20 6 1.7077 -9.7675 0.0047 21 6 2.3421 -8.5391 0.0041 22 9 3.6915 -8.4739 0.0047 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 -0.4039 -6.5371 -0.0032 29 1 2.2920 -10.6758 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180122102.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:48 Heat of formation + Delta-G solvation = -162.991366 kcal Electronic energy + Delta-G solvation = -19655.472044 eV Core-core repulsion = 15819.654509 eV Total energy + Delta-G solvation = -3835.817534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.35455 -49.29842 -40.34798 -38.96021 -37.09947 -36.23566 -33.43650 -32.09218 -30.61916 -30.20965 -25.70934 -24.53654 -23.45511 -21.49643 -20.81130 -18.64998 -18.10734 -17.75647 -16.97351 -16.59804 -16.24890 -15.98616 -15.89601 -15.63842 -15.03140 -14.68705 -14.53731 -14.19444 -13.48057 -13.26922 -13.24953 -12.87270 -12.41514 -12.20270 -11.76901 -11.60681 -11.32963 -11.13210 -10.84678 -10.78829 -10.45707 -9.79104 -9.72875 -9.67618 -9.35028 -9.09739 -8.49618 -6.15433 -4.20036 -0.14169 0.38073 1.30401 2.15177 2.73531 3.04979 3.24918 3.32643 3.37281 3.45118 3.58934 3.95264 4.30047 4.35927 4.60758 4.83239 5.12379 5.14454 5.21590 5.34763 5.52057 5.94202 5.99048 6.02024 6.53127 6.72999 7.46948 7.54120 7.77907 7.95389 8.17098 8.85532 9.44888 10.96005 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.003185 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.535069 B = 8789.721233 C = 9713.809459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.348 6.348 12 C 0.500 3.500 13 O -0.492 6.492 14 C -0.121 4.121 15 C -0.054 4.054 16 C 0.090 3.910 17 F -0.116 7.116 18 C -0.022 4.022 19 Cl -0.029 7.029 20 C -0.134 4.134 21 C 0.167 3.833 22 F -0.101 7.101 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.177 0.823 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -22.220 0.004 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.265 6.265 12 C 0.343 3.657 13 O -0.381 6.381 14 C -0.124 4.124 15 C -0.073 4.073 16 C 0.070 3.930 17 F -0.094 7.094 18 C -0.050 4.050 19 Cl 0.001 6.999 20 C -0.153 4.153 21 C 0.146 3.854 22 F -0.079 7.079 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.194 0.806 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.669 -22.158 0.003 22.169 hybrid contribution 0.446 0.802 0.000 0.917 sum -0.223 -21.357 0.003 21.358 Atomic orbital electron populations 1.69978 1.06095 1.26971 1.49693 1.24982 0.94932 0.99442 0.94786 0.86405 0.80058 0.83061 0.77732 1.19560 1.20805 1.20808 1.20997 0.93255 0.89987 1.52308 0.92123 1.19200 0.94187 0.88900 0.99015 1.23783 0.96531 0.77919 1.01381 1.86563 1.41877 1.15510 1.82500 1.20494 0.85670 0.85125 0.74431 1.90899 1.14374 1.88070 1.44753 1.19299 0.93277 0.91319 1.08501 1.21476 0.93357 0.97863 0.94600 1.17160 0.78113 0.92243 1.05527 1.91603 1.27197 1.96884 1.93711 1.20919 0.92704 0.87410 1.03941 1.98426 1.79788 1.25332 1.96388 1.20797 0.92352 0.97973 1.04211 1.17394 0.78071 0.91936 0.97955 1.91662 1.26848 1.96896 1.92479 0.92708 0.95221 0.95210 0.91896 0.91889 0.80606 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.53 -14.47 9.11 -34.44 -0.31 -14.79 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 15 10 C 0.08 1.61 5.41 37.15 0.20 1.82 15 11 O -0.35 -6.51 9.47 -40.60 -0.38 -6.90 15 12 C 0.50 8.50 7.89 34.50 0.27 8.77 15 13 O -0.49 -9.57 15.13 -19.27 -0.29 -9.86 15 14 C -0.12 -1.58 5.88 -104.93 -0.62 -2.20 15 15 C -0.05 -0.60 9.59 -39.11 -0.37 -0.97 15 16 C 0.09 0.91 7.26 -39.47 -0.29 0.63 15 17 F -0.12 -1.23 16.82 2.25 0.04 -1.20 15 18 C -0.02 -0.20 6.33 -39.34 -0.25 -0.44 15 19 Cl -0.03 -0.23 28.60 -51.86 -1.48 -1.72 15 20 C -0.13 -1.15 9.79 -39.54 -0.39 -1.54 15 21 C 0.17 1.92 7.28 -38.96 -0.28 1.63 15 22 F -0.10 -1.35 15.54 2.25 0.04 -1.31 15 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 28 H 0.18 1.88 7.61 -52.49 -0.40 1.48 15 29 H 0.17 0.98 8.06 -52.48 -0.42 0.55 15 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -29.83 293.34 -6.29 -36.12 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: -2.05 Total: -5.47 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.28 Total: -5.04 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.74 Total: -25.08 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.68 Total: -16.76 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.07 Total: -2.51 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.48 Total: -1.72 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.83 -6.29 -36.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180122102.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.873 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds