Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00239 * 2 1 4 4 H 1.48497 * 109.47542 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47262 * 300.00390 * 3 2 1 6 6 H 1.48512 * 109.46995 * 59.99972 * 3 2 1 7 7 C 1.37875 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47287 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.34740 * 117.00334 * 180.02562 * 11 10 9 13 13 O 1.21504 * 119.99859 * 0.02562 * 12 11 10 14 14 C 1.47498 * 120.00341 * 180.02562 * 12 11 10 15 15 C 1.39765 * 120.14769 * 359.97438 * 14 12 11 16 16 C 1.37975 * 119.86077 * 180.02562 * 15 14 12 17 17 F 1.35103 * 119.91815 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.15944 * 0.02562 * 16 15 14 19 19 Cl 1.73608 * 119.84802 * 179.97438 * 18 16 15 20 20 C 1.38326 * 120.30494 * 0.02562 * 18 16 15 21 21 C 1.38253 * 120.13818 * 359.97438 * 20 18 16 22 22 F 1.35100 * 120.08323 * 180.02562 * 21 20 18 23 23 H 0.97005 * 120.00047 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47104 * 59.99047 * 9 7 2 25 25 H 1.09005 * 109.46411 * 299.99654 * 9 7 2 26 26 H 1.09003 * 109.47537 * 59.99667 * 10 9 7 27 27 H 1.08996 * 109.47548 * 299.99681 * 10 9 7 28 28 H 1.08002 * 120.06870 * 0.30492 * 15 14 12 29 29 H 1.08006 * 119.93092 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2529 -6.0496 0.0018 13 8 3.4662 -5.9861 0.0023 14 6 1.5832 -7.3639 0.0018 15 6 0.1877 -7.4406 0.0018 16 6 -0.4325 -8.6731 0.0024 17 9 -1.7814 -8.7486 0.0019 18 6 0.3261 -9.8356 0.0036 19 17 -0.4627 -11.3821 0.0050 20 6 1.7077 -9.7675 0.0047 21 6 2.3421 -8.5391 0.0041 22 9 3.6915 -8.4739 0.0047 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 -0.4039 -6.5371 -0.0032 29 1 2.2920 -10.6758 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180122102.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -178.335439 kcal Electronic energy + Delta-G solvation = -19656.137413 eV Core-core repulsion = 15819.654509 eV Total energy + Delta-G solvation = -3836.482903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.26964 -50.20183 -41.67902 -39.95555 -37.93410 -37.68814 -35.47024 -33.15000 -32.12058 -31.44553 -27.39217 -25.84257 -24.43571 -23.08282 -22.31991 -19.77275 -19.10559 -18.71678 -18.55038 -17.81455 -17.79039 -17.26305 -17.12676 -16.63558 -16.50615 -15.89372 -15.54021 -15.13658 -15.09393 -14.50114 -14.38578 -14.07526 -14.03426 -13.22956 -13.13837 -13.05126 -12.68179 -12.60167 -12.56312 -12.31707 -11.99234 -11.59939 -11.54105 -11.39621 -10.62026 -10.51379 -9.97682 -8.27534 -6.40261 -1.08475 -0.44563 0.54437 1.03548 1.36901 1.41971 1.45238 1.56845 1.98936 2.39202 2.59494 2.69626 3.07448 3.08947 3.36110 3.55254 4.00735 4.12277 4.20430 4.23272 4.28629 4.52670 4.62011 4.67940 5.12696 5.17029 5.43620 5.46164 5.72042 6.05579 6.47263 6.73450 7.29597 8.85038 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.003185 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.535069 B = 8789.721233 C = 9713.809459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.091 3.909 11 O -0.352 6.352 12 C 0.501 3.499 13 O -0.520 6.520 14 C -0.138 4.138 15 C -0.050 4.050 16 C 0.092 3.908 17 F -0.117 7.117 18 C -0.011 4.011 19 Cl -0.011 7.011 20 C -0.110 4.110 21 C 0.164 3.836 22 F -0.113 7.113 23 H 0.268 0.732 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.175 0.825 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -23.584 0.004 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.083 0.917 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.268 6.268 12 C 0.347 3.653 13 O -0.411 6.411 14 C -0.141 4.141 15 C -0.069 4.069 16 C 0.071 3.929 17 F -0.096 7.096 18 C -0.039 4.039 19 Cl 0.018 6.982 20 C -0.129 4.129 21 C 0.143 3.857 22 F -0.091 7.091 23 H 0.076 0.924 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.192 0.808 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.310 -23.549 0.004 23.551 hybrid contribution 0.244 1.059 0.000 1.087 sum -0.066 -22.490 0.004 22.490 Atomic orbital electron populations 1.70092 1.07733 1.28197 1.50416 1.25932 0.95835 1.03327 0.94122 0.85288 0.78927 0.78197 0.77966 1.18651 1.20129 1.20139 1.21398 0.93747 0.91192 1.52405 0.91663 1.19001 0.94345 0.90331 0.97014 1.23293 0.95198 0.78215 1.01483 1.86538 1.41832 1.15449 1.83015 1.21094 0.85501 0.85617 0.73135 1.90878 1.15547 1.88382 1.46304 1.19048 0.93955 0.89540 1.11545 1.21366 0.92542 0.98496 0.94457 1.17117 0.78049 0.92237 1.05456 1.91605 1.27376 1.96869 1.93722 1.20989 0.92848 0.87738 1.02331 1.98445 1.79541 1.24052 1.96132 1.21016 0.92146 0.97861 1.01860 1.17538 0.77497 0.92345 0.98282 1.91634 1.27834 1.96987 1.92649 0.92351 0.97188 0.97180 0.91764 0.91752 0.80760 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.29 21.45 0.28 -54.20 15 2 C 0.01 0.39 5.46 84.65 0.46 0.85 15 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 15 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 7 C -0.55 -30.58 9.11 25.60 0.23 -30.35 15 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 15 9 C 0.03 1.58 5.35 29.85 0.16 1.74 15 10 C 0.09 3.95 5.41 71.98 0.39 4.34 15 11 O -0.35 -13.48 9.47 -56.50 -0.54 -14.02 15 12 C 0.50 17.25 7.89 70.26 0.55 17.81 15 13 O -0.52 -20.51 15.13 19.82 0.30 -20.21 15 14 C -0.14 -3.53 5.88 -20.07 -0.12 -3.65 15 15 C -0.05 -1.06 9.59 22.58 0.22 -0.85 15 16 C 0.09 1.70 7.26 22.34 0.16 1.86 15 17 F -0.12 -2.31 16.82 44.97 0.76 -1.55 15 18 C -0.01 -0.17 6.33 22.43 0.14 -0.02 15 19 Cl -0.01 -0.15 28.60 -2.72 -0.08 -0.23 15 20 C -0.11 -1.56 9.79 22.29 0.22 -1.34 15 21 C 0.16 3.52 7.28 22.67 0.17 3.68 15 22 F -0.11 -2.90 15.54 44.97 0.70 -2.20 15 23 H 0.27 14.69 8.31 -92.70 -0.77 13.92 15 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 25 H 0.01 0.54 8.14 -2.38 -0.02 0.52 15 26 H 0.06 2.76 8.14 -2.39 -0.02 2.74 15 27 H 0.06 2.76 8.14 -2.39 -0.02 2.74 15 28 H 0.17 3.75 7.61 -2.91 -0.02 3.73 15 29 H 0.20 1.50 8.06 -2.91 -0.02 1.48 15 Total: -1.00 -64.17 293.34 7.24 -56.92 By element: Atomic # 1 Polarization: -4.91 SS G_CDS: 1.20 Total: -3.71 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 2.59 Total: -5.92 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.28 Total: -54.20 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.24 Total: -34.23 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 1.46 Total: -3.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -64.17 7.24 -56.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180122102.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.412 kcal (2) G-P(sol) polarization free energy of solvation -64.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds