Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38611 * 120.42742 * 2 1 4 4 C 1.38667 * 118.44077 * 180.22430 * 3 2 1 5 5 S 1.76195 * 120.40636 * 179.80644 * 4 3 2 6 6 O 1.42106 * 106.40127 * 156.18161 * 5 4 3 7 7 O 1.42096 * 106.40642 * 23.26057 * 5 4 3 8 8 N 1.65599 * 107.21907 * 269.71689 * 5 4 3 9 9 C 1.46498 * 120.00185 * 270.00501 * 8 5 4 10 10 C 1.36940 * 119.99631 * 90.00074 * 8 5 4 11 11 H 1.07995 * 120.00242 * 338.28592 * 10 8 5 12 12 C 1.38809 * 119.99903 * 158.01915 * 10 8 5 13 13 N 1.31623 * 120.00023 * 349.08077 * 12 10 8 14 14 Si 1.86804 * 120.00060 * 169.07561 * 12 10 8 15 15 H 1.48507 * 109.46605 * 90.00143 * 14 12 10 16 16 H 1.48498 * 109.47270 * 209.99892 * 14 12 10 17 17 H 1.48496 * 109.47268 * 330.00352 * 14 12 10 18 18 C 1.38192 * 119.18589 * 359.52525 * 4 3 2 19 19 N 1.31872 * 120.78333 * 0.25807 * 18 4 3 20 20 C 1.31977 * 121.70754 * 359.97438 * 19 18 4 21 21 Cl 1.73597 * 119.63311 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46905 * 270.23131 * 1 2 3 23 23 H 1.09005 * 109.46981 * 30.22610 * 1 2 3 24 24 H 1.09000 * 109.47435 * 150.23102 * 1 2 3 25 25 H 1.08008 * 120.78080 * 0.02984 * 3 2 1 26 26 H 1.09004 * 109.47024 * 265.25085 * 9 8 5 27 27 H 1.08997 * 109.47513 * 25.25067 * 9 8 5 28 28 H 1.09001 * 109.47092 * 145.25952 * 9 8 5 29 29 H 0.96999 * 119.99749 * 180.02562 * 13 12 10 30 30 H 1.08004 * 119.60491 * 180.27507 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1952 0.0000 4 6 3.5948 1.1471 -0.0048 5 16 4.5387 2.6349 -0.0101 6 8 5.8086 2.3064 0.5364 7 8 3.6981 3.6454 0.5297 8 7 4.8024 3.0425 -1.5934 9 6 5.9902 2.5430 -2.2903 10 6 3.9100 3.8463 -2.2512 11 1 2.8944 3.9313 -1.8937 12 6 4.3121 4.5562 -3.3742 13 7 5.5894 4.6307 -3.6831 14 14 3.0406 5.4056 -4.4472 15 1 2.8236 6.7901 -3.9556 16 1 3.5259 5.4487 -5.8499 17 1 1.7616 4.6534 -4.3887 18 6 4.2265 -0.0820 0.0007 19 7 3.5273 -1.2001 0.0052 20 6 2.2076 -1.1930 0.0052 21 17 1.3411 -2.6972 0.0119 22 1 -0.3633 0.0041 1.0276 23 1 -0.3633 0.8880 -0.5174 24 1 -0.3634 -0.8920 -0.5102 25 1 1.6888 2.1418 0.0005 26 1 6.7846 3.2873 -2.2335 27 1 6.3249 1.6180 -1.8209 28 1 5.7452 2.3523 -3.3352 29 1 5.8705 5.1271 -4.4676 30 1 5.3056 -0.1273 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180676507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = -33.486118 kcal Electronic energy + Delta-G solvation = -19083.323003 eV Core-core repulsion = 15839.254375 eV Total energy + Delta-G solvation = -3244.068628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.28743 -36.83743 -36.47061 -35.58512 -35.03339 -33.83154 -31.91914 -31.23502 -27.48827 -26.36717 -24.02285 -23.51568 -22.66240 -18.69850 -17.78953 -17.38133 -17.02617 -16.50373 -16.39944 -14.90389 -14.60455 -14.38259 -14.07768 -13.34100 -13.28396 -13.13827 -13.00129 -12.68869 -12.38910 -12.06580 -11.87198 -11.41257 -11.37208 -11.31259 -11.25530 -10.96840 -10.81095 -10.67881 -10.42119 -10.15162 -9.96557 -9.66178 -9.18931 -9.03399 -8.04075 -6.21213 -3.93687 0.49539 1.06888 1.20280 1.63391 3.19409 3.25596 3.26820 3.35169 3.98216 4.31208 4.34718 4.50978 4.57212 4.67994 4.92779 5.07884 5.19677 5.27347 5.44353 5.60300 5.81980 5.87406 5.92366 6.16909 6.36549 6.82842 7.10039 7.44054 7.51733 7.59190 8.36879 8.92536 9.29731 10.81971 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.005821 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.591549 B = 4808.913419 C = 5408.151510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.144 4.144 3 C 0.038 3.962 4 C -0.717 4.717 5 S 2.675 3.325 6 O -0.973 6.973 7 O -0.957 6.957 8 N -0.842 5.842 9 C 0.131 3.869 10 C -0.325 4.325 11 H 0.098 0.902 12 C 0.043 3.957 13 N -0.883 5.883 14 Si 0.917 3.083 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.204 3.796 19 N -0.491 5.491 20 C 0.207 3.793 21 Cl -0.030 7.030 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.161 0.839 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.265 0.735 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 -9.261 4.168 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.147 4.147 3 C 0.012 3.988 4 C -0.799 4.799 5 S 2.759 3.241 6 O -0.963 6.963 7 O -0.946 6.946 8 N -0.677 5.677 9 C -0.015 4.015 10 C -0.454 4.454 11 H 0.116 0.884 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.046 3.954 19 N -0.202 5.202 20 C 0.043 3.957 21 Cl -0.002 7.002 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.179 0.821 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.751 -9.761 4.776 12.793 hybrid contribution -1.373 0.336 -1.072 1.774 sum -8.124 -9.425 3.704 12.982 Atomic orbital electron populations 1.20833 0.88876 1.04109 1.03284 1.20649 0.98331 0.91938 1.03829 1.21293 0.91963 0.98602 0.86964 1.33148 1.08763 1.23602 1.14375 1.02522 0.73715 0.73787 0.74122 1.93511 1.39565 1.85392 1.77855 1.93497 1.69154 1.54221 1.77769 1.52833 1.30463 1.55909 1.28492 1.21217 0.87552 0.95387 0.97347 1.19110 0.92798 1.21889 1.11630 0.88411 1.25105 0.96282 0.96616 0.98207 1.70059 1.13629 1.41508 1.27048 0.86103 0.80444 0.79786 0.79246 1.20270 1.20907 1.19685 1.22443 1.00238 0.84996 0.87720 1.67077 1.06401 1.32216 1.14492 1.21743 0.90188 0.87034 0.96722 1.98387 1.73595 1.32078 1.96117 0.90278 0.90232 0.90540 0.82133 0.91559 0.95758 0.91665 0.92433 0.80352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.63 36.00 0.35 -0.83 16 2 C -0.14 -2.04 5.90 -104.44 -0.62 -2.66 16 3 C 0.04 0.61 9.33 -39.29 -0.37 0.25 16 4 C -0.72 -12.73 5.99 -39.44 -0.24 -12.97 16 5 S 2.68 55.94 5.62 -107.50 -0.60 55.34 16 6 O -0.97 -21.22 16.28 -57.17 -0.93 -22.16 16 7 O -0.96 -21.92 16.43 -57.17 -0.94 -22.86 16 8 N -0.84 -19.63 3.31 -66.69 -0.22 -19.85 16 9 C 0.13 2.91 8.58 59.85 0.51 3.43 16 10 C -0.32 -8.13 9.20 -15.06 -0.14 -8.27 16 11 H 0.10 2.34 7.64 -52.49 -0.40 1.94 16 12 C 0.04 1.09 5.14 -17.43 -0.09 1.00 16 13 N -0.88 -23.13 10.54 55.49 0.58 -22.55 16 14 Si 0.92 19.75 29.57 -169.99 -5.03 14.72 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 C 0.20 3.44 10.68 -17.55 -0.19 3.25 16 19 N -0.49 -8.19 10.34 -10.36 -0.11 -8.30 16 20 C 0.21 3.14 7.27 -17.45 -0.13 3.01 16 21 Cl -0.03 -0.38 27.46 -51.86 -1.42 -1.80 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.08 0.72 6.92 -51.93 -0.36 0.36 16 25 H 0.16 2.36 7.70 -52.48 -0.40 1.95 16 26 H 0.07 1.58 7.40 -51.93 -0.38 1.19 16 27 H 0.02 0.45 7.62 -51.93 -0.40 0.06 16 28 H 0.06 1.49 7.19 -51.93 -0.37 1.12 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.18 2.68 7.63 -52.48 -0.40 2.28 16 LS Contribution 289.24 15.07 4.36 4.36 Total: -1.00 -29.72 289.24 -7.91 -37.62 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -2.70 Total: -0.74 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.90 Total: -13.79 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.26 Total: -50.69 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.87 Total: -45.01 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Atomic # 16 Polarization: 55.94 SS G_CDS: -0.60 Total: 55.34 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.42 Total: -1.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.72 -7.91 -37.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180676507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.136 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds