Wall clock time and date at job start Tue Mar 31 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38611 * 120.42742 * 2 1 4 4 C 1.38667 * 118.44077 * 180.22430 * 3 2 1 5 5 S 1.76195 * 120.40636 * 179.80644 * 4 3 2 6 6 O 1.42106 * 106.40127 * 156.18161 * 5 4 3 7 7 O 1.42096 * 106.40642 * 23.26057 * 5 4 3 8 8 N 1.65599 * 107.21907 * 269.71689 * 5 4 3 9 9 C 1.46498 * 120.00185 * 270.00501 * 8 5 4 10 10 C 1.36940 * 119.99631 * 90.00074 * 8 5 4 11 11 H 1.07995 * 120.00242 * 338.28592 * 10 8 5 12 12 C 1.38809 * 119.99903 * 158.01915 * 10 8 5 13 13 N 1.31623 * 120.00023 * 349.08077 * 12 10 8 14 14 Si 1.86804 * 120.00060 * 169.07561 * 12 10 8 15 15 H 1.48507 * 109.46605 * 90.00143 * 14 12 10 16 16 H 1.48498 * 109.47270 * 209.99892 * 14 12 10 17 17 H 1.48496 * 109.47268 * 330.00352 * 14 12 10 18 18 C 1.38192 * 119.18589 * 359.52525 * 4 3 2 19 19 N 1.31872 * 120.78333 * 0.25807 * 18 4 3 20 20 C 1.31977 * 121.70754 * 359.97438 * 19 18 4 21 21 Cl 1.73597 * 119.63311 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46905 * 270.23131 * 1 2 3 23 23 H 1.09005 * 109.46981 * 30.22610 * 1 2 3 24 24 H 1.09000 * 109.47435 * 150.23102 * 1 2 3 25 25 H 1.08008 * 120.78080 * 0.02984 * 3 2 1 26 26 H 1.09004 * 109.47024 * 265.25085 * 9 8 5 27 27 H 1.08997 * 109.47513 * 25.25067 * 9 8 5 28 28 H 1.09001 * 109.47092 * 145.25952 * 9 8 5 29 29 H 0.96999 * 119.99749 * 180.02562 * 13 12 10 30 30 H 1.08004 * 119.60491 * 180.27507 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1952 0.0000 4 6 3.5948 1.1471 -0.0048 5 16 4.5387 2.6349 -0.0101 6 8 5.8086 2.3064 0.5364 7 8 3.6981 3.6454 0.5297 8 7 4.8024 3.0425 -1.5934 9 6 5.9902 2.5430 -2.2903 10 6 3.9100 3.8463 -2.2512 11 1 2.8944 3.9313 -1.8937 12 6 4.3121 4.5562 -3.3742 13 7 5.5894 4.6307 -3.6831 14 14 3.0406 5.4056 -4.4472 15 1 2.8236 6.7901 -3.9556 16 1 3.5259 5.4487 -5.8499 17 1 1.7616 4.6534 -4.3887 18 6 4.2265 -0.0820 0.0007 19 7 3.5273 -1.2001 0.0052 20 6 2.2076 -1.1930 0.0052 21 17 1.3411 -2.6972 0.0119 22 1 -0.3633 0.0041 1.0276 23 1 -0.3633 0.8880 -0.5174 24 1 -0.3634 -0.8920 -0.5102 25 1 1.6888 2.1418 0.0005 26 1 6.7846 3.2873 -2.2335 27 1 6.3249 1.6180 -1.8209 28 1 5.7452 2.3523 -3.3352 29 1 5.8705 5.1271 -4.4676 30 1 5.3056 -0.1273 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180676507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:39 Heat of formation + Delta-G solvation = -53.791774 kcal Electronic energy + Delta-G solvation = -19084.203522 eV Core-core repulsion = 15839.254375 eV Total energy + Delta-G solvation = -3244.949147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.52414 -38.21043 -37.93206 -37.37219 -36.78389 -34.96585 -33.23254 -33.07404 -28.53674 -28.17762 -25.46482 -25.19206 -23.88587 -20.40834 -19.33442 -18.79308 -18.35598 -18.22237 -17.94222 -16.40176 -16.17115 -15.99175 -15.19177 -15.06698 -14.66964 -14.49597 -14.18541 -13.88563 -13.76055 -13.38735 -13.14048 -13.07070 -13.06922 -13.04623 -12.69076 -12.55667 -12.42438 -12.20887 -12.09149 -11.87753 -11.27494 -11.06428 -10.87485 -10.21210 -9.88945 -8.08502 -5.86698 -0.81795 -0.42472 -0.15339 0.48463 1.50181 1.51339 1.60736 2.02806 2.34475 2.60451 2.85369 3.15819 3.18526 3.24407 3.53112 3.68032 3.89301 4.16444 4.29121 4.46360 4.60415 4.71569 4.89365 4.96405 5.04609 5.25786 5.28467 5.55961 5.77448 6.26319 6.50815 7.08157 7.40976 8.94235 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.005821 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.591549 B = 4808.913419 C = 5408.151510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.134 4.134 3 C 0.029 3.971 4 C -0.721 4.721 5 S 2.695 3.305 6 O -0.991 6.991 7 O -0.983 6.983 8 N -0.867 5.867 9 C 0.141 3.859 10 C -0.335 4.335 11 H 0.104 0.896 12 C -0.008 4.008 13 N -0.915 5.915 14 Si 0.976 3.024 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.258 1.258 18 C 0.199 3.801 19 N -0.502 5.502 20 C 0.199 3.801 21 Cl -0.002 7.002 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.172 0.828 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.264 0.736 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 -10.640 4.364 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.138 4.138 3 C 0.002 3.998 4 C -0.808 4.808 5 S 2.785 3.215 6 O -0.981 6.981 7 O -0.973 6.973 8 N -0.702 5.702 9 C -0.005 4.005 10 C -0.465 4.465 11 H 0.121 0.879 12 C -0.210 4.210 13 N -0.556 5.556 14 Si 0.800 3.200 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.182 1.182 18 C 0.040 3.960 19 N -0.214 5.214 20 C 0.035 3.965 21 Cl 0.027 6.973 22 H 0.118 0.882 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.189 0.811 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.961 -11.105 4.980 15.114 hybrid contribution -0.774 0.589 -0.976 1.379 sum -9.735 -10.516 4.003 14.879 Atomic orbital electron populations 1.21000 0.85847 1.05402 1.04974 1.21010 1.00343 0.90705 1.01751 1.21558 0.91348 1.00063 0.86806 1.32343 1.09284 1.21574 1.17615 1.01521 0.73145 0.73757 0.73068 1.93478 1.40792 1.85733 1.78106 1.93455 1.69778 1.56017 1.78099 1.52768 1.31251 1.58396 1.27761 1.21036 0.86669 0.95789 0.97033 1.19425 0.92905 1.22839 1.11288 0.87874 1.25953 0.97980 0.97299 0.99724 1.70197 1.15170 1.42581 1.27608 0.85198 0.78799 0.78600 0.77369 1.20484 1.20926 1.18187 1.22629 1.00975 0.84777 0.87602 1.67152 1.07355 1.31846 1.14999 1.22167 0.90030 0.88634 0.95649 1.98399 1.72761 1.30332 1.95824 0.88209 0.88901 0.89349 0.81089 0.94164 0.92758 0.92765 0.92687 0.79270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 9.63 71.23 0.69 -1.26 16 2 C -0.13 -3.43 5.90 -19.75 -0.12 -3.55 16 3 C 0.03 0.87 9.33 22.46 0.21 1.08 16 4 C -0.72 -24.83 5.99 22.36 0.13 -24.69 16 5 S 2.70 112.81 5.62 -56.49 -0.32 112.49 16 6 O -0.99 -43.38 16.28 -128.00 -2.08 -45.46 16 7 O -0.98 -45.18 16.43 -128.00 -2.10 -47.28 16 8 N -0.87 -40.86 3.31 -364.90 -1.21 -42.07 16 9 C 0.14 6.39 8.58 127.77 1.10 7.49 16 10 C -0.33 -16.86 9.20 84.03 0.77 -16.09 16 11 H 0.10 4.91 7.64 -2.91 -0.02 4.89 16 12 C -0.01 -0.41 5.14 84.86 0.44 0.02 16 13 N -0.91 -49.01 10.54 21.65 0.23 -48.78 16 14 Si 0.98 40.37 29.57 68.60 2.03 42.40 16 15 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 18 C 0.20 6.44 10.68 84.68 0.90 7.35 16 19 N -0.50 -15.79 10.34 -186.70 -1.93 -17.72 16 20 C 0.20 5.50 7.27 84.70 0.62 6.12 16 21 Cl 0.00 -0.04 27.46 -2.72 -0.07 -0.12 16 22 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.09 1.37 8.10 -2.38 -0.02 1.35 16 24 H 0.09 1.31 6.92 -2.39 -0.02 1.29 16 25 H 0.17 4.71 7.70 -2.91 -0.02 4.69 16 26 H 0.04 1.98 7.40 -2.39 -0.02 1.96 16 27 H 0.05 2.05 7.62 -2.39 -0.02 2.03 16 28 H 0.05 2.54 7.19 -2.39 -0.02 2.52 16 29 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 30 H 0.19 5.51 7.63 -2.91 -0.02 5.49 16 Total: -1.00 -63.26 289.24 0.45 -62.80 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.18 Total: 7.28 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 4.74 Total: -23.55 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -2.91 Total: -108.56 kcal Atomic # 8 Polarization: -88.56 SS G_CDS: -4.19 Total: -92.74 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 112.81 SS G_CDS: -0.32 Total: 112.49 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.07 Total: -0.12 kcal Total: -63.26 0.45 -62.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180676507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.010 kcal (2) G-P(sol) polarization free energy of solvation -63.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds