Wall clock time and date at job start Tue Mar 31 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.99602 * 2 1 4 4 C 1.38215 * 119.99882 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.99671 * 0.12887 * 4 3 2 6 6 C 1.38211 * 120.00117 * 359.95869 * 5 4 3 7 7 C 1.50703 * 119.99809 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47073 * 199.98022 * 7 6 5 9 9 N 1.46907 * 109.46965 * 319.97586 * 7 6 5 10 10 C 1.46894 * 110.99978 * 229.55571 * 9 7 6 11 11 C 1.53002 * 109.47328 * 175.12549 * 10 9 7 12 12 C 1.52999 * 109.47297 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46843 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00405 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99874 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00123 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99842 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46668 * 90.00441 * 17 15 13 19 19 H 1.48494 * 109.46992 * 209.99985 * 17 15 13 20 20 H 1.48498 * 109.47335 * 330.00294 * 17 15 13 21 21 C 1.52999 * 109.47182 * 79.97727 * 7 6 5 22 22 C 1.52996 * 109.47301 * 60.99494 * 21 7 6 23 23 C 1.53003 * 109.47074 * 180.99634 * 21 7 6 24 24 C 1.53004 * 109.47172 * 300.99162 * 21 7 6 25 25 C 1.38211 * 120.00234 * 180.08282 * 2 1 3 26 26 H 1.08997 * 109.47654 * 269.91389 * 1 2 3 27 27 H 1.08997 * 109.47245 * 29.91953 * 1 2 3 28 28 H 1.09000 * 109.46691 * 149.91546 * 1 2 3 29 29 H 1.07994 * 120.00345 * 0.06097 * 3 2 1 30 30 H 1.07995 * 120.00129 * 180.11140 * 4 3 2 31 31 H 1.08004 * 119.99423 * 179.97438 * 5 4 3 32 32 H 1.00904 * 110.99985 * 105.59777 * 9 7 6 33 33 H 1.09005 * 109.46702 * 295.12279 * 10 9 7 34 34 H 1.08999 * 109.47389 * 55.12271 * 10 9 7 35 35 H 1.08998 * 109.46754 * 299.99825 * 11 10 9 36 36 H 1.08999 * 109.47112 * 59.99553 * 11 10 9 37 37 H 1.08998 * 109.47213 * 299.99712 * 12 11 10 38 38 H 1.08999 * 109.47268 * 59.99816 * 12 11 10 39 39 H 0.96999 * 120.00119 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47031 * 59.99602 * 22 21 7 41 41 H 1.08998 * 109.47305 * 179.97438 * 22 21 7 42 42 H 1.09000 * 109.46706 * 300.00154 * 22 21 7 43 43 H 1.09006 * 109.47126 * 61.40490 * 23 21 7 44 44 H 1.08994 * 109.47102 * 181.41025 * 23 21 7 45 45 H 1.08999 * 109.46817 * 301.41340 * 23 21 7 46 46 H 1.09006 * 109.46539 * 59.99946 * 24 21 7 47 47 H 1.08998 * 109.47035 * 180.02562 * 24 21 7 48 48 H 1.08993 * 109.47304 * 300.00442 * 24 21 7 49 49 H 1.07994 * 119.99852 * 0.28272 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5806 -1.1969 -0.0035 7 6 4.3342 -2.5019 -0.0052 8 1 3.6795 -3.2990 -0.3576 9 7 5.4977 -2.3943 -0.8956 10 6 5.5562 -3.5304 -1.8250 11 6 6.7063 -3.3228 -2.8126 12 6 6.7676 -4.5064 -3.7801 13 6 7.8999 -4.3016 -4.7532 14 1 8.5147 -3.4159 -4.6878 15 6 8.1512 -5.2448 -5.7270 16 7 9.1391 -5.0658 -6.5765 17 14 7.0884 -6.7769 -5.8397 18 1 5.9371 -6.5154 -6.7404 19 1 7.8951 -7.9001 -6.3807 20 1 6.5883 -7.1330 -4.4876 21 6 4.8064 -2.8201 1.4149 22 6 3.5934 -2.9567 2.3372 23 6 5.5928 -4.1326 1.4088 24 6 5.7055 -1.6893 1.9187 25 6 2.1981 -1.1969 -0.0017 26 1 -0.3634 -0.0015 1.0276 27 1 -0.3633 0.8907 -0.5126 28 1 -0.3633 -0.8892 -0.5152 29 1 1.6582 2.1327 0.0010 30 1 4.1203 2.1328 0.0024 31 1 5.3517 0.0002 -0.0016 32 1 6.3527 -2.3163 -0.3656 33 1 5.7206 -4.4505 -1.2641 34 1 4.6160 -3.6014 -2.3718 35 1 6.5419 -2.4028 -3.3734 36 1 7.6465 -3.2519 -2.2657 37 1 6.9322 -5.4263 -3.2190 38 1 5.8275 -4.5778 -4.3270 39 1 9.3161 -5.7295 -7.2614 40 1 2.9529 -3.7623 1.9781 41 1 3.9298 -3.1838 3.3487 42 1 3.0332 -2.0216 2.3414 43 1 6.4707 -4.0272 0.7713 44 1 5.9078 -4.3721 2.4243 45 1 4.9601 -4.9334 1.0261 46 1 5.1453 -0.7543 1.9230 47 1 6.0423 -1.9162 2.9303 48 1 6.5697 -1.5920 1.2617 49 1 1.6581 -2.1322 -0.0077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180795309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:44 Heat of formation + Delta-G solvation = -21.372892 kcal Electronic energy + Delta-G solvation = -23443.318054 eV Core-core repulsion = 20368.212963 eV Total energy + Delta-G solvation = -3075.105091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14143 -38.92038 -36.60955 -34.85152 -33.65806 -32.90779 -31.97305 -28.87123 -28.40217 -27.98708 -27.31636 -25.92237 -23.66717 -22.91033 -21.88159 -21.53793 -19.54815 -18.90036 -17.45621 -17.01975 -16.59992 -16.24297 -15.97296 -15.72938 -15.42124 -14.97117 -14.78544 -14.57805 -14.37108 -14.26902 -13.97400 -13.75912 -13.62135 -13.24828 -13.02314 -12.97058 -12.90068 -12.70241 -12.68330 -12.56326 -12.48778 -12.25036 -11.89076 -11.79066 -11.72503 -11.60945 -11.53798 -11.39117 -11.37236 -11.15208 -10.76603 -9.57862 -9.29140 -9.26595 -8.29538 -6.33728 0.58019 0.61014 1.35427 1.37227 1.49452 2.36139 2.91665 3.05677 3.24174 3.77812 3.81203 3.92623 4.08995 4.13536 4.20975 4.25059 4.34744 4.41197 4.51404 4.55696 4.59304 4.68571 4.71158 4.77138 4.79109 4.86998 4.89693 4.90715 4.92794 4.96786 5.02892 5.05077 5.06513 5.11696 5.15786 5.24925 5.31674 5.38618 5.43986 5.45514 5.52678 5.61967 5.66621 5.71569 5.77635 5.82028 6.19147 6.26330 6.30895 6.52140 6.74627 7.30775 8.87615 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.003479 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.027428 B = 8046.217701 C = 8584.091436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.136 4.136 4 C -0.132 4.132 5 C -0.108 4.108 6 C -0.061 4.061 7 C 0.135 3.865 8 H 0.069 0.931 9 N -0.685 5.685 10 C 0.072 3.928 11 C -0.088 4.088 12 C -0.009 4.009 13 C -0.533 4.533 14 H 0.028 0.972 15 C 0.001 3.999 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.245 1.245 21 C -0.078 4.078 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.130 4.130 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.345 0.655 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.021 0.979 38 H 0.016 0.984 39 H 0.266 0.734 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.614 7.998 21.875 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.154 4.154 4 C -0.150 4.150 5 C -0.127 4.127 6 C -0.062 4.062 7 C 0.025 3.975 8 H 0.088 0.912 9 N -0.318 5.318 10 C -0.057 4.057 11 C -0.126 4.126 12 C -0.047 4.047 13 C -0.571 4.571 14 H 0.047 0.953 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.168 1.168 21 C -0.079 4.079 22 C -0.192 4.192 23 C -0.203 4.203 24 C -0.203 4.203 25 C -0.148 4.148 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.828 8.330 21.282 28.986 hybrid contribution 0.629 -1.200 -0.224 1.373 sum -17.200 7.130 21.059 28.109 Atomic orbital electron populations 1.20794 0.89837 1.03195 1.02894 1.20137 0.97142 0.92940 0.99689 1.21231 0.94312 0.98095 1.01723 1.21379 0.94784 0.98389 1.00434 1.21047 1.00193 0.91979 0.99448 1.19810 0.93227 0.94851 0.98297 1.20513 0.91737 0.93876 0.91347 0.91249 1.60490 1.06053 1.43887 1.21336 1.21959 0.98494 0.91522 0.93708 1.21233 0.97122 0.98075 0.96201 1.19477 0.95058 0.95674 0.94469 1.21522 1.15040 1.06209 1.14339 0.95321 1.26076 0.96551 1.02127 0.94776 1.70079 1.32359 1.37489 1.19503 0.85603 0.78675 0.78169 0.79859 1.19210 1.20876 1.16822 1.20960 0.96694 0.95810 0.94418 1.21805 0.96599 1.01834 0.98932 1.21951 0.99618 0.96280 1.02453 1.22019 0.99032 0.98210 1.01020 1.21022 0.93476 0.98086 1.02254 0.90325 0.90896 0.91422 0.84840 0.85108 0.86193 0.83410 0.94542 0.91850 0.93688 0.93522 0.96099 0.96544 0.92501 0.92536 0.91821 0.92577 0.93449 0.91162 0.92786 0.91827 0.91786 0.92810 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.10 -1.91 5.88 -19.87 -0.12 -2.03 16 3 C -0.14 -2.61 9.70 22.27 0.22 -2.39 16 4 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 5 C -0.11 -2.50 7.07 22.27 0.16 -2.34 16 6 C -0.06 -1.39 3.82 -19.87 -0.08 -1.47 16 7 C 0.14 3.04 1.76 44.17 0.08 3.12 16 8 H 0.07 1.63 7.37 -2.39 -0.02 1.61 16 9 N -0.69 -18.34 5.23 -495.43 -2.59 -20.93 16 10 C 0.07 2.26 5.10 86.31 0.44 2.70 16 11 C -0.09 -3.55 5.45 30.59 0.17 -3.38 16 12 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 13 C -0.53 -31.78 9.66 25.60 0.25 -31.53 16 14 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 15 C 0.00 0.06 5.47 84.66 0.46 0.52 16 16 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 17 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 21 C -0.08 -1.43 0.54 -52.18 -0.03 -1.46 16 22 C -0.13 -2.16 8.09 71.98 0.58 -1.58 16 23 C -0.15 -2.74 7.52 71.98 0.54 -2.20 16 24 C -0.15 -2.59 7.17 71.98 0.52 -2.07 16 25 C -0.13 -2.75 8.36 22.27 0.19 -2.56 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 28 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 29 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.12 2.80 6.90 -2.91 -0.02 2.78 16 32 H 0.34 8.74 5.42 -89.69 -0.49 8.25 16 33 H 0.04 1.08 7.01 -2.38 -0.02 1.06 16 34 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 38 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 39 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.96 6.65 -2.39 -0.02 0.95 16 43 H 0.05 1.00 6.39 -2.38 -0.02 0.99 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.18 5.61 -2.38 -0.01 1.17 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 1.01 6.40 -2.39 -0.02 0.99 16 49 H 0.12 2.30 8.04 -2.91 -0.02 2.28 16 Total: -1.00 -67.25 373.43 4.38 -62.87 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.35 Total: 22.35 kcal Atomic # 6 Polarization: -54.71 SS G_CDS: 4.43 Total: -50.28 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.29 Total: -81.89 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -67.25 4.38 -62.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180795309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.501 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds