Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47290 * 2 1 4 4 C 1.53001 * 109.47261 * 239.99780 * 2 1 3 5 5 C 1.53005 * 109.47393 * 173.52936 * 4 2 1 6 6 C 1.53002 * 109.46754 * 305.59165 * 5 4 2 7 7 C 1.53001 * 109.46879 * 65.58842 * 5 4 2 8 8 C 1.50690 * 109.47042 * 185.58861 * 5 4 2 9 9 C 1.38230 * 120.00487 * 359.72634 * 8 5 4 10 10 C 1.38234 * 120.00340 * 179.76754 * 9 8 5 11 11 C 1.38236 * 119.99839 * 0.50004 * 10 9 8 12 12 C 1.38232 * 119.99773 * 359.75504 * 11 10 9 13 13 C 1.38234 * 120.00498 * 359.97438 * 12 11 10 14 14 N 1.46903 * 109.46789 * 120.00419 * 2 1 3 15 15 C 1.46902 * 110.99579 * 274.99738 * 14 2 1 16 16 C 1.53000 * 109.47229 * 180.02562 * 15 14 2 17 17 C 1.53003 * 109.47236 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46807 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00210 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99592 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00251 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99912 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47244 * 89.99791 * 22 20 18 24 24 H 1.48501 * 109.47110 * 209.99386 * 22 20 18 25 25 H 1.48494 * 109.47249 * 329.99749 * 22 20 18 26 26 H 1.08998 * 109.47426 * 300.00060 * 1 2 3 27 27 H 1.09006 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46948 * 60.00220 * 1 2 3 29 29 H 1.09005 * 109.46950 * 293.52760 * 4 2 1 30 30 H 1.08999 * 109.47277 * 53.52820 * 4 2 1 31 31 H 1.08996 * 109.46943 * 59.99717 * 6 5 4 32 32 H 1.08997 * 109.46883 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.46706 * 300.00053 * 6 5 4 34 34 H 1.08993 * 109.47199 * 51.75721 * 7 5 4 35 35 H 1.08999 * 109.46539 * 171.76288 * 7 5 4 36 36 H 1.09000 * 109.46829 * 291.75555 * 7 5 4 37 37 H 1.08004 * 119.99769 * 359.97438 * 9 8 5 38 38 H 1.08000 * 120.00395 * 180.23136 * 10 9 8 39 39 H 1.07999 * 120.00060 * 179.72277 * 11 10 9 40 40 H 1.08005 * 119.99977 * 179.97438 * 12 11 10 41 41 H 1.07998 * 120.00220 * 179.97438 * 13 12 11 42 42 H 1.00893 * 111.00628 * 38.94916 * 14 2 1 43 43 H 1.09007 * 109.47218 * 299.99993 * 15 14 2 44 44 H 1.09000 * 109.46995 * 60.00203 * 15 14 2 45 45 H 1.08996 * 109.47354 * 300.00388 * 16 15 14 46 46 H 1.09000 * 109.47035 * 60.00142 * 16 15 14 47 47 H 1.08995 * 109.46950 * 299.99910 * 17 16 15 48 48 H 1.09000 * 109.46852 * 60.00202 * 17 16 15 49 49 H 0.97002 * 120.00222 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5614 -0.5821 -1.3332 6 6 3.9421 0.8985 -1.2714 7 6 4.2068 -1.3240 -0.1611 8 6 4.0489 -1.1724 -2.6311 9 6 3.1476 -1.7297 -3.5187 10 6 3.5944 -2.2669 -4.7115 11 6 4.9436 -2.2562 -5.0120 12 6 5.8455 -1.7037 -4.1219 13 6 5.3982 -1.1614 -2.9317 14 7 2.0195 -0.6926 1.1994 15 6 2.0823 0.2225 2.3469 16 6 2.5960 -0.5329 3.5742 17 6 2.6620 0.4203 4.7692 18 6 3.1686 -0.3237 5.9778 19 1 3.4188 -1.3715 5.9013 20 6 3.3125 0.3333 7.1814 21 7 3.0082 1.6094 7.2745 22 14 3.9411 -0.5887 8.6795 23 1 5.4221 -0.4936 8.7339 24 1 3.3612 0.0100 9.9085 25 1 3.5399 -2.0154 8.5870 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.7743 -1.7770 -1.1931 30 1 1.5852 -0.2788 -2.1354 31 1 3.5894 1.3255 -0.3326 32 1 5.0259 0.9978 -1.3317 33 1 3.4822 1.4271 -2.1064 34 1 3.8210 -2.3425 -0.1190 35 1 5.2878 -1.3502 -0.2987 36 1 3.9715 -0.8076 0.7696 37 1 2.0940 -1.7423 -3.2818 38 1 2.8898 -2.6989 -5.4067 39 1 5.2932 -2.6800 -5.9418 40 1 6.8998 -1.6957 -4.3565 41 1 6.1029 -0.7302 -2.2362 42 1 1.4495 -1.4980 1.4101 43 1 2.7588 1.0461 2.1182 44 1 1.0869 0.6162 2.5525 45 1 1.9200 -1.3568 3.8030 46 1 3.5915 -0.9263 3.3684 47 1 3.3383 1.2438 4.5401 48 1 1.6667 0.8141 4.9752 49 1 3.1092 2.0715 8.1214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181683406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = -3.241925 kcal Electronic energy + Delta-G solvation = -23114.596574 eV Core-core repulsion = 20040.277701 eV Total energy + Delta-G solvation = -3074.318873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08994 -37.99647 -35.47513 -33.71795 -32.02220 -31.10074 -29.78548 -29.43990 -27.10078 -26.60188 -25.79304 -23.27563 -22.53292 -22.19978 -20.88088 -20.04281 -18.76741 -17.06428 -16.33819 -15.59480 -15.21958 -15.09302 -14.86077 -14.42523 -14.32885 -14.05298 -13.71810 -13.48032 -13.34939 -12.87783 -12.68486 -12.61928 -12.18142 -12.16478 -11.97768 -11.64324 -11.55451 -11.42097 -11.31389 -11.19153 -10.86403 -10.75310 -10.71047 -10.54934 -10.48053 -10.33948 -10.22962 -9.66787 -9.29738 -9.02639 -8.99543 -8.72148 -8.32439 -7.89780 -5.97752 -3.99640 1.31327 1.32098 3.33538 3.39609 3.43196 3.72486 4.39225 4.50719 4.54677 4.69481 4.88130 4.94935 5.02829 5.12409 5.21640 5.28042 5.36024 5.38169 5.40407 5.48607 5.50858 5.65395 5.74685 5.80694 5.87023 5.90874 5.93256 5.95699 5.96043 6.09350 6.15863 6.17208 6.23701 6.32247 6.36781 6.38081 6.43102 6.52687 6.67312 6.75439 6.81639 6.92355 7.03407 7.16865 7.40380 7.68976 7.71337 7.86403 8.03055 8.46432 9.07821 9.64345 11.13679 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.002827 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.893493 B = 9903.474688 C =10557.795776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 H 0.082 0.918 4 C -0.097 4.097 5 C -0.015 4.015 6 C -0.139 4.139 7 C -0.136 4.136 8 C -0.060 4.060 9 C -0.125 4.125 10 C -0.121 4.121 11 C -0.134 4.134 12 C -0.120 4.120 13 C -0.116 4.116 14 N -0.676 5.676 15 C 0.057 3.943 16 C -0.106 4.106 17 C 0.022 3.978 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.336 0.664 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -4.826 -24.390 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.034 4.034 3 H 0.100 0.900 4 C -0.135 4.135 5 C -0.015 4.015 6 C -0.196 4.196 7 C -0.193 4.193 8 C -0.060 4.060 9 C -0.143 4.143 10 C -0.139 4.139 11 C -0.152 4.152 12 C -0.138 4.138 13 C -0.134 4.134 14 N -0.306 5.306 15 C -0.072 4.072 16 C -0.144 4.144 17 C -0.015 4.015 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.154 0.846 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.228 -4.594 -24.421 24.850 hybrid contribution -0.630 -0.368 0.985 1.225 sum -0.402 -4.962 -23.436 23.959 Atomic orbital electron populations 1.22505 0.97754 1.01872 1.02003 1.21704 0.92002 0.98613 0.91058 0.90018 1.21735 0.94508 1.00693 0.96516 1.19404 0.95042 0.95243 0.91861 1.21951 1.01151 0.94699 1.01834 1.22131 0.97515 1.00346 0.99309 1.20091 0.93283 0.96889 0.95750 1.21212 0.99912 0.99110 0.94086 1.21127 0.95704 0.99986 0.97116 1.21080 0.93577 1.00898 0.99608 1.21123 0.99414 0.98783 0.94525 1.21042 0.95473 0.99986 0.96904 1.60963 1.55767 1.09910 1.03956 1.22157 0.99038 0.95515 0.90461 1.21616 1.00010 0.98868 0.93939 1.19057 0.96919 0.94333 0.91218 1.21262 1.43360 0.96415 0.94580 0.92704 1.25027 0.95663 0.94882 0.98956 1.69965 1.48975 1.09011 1.25697 0.86611 0.79038 0.80008 0.82449 1.20661 1.21287 1.19898 0.92503 0.92662 0.92557 0.91731 0.92062 0.91464 0.92833 0.93320 0.93463 0.94835 0.87649 0.85799 0.86522 0.86609 0.86440 0.86134 0.84620 0.91630 0.95841 0.93756 0.92596 0.96658 0.96925 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.16 37.15 0.34 -1.54 16 2 C 0.08 0.85 2.25 -67.71 -0.15 0.70 16 3 H 0.08 0.97 5.62 -51.93 -0.29 0.68 16 4 C -0.10 -0.98 2.76 -26.73 -0.07 -1.05 16 5 C -0.02 -0.17 0.63 -155.66 -0.10 -0.27 16 6 C -0.14 -1.51 7.78 37.16 0.29 -1.22 16 7 C -0.14 -1.70 7.43 37.16 0.28 -1.43 16 8 C -0.06 -0.66 4.76 -104.63 -0.50 -1.16 16 9 C -0.13 -1.28 8.98 -39.59 -0.36 -1.63 16 10 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 11 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 12 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 13 C -0.12 -1.24 8.62 -39.58 -0.34 -1.58 16 14 N -0.68 -8.79 2.97 -106.72 -0.32 -9.11 16 15 C 0.06 0.92 5.29 -3.82 -0.02 0.90 16 16 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 22 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 27 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.67 7.81 -51.93 -0.41 0.26 16 30 H 0.06 0.57 7.16 -51.93 -0.37 0.20 16 31 H 0.07 0.78 6.20 -51.93 -0.32 0.46 16 32 H 0.05 0.57 7.39 -51.93 -0.38 0.19 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.03 0.41 7.13 -51.93 -0.37 0.04 16 36 H 0.11 1.49 5.60 -51.93 -0.29 1.20 16 37 H 0.12 1.11 5.89 -52.48 -0.31 0.81 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.12 1.22 7.07 -52.49 -0.37 0.85 16 42 H 0.34 4.27 8.47 -39.30 -0.33 3.94 16 43 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 44 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -29.66 376.48 -10.28 -39.94 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.83 Total: 1.53 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -2.52 Total: -28.43 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.42 Total: -35.53 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.66 -10.28 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181683406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.700 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds