Wall clock time and date at job start Tue Mar 31 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47290 * 2 1 4 4 C 1.53001 * 109.47261 * 239.99780 * 2 1 3 5 5 C 1.53005 * 109.47393 * 173.52936 * 4 2 1 6 6 C 1.53002 * 109.46754 * 305.59165 * 5 4 2 7 7 C 1.53001 * 109.46879 * 65.58842 * 5 4 2 8 8 C 1.50690 * 109.47042 * 185.58861 * 5 4 2 9 9 C 1.38230 * 120.00487 * 359.72634 * 8 5 4 10 10 C 1.38234 * 120.00340 * 179.76754 * 9 8 5 11 11 C 1.38236 * 119.99839 * 0.50004 * 10 9 8 12 12 C 1.38232 * 119.99773 * 359.75504 * 11 10 9 13 13 C 1.38234 * 120.00498 * 359.97438 * 12 11 10 14 14 N 1.46903 * 109.46789 * 120.00419 * 2 1 3 15 15 C 1.46902 * 110.99579 * 274.99738 * 14 2 1 16 16 C 1.53000 * 109.47229 * 180.02562 * 15 14 2 17 17 C 1.53003 * 109.47236 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46807 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00210 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99592 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00251 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99912 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47244 * 89.99791 * 22 20 18 24 24 H 1.48501 * 109.47110 * 209.99386 * 22 20 18 25 25 H 1.48494 * 109.47249 * 329.99749 * 22 20 18 26 26 H 1.08998 * 109.47426 * 300.00060 * 1 2 3 27 27 H 1.09006 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46948 * 60.00220 * 1 2 3 29 29 H 1.09005 * 109.46950 * 293.52760 * 4 2 1 30 30 H 1.08999 * 109.47277 * 53.52820 * 4 2 1 31 31 H 1.08996 * 109.46943 * 59.99717 * 6 5 4 32 32 H 1.08997 * 109.46883 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.46706 * 300.00053 * 6 5 4 34 34 H 1.08993 * 109.47199 * 51.75721 * 7 5 4 35 35 H 1.08999 * 109.46539 * 171.76288 * 7 5 4 36 36 H 1.09000 * 109.46829 * 291.75555 * 7 5 4 37 37 H 1.08004 * 119.99769 * 359.97438 * 9 8 5 38 38 H 1.08000 * 120.00395 * 180.23136 * 10 9 8 39 39 H 1.07999 * 120.00060 * 179.72277 * 11 10 9 40 40 H 1.08005 * 119.99977 * 179.97438 * 12 11 10 41 41 H 1.07998 * 120.00220 * 179.97438 * 13 12 11 42 42 H 1.00893 * 111.00628 * 38.94916 * 14 2 1 43 43 H 1.09007 * 109.47218 * 299.99993 * 15 14 2 44 44 H 1.09000 * 109.46995 * 60.00203 * 15 14 2 45 45 H 1.08996 * 109.47354 * 300.00388 * 16 15 14 46 46 H 1.09000 * 109.47035 * 60.00142 * 16 15 14 47 47 H 1.08995 * 109.46950 * 299.99910 * 17 16 15 48 48 H 1.09000 * 109.46852 * 60.00202 * 17 16 15 49 49 H 0.97002 * 120.00222 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5614 -0.5821 -1.3332 6 6 3.9421 0.8985 -1.2714 7 6 4.2068 -1.3240 -0.1611 8 6 4.0489 -1.1724 -2.6311 9 6 3.1476 -1.7297 -3.5187 10 6 3.5944 -2.2669 -4.7115 11 6 4.9436 -2.2562 -5.0120 12 6 5.8455 -1.7037 -4.1219 13 6 5.3982 -1.1614 -2.9317 14 7 2.0195 -0.6926 1.1994 15 6 2.0823 0.2225 2.3469 16 6 2.5960 -0.5329 3.5742 17 6 2.6620 0.4203 4.7692 18 6 3.1686 -0.3237 5.9778 19 1 3.4188 -1.3715 5.9013 20 6 3.3125 0.3333 7.1814 21 7 3.0082 1.6094 7.2745 22 14 3.9411 -0.5887 8.6795 23 1 5.4221 -0.4936 8.7339 24 1 3.3612 0.0100 9.9085 25 1 3.5399 -2.0154 8.5870 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.7743 -1.7770 -1.1931 30 1 1.5852 -0.2788 -2.1354 31 1 3.5894 1.3255 -0.3326 32 1 5.0259 0.9978 -1.3317 33 1 3.4822 1.4271 -2.1064 34 1 3.8210 -2.3425 -0.1190 35 1 5.2878 -1.3502 -0.2987 36 1 3.9715 -0.8076 0.7696 37 1 2.0940 -1.7423 -3.2818 38 1 2.8898 -2.6989 -5.4067 39 1 5.2932 -2.6800 -5.9418 40 1 6.8998 -1.6957 -4.3565 41 1 6.1029 -0.7302 -2.2362 42 1 1.4495 -1.4980 1.4101 43 1 2.7588 1.0461 2.1182 44 1 1.0869 0.6162 2.5525 45 1 1.9200 -1.3568 3.8030 46 1 3.5915 -0.9263 3.3684 47 1 3.3383 1.2438 4.5401 48 1 1.6667 0.8141 4.9752 49 1 3.1092 2.0715 8.1214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181683406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:52 Heat of formation + Delta-G solvation = -16.400443 kcal Electronic energy + Delta-G solvation = -23115.167171 eV Core-core repulsion = 20040.277701 eV Total energy + Delta-G solvation = -3074.889470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90141 -38.93690 -36.70037 -35.41473 -33.69185 -31.88768 -30.97512 -30.47208 -28.06925 -27.56869 -27.46472 -24.48589 -23.78313 -23.09153 -22.08103 -21.44631 -19.66082 -18.47821 -17.80744 -16.77575 -16.54131 -16.14164 -15.95189 -15.84148 -15.30976 -15.05093 -14.66137 -14.53926 -14.31160 -14.18672 -13.95179 -13.67479 -13.49610 -13.39726 -13.08175 -12.98753 -12.70004 -12.58617 -12.48408 -12.43656 -12.36136 -12.12449 -12.03311 -11.72061 -11.60137 -11.48354 -11.34810 -11.22682 -11.14497 -10.93731 -10.54510 -9.72884 -9.48614 -8.99346 -8.19538 -6.30225 0.56920 0.58733 1.39878 1.41216 1.52319 2.41234 2.98236 3.13610 3.32383 3.70186 3.88220 4.15043 4.23116 4.24612 4.29781 4.32082 4.38877 4.40742 4.49210 4.51115 4.60566 4.72747 4.76041 4.78708 4.83610 4.91845 4.96978 5.01674 5.03973 5.15666 5.18617 5.22815 5.23445 5.27666 5.28644 5.32715 5.33586 5.43105 5.51289 5.56686 5.69830 5.71061 5.79013 5.87327 5.88092 5.95932 6.18717 6.23004 6.31201 6.61741 6.87337 7.38992 8.92337 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.002827 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.893493 B = 9903.474688 C =10557.795776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.075 0.925 4 C -0.088 4.088 5 C -0.010 4.010 6 C -0.137 4.137 7 C -0.130 4.130 8 C -0.074 4.074 9 C -0.134 4.134 10 C -0.126 4.126 11 C -0.138 4.138 12 C -0.129 4.129 13 C -0.133 4.133 14 N -0.670 5.670 15 C 0.074 3.926 16 C -0.090 4.090 17 C 0.026 3.974 18 C -0.541 4.541 19 H 0.059 0.941 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.263 1.263 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.028 0.972 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.341 0.659 43 H 0.058 0.942 44 H 0.019 0.981 45 H 0.048 0.952 46 H 0.052 0.948 47 H -0.010 1.010 48 H -0.012 1.012 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 -6.262 -25.834 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.032 4.032 3 H 0.093 0.907 4 C -0.126 4.126 5 C -0.010 4.010 6 C -0.194 4.194 7 C -0.187 4.187 8 C -0.074 4.074 9 C -0.152 4.152 10 C -0.144 4.144 11 C -0.156 4.156 12 C -0.147 4.147 13 C -0.151 4.151 14 N -0.301 5.301 15 C -0.055 4.055 16 C -0.128 4.128 17 C -0.012 4.012 18 C -0.579 4.579 19 H 0.077 0.923 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.188 1.188 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.077 0.923 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.035 -6.041 -25.885 26.580 hybrid contribution -0.550 0.089 1.370 1.479 sum -0.516 -5.952 -24.515 25.232 Atomic orbital electron populations 1.22446 0.96689 1.02439 1.02080 1.21736 0.92804 0.98224 0.90420 0.90690 1.21673 0.93862 1.00778 0.96305 1.19311 0.95453 0.94826 0.91433 1.21916 1.01050 0.94895 1.01524 1.22036 0.97419 0.99960 0.99324 1.20112 0.93639 0.97762 0.95884 1.21408 1.00395 0.99077 0.94328 1.21445 0.96317 0.99502 0.97170 1.21412 0.93588 1.00336 1.00268 1.21384 1.00545 0.98510 0.94251 1.21165 0.95598 1.00723 0.97574 1.60900 1.56431 1.09456 1.03284 1.21800 0.98290 0.95242 0.90171 1.21355 1.00200 0.97867 0.93422 1.18962 0.94592 0.94525 0.93091 1.21713 1.43533 0.96869 0.95828 0.92312 1.25982 0.95736 0.95775 1.02430 1.70096 1.49948 1.10702 1.26724 0.85469 0.78609 0.78954 0.78158 1.19789 1.20710 1.18751 0.93927 0.91841 0.90983 0.91455 0.90500 0.92527 0.93100 0.92534 0.94011 0.95288 0.89363 0.84691 0.84382 0.84454 0.84901 0.86440 0.84097 0.92306 0.96280 0.93356 0.92890 0.99180 0.99320 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 9.16 71.98 0.66 -2.70 16 2 C 0.08 1.64 2.25 44.91 0.10 1.74 16 3 H 0.07 1.72 5.62 -2.39 -0.01 1.71 16 4 C -0.09 -1.64 2.76 30.60 0.08 -1.55 16 5 C -0.01 -0.21 0.63 -52.93 -0.03 -0.25 16 6 C -0.14 -2.92 7.78 71.98 0.56 -2.36 16 7 C -0.13 -3.25 7.43 71.98 0.54 -2.72 16 8 C -0.07 -1.53 4.76 -19.87 -0.09 -1.63 16 9 C -0.13 -2.47 8.98 22.27 0.20 -2.27 16 10 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 11 C -0.14 -2.24 10.05 22.27 0.22 -2.01 16 12 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 13 C -0.13 -2.75 8.62 22.27 0.19 -2.55 16 14 N -0.67 -17.10 2.97 -491.56 -1.46 -18.56 16 15 C 0.07 2.44 5.29 86.30 0.46 2.90 16 16 C -0.09 -3.70 5.41 30.60 0.17 -3.53 16 17 C 0.03 1.38 4.97 29.85 0.15 1.53 16 18 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 21 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 22 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 26 H 0.04 0.93 7.45 -2.39 -0.02 0.91 16 27 H 0.06 1.10 8.13 -2.38 -0.02 1.08 16 28 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.07 1.24 7.81 -2.38 -0.02 1.22 16 30 H 0.08 1.23 7.16 -2.39 -0.02 1.21 16 31 H 0.06 1.32 6.20 -2.39 -0.01 1.30 16 32 H 0.05 1.09 7.39 -2.39 -0.02 1.07 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 1.06 8.11 -2.39 -0.02 1.04 16 35 H 0.03 0.72 7.13 -2.39 -0.02 0.70 16 36 H 0.09 2.52 5.60 -2.39 -0.01 2.51 16 37 H 0.14 2.08 5.89 -2.91 -0.02 2.06 16 38 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 41 H 0.12 2.39 7.07 -2.91 -0.02 2.37 16 42 H 0.34 8.29 8.47 -89.70 -0.76 7.53 16 43 H 0.06 2.02 8.06 -2.38 -0.02 2.00 16 44 H 0.02 0.64 7.44 -2.39 -0.02 0.63 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 47 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 48 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 49 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -64.08 376.48 5.33 -58.76 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.14 Total: 20.35 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 4.34 Total: -50.08 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.18 Total: -75.90 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.08 5.33 -58.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181683406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.355 kcal (2) G-P(sol) polarization free energy of solvation -64.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds