Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00160 * 2 1 4 4 H 1.48499 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47099 * 300.00002 * 3 2 1 6 6 H 1.48495 * 109.47134 * 60.00097 * 3 2 1 7 7 C 1.38801 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99739 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99936 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47196 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99996 * 0.02562 * 11 10 9 13 13 O 1.34253 * 119.99888 * 180.02562 * 11 10 9 14 14 C 1.35974 * 116.99787 * 185.38941 * 13 11 10 15 15 C 1.38692 * 120.05901 * 260.98542 * 14 13 11 16 16 C 1.38158 * 119.99687 * 179.72710 * 15 14 13 17 17 C 1.38269 * 120.10335 * 359.97438 * 16 15 14 18 18 C 1.38342 * 120.11664 * 0.04482 * 17 16 15 19 19 Cl 1.73598 * 119.99702 * 179.97438 * 18 17 16 20 20 C 1.38454 * 120.00970 * 359.95705 * 18 17 16 21 21 F 1.35100 * 120.05889 * 180.02562 * 20 18 17 22 22 H 0.96998 * 119.99725 * 359.97438 * 1 2 3 23 23 H 1.09010 * 109.47215 * 59.99894 * 10 9 7 24 24 H 1.08998 * 109.47209 * 300.00138 * 10 9 7 25 25 H 1.08002 * 120.00192 * 359.74561 * 15 14 13 26 26 H 1.07996 * 119.95175 * 180.02562 * 16 15 14 27 27 H 1.08007 * 119.94016 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 0.0001 12 8 0.7953 -5.5015 0.0000 13 8 2.8405 -6.3391 0.0007 14 6 2.3018 -7.5824 -0.1125 15 6 2.1126 -8.3632 1.0181 16 6 1.5598 -9.6241 0.9022 17 6 1.1941 -10.1095 -0.3398 18 6 1.3812 -9.3347 -1.4705 19 17 0.9215 -9.9475 -3.0283 20 6 1.9347 -8.0704 -1.3599 21 9 2.1174 -7.3127 -2.4634 22 1 -0.4850 0.8401 0.0004 23 1 3.1243 -3.7315 0.8895 24 1 3.1242 -3.7315 -0.8905 25 1 2.3970 -7.9854 1.9890 26 1 1.4125 -10.2312 1.7830 27 1 0.7618 -11.0954 -0.4273 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185918333.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = -118.125546 kcal Electronic energy + Delta-G solvation = -17624.969979 eV Core-core repulsion = 14221.478054 eV Total energy + Delta-G solvation = -3403.491925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.997 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.28876 -42.45210 -39.94391 -38.24602 -37.49414 -34.63392 -32.24550 -31.71368 -30.70817 -27.74656 -25.00468 -24.20343 -22.58785 -20.07442 -19.64298 -18.73190 -18.54059 -18.05874 -16.96503 -16.91943 -16.86578 -16.65045 -16.06731 -15.71149 -14.91254 -14.84083 -14.63412 -14.21802 -14.15219 -13.59535 -13.22488 -13.11868 -12.93226 -12.69782 -12.59884 -12.28094 -12.16171 -11.90731 -11.80028 -11.19509 -10.43857 -10.06563 -9.95584 -8.77942 -8.39872 -6.20379 -0.44804 -0.27305 0.69877 0.89409 0.98767 1.40065 1.41670 1.55483 1.74393 2.20768 2.29093 2.73295 2.95650 3.20416 3.52276 3.56507 3.72034 4.03217 4.08030 4.23726 4.34829 4.53032 4.67694 4.88666 5.01762 5.09817 5.39819 5.49417 6.16423 6.51748 7.02080 8.69668 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.003477 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.983668 B = 8051.181867 C = 8379.635300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.002 2.998 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.088 0.912 9 S -0.133 6.133 10 C -0.106 4.106 11 C 0.484 3.516 12 O -0.499 6.499 13 O -0.282 6.282 14 C 0.030 3.970 15 C -0.085 4.085 16 C -0.083 4.083 17 C -0.068 4.068 18 C -0.075 4.075 19 Cl -0.043 7.043 20 C 0.071 3.929 21 F -0.138 7.138 22 H 0.273 0.727 23 H 0.133 0.867 24 H 0.123 0.877 25 H 0.169 0.831 26 H 0.198 0.802 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 -22.033 1.888 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.695 4.695 8 H 0.106 0.894 9 S 0.094 5.906 10 C -0.254 4.254 11 C 0.327 3.673 12 O -0.384 6.384 13 O -0.198 6.198 14 C -0.012 4.012 15 C -0.103 4.103 16 C -0.101 4.101 17 C -0.086 4.086 18 C -0.103 4.103 19 Cl -0.014 7.014 20 C 0.051 3.949 21 F -0.116 7.116 22 H 0.082 0.918 23 H 0.151 0.849 24 H 0.141 0.859 25 H 0.187 0.813 26 H 0.215 0.785 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.579 -22.229 1.707 22.760 hybrid contribution 1.458 1.546 -0.784 2.265 sum 6.037 -20.683 0.923 21.566 Atomic orbital electron populations 1.70168 1.07943 1.28803 1.47678 1.26140 0.96011 1.03333 0.93498 0.84862 0.78622 0.76088 0.78121 1.17977 1.20019 1.19730 1.23221 0.95579 0.91312 1.59349 0.89389 1.85587 1.08754 0.99084 1.97198 1.23131 1.04730 0.88723 1.08848 1.23686 0.84941 0.87159 0.71537 1.90692 1.17890 1.85434 1.44346 1.84709 1.38762 1.12657 1.83663 1.18911 1.04128 0.85430 0.92761 1.21730 0.96049 0.95101 0.97454 1.21646 0.95354 0.94176 0.98923 1.21631 0.96807 1.00920 0.89226 1.21089 1.05287 0.93380 0.90556 1.98394 1.90668 1.86442 1.25910 1.18103 1.03091 0.90796 0.82936 1.91507 1.93091 1.75594 1.51455 0.91798 0.84909 0.85906 0.81345 0.78489 0.79633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.70 13.22 21.65 0.29 -54.41 15 2 C 0.02 0.85 5.49 84.86 0.47 1.32 15 3 Si 1.00 42.82 29.55 68.60 2.03 44.85 15 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 7 C -0.55 -30.51 9.50 67.95 0.65 -29.86 15 8 H 0.09 4.55 7.80 -2.91 -0.02 4.53 15 9 S -0.13 -7.21 20.58 -56.49 -1.16 -8.38 15 10 C -0.11 -4.28 6.27 71.23 0.45 -3.83 15 11 C 0.48 18.93 7.87 71.23 0.56 19.49 15 12 O -0.50 -22.69 15.59 21.95 0.34 -22.34 15 13 O -0.28 -9.29 9.89 4.08 0.04 -9.25 15 14 C 0.03 0.88 4.97 22.53 0.11 0.99 15 15 C -0.09 -1.64 9.98 22.36 0.22 -1.42 15 16 C -0.08 -1.00 10.04 22.26 0.22 -0.78 15 17 C -0.07 -0.95 9.82 22.30 0.22 -0.74 15 18 C -0.08 -1.72 6.32 22.35 0.14 -1.58 15 19 Cl -0.04 -0.95 28.61 -2.72 -0.08 -1.02 15 20 C 0.07 2.13 7.22 22.48 0.16 2.29 15 21 F -0.14 -4.85 16.68 44.97 0.75 -4.10 15 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 23 H 0.13 4.67 8.14 -2.39 -0.02 4.65 15 24 H 0.12 4.58 8.14 -2.40 -0.02 4.56 15 25 H 0.17 2.49 8.06 -2.91 -0.02 2.47 15 26 H 0.20 0.51 8.06 -2.91 -0.02 0.49 15 27 H 0.19 1.22 8.06 -2.91 -0.02 1.20 15 Total: -1.00 -73.92 289.51 6.62 -67.30 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 1.22 Total: 1.46 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 3.20 Total: -14.10 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.29 Total: -54.41 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: 0.38 Total: -31.59 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.75 Total: -4.10 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -7.21 SS G_CDS: -1.16 Total: -8.38 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -73.92 6.62 -67.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185918333.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.828 kcal (2) G-P(sol) polarization free energy of solvation -73.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds