Wall clock time and date at job start Tue Mar 31 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 H 1.08997 * 109.47762 * 55.22002 * 3 2 1 5 5 C 1.53000 * 109.47013 * 175.21831 * 3 2 1 6 6 N 1.46901 * 109.47223 * 294.82116 * 5 3 2 7 7 C 1.46895 * 110.99943 * 293.95211 * 6 5 3 8 8 C 1.52998 * 109.47282 * 163.96529 * 7 6 5 9 9 C 1.46895 * 110.99956 * 169.99838 * 6 5 3 10 10 C 1.53001 * 109.47320 * 284.33978 * 9 6 5 11 11 C 1.53006 * 109.47306 * 184.90553 * 10 9 6 12 12 C 1.50696 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00111 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00108 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00354 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47059 * 59.99965 * 16 14 12 18 18 H 1.48499 * 109.47073 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47117 * 300.00154 * 16 14 12 20 20 C 1.50701 * 109.47205 * 295.21505 * 3 2 1 21 21 C 1.38232 * 120.00242 * 299.73307 * 20 3 2 22 22 C 1.38234 * 120.00182 * 179.78849 * 21 20 3 23 23 C 1.38235 * 119.99678 * 0.43753 * 22 21 20 24 24 C 1.38236 * 120.00384 * 359.81337 * 23 22 21 25 25 C 1.38235 * 119.99446 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47251 * 56.09241 * 1 2 3 27 27 H 1.08998 * 109.47294 * 296.09687 * 1 2 3 28 28 H 1.08995 * 109.47186 * 176.09330 * 1 2 3 29 29 H 1.08994 * 109.46969 * 119.99706 * 2 1 3 30 30 H 1.08995 * 109.47216 * 240.00055 * 2 1 3 31 31 H 1.09000 * 109.47151 * 54.82319 * 5 3 2 32 32 H 1.09002 * 109.47292 * 174.82215 * 5 3 2 33 33 H 1.08997 * 109.47372 * 283.97138 * 7 6 5 34 34 H 1.09001 * 109.47241 * 43.96807 * 7 6 5 35 35 H 1.09001 * 109.47449 * 186.27912 * 8 7 6 36 36 H 1.09001 * 109.47025 * 306.27780 * 8 7 6 37 37 H 1.09002 * 109.46907 * 66.27642 * 8 7 6 38 38 H 1.09000 * 109.47273 * 44.34229 * 9 6 5 39 39 H 1.09005 * 109.47188 * 164.33958 * 9 6 5 40 40 H 1.09005 * 109.47182 * 304.90261 * 10 9 6 41 41 H 1.08999 * 109.47284 * 64.90130 * 10 9 6 42 42 H 1.09005 * 109.46762 * 299.99966 * 11 10 9 43 43 H 1.08999 * 109.47293 * 59.99583 * 11 10 9 44 44 H 0.97003 * 120.00558 * 180.02562 * 15 14 12 45 45 H 1.08001 * 119.99799 * 359.97438 * 21 20 3 46 46 H 1.08001 * 120.00380 * 180.27260 * 22 21 20 47 47 H 1.08000 * 119.99992 * 179.83757 * 23 22 21 48 48 H 1.07992 * 120.00135 * 180.02562 * 24 23 22 49 49 H 1.08001 * 119.99599 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6084 1.9805 0.8440 5 6 3.5652 1.4442 0.1202 6 7 3.9540 0.8985 1.4276 7 6 3.5165 1.7809 2.5175 8 6 3.5703 1.0190 3.8432 9 6 5.4026 0.6631 1.4900 10 6 5.7497 -0.5954 0.6921 11 6 7.2379 -0.9098 0.8573 12 6 7.5799 -2.1490 0.0709 13 1 6.8126 -2.6609 -0.4910 14 6 8.8725 -2.6287 0.0678 15 7 9.8069 -2.0051 0.7515 16 14 9.2963 -4.1652 -0.9065 17 1 8.9939 -3.9396 -2.3428 18 1 10.7407 -4.4702 -0.7462 19 1 8.4910 -5.3074 -0.4045 20 6 1.6367 2.1179 -1.2854 21 6 2.0723 1.6146 -2.4969 22 6 1.6989 2.2315 -3.6762 23 6 0.8971 3.3571 -3.6435 24 6 0.4657 3.8636 -2.4318 25 6 0.8356 3.2440 -1.2528 26 1 -0.3633 0.5733 -0.8529 27 1 -0.3634 0.4520 0.9229 28 1 -0.3633 -1.0252 -0.0700 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.9928 0.8295 -0.6718 32 1 3.9358 2.4651 0.0279 33 1 4.1751 2.6479 2.5696 34 1 2.4950 2.1114 2.3296 35 1 3.1417 1.6349 4.6339 36 1 3.0007 0.0940 3.7541 37 1 4.6069 0.7855 4.0862 38 1 5.9284 1.5186 1.0661 39 1 5.7045 0.5294 2.5289 40 1 5.1582 -1.4337 1.0603 41 1 5.5281 -0.4298 -0.3622 42 1 7.8294 -0.0715 0.4891 43 1 7.4594 -1.0755 1.9116 44 1 10.7164 -2.3423 0.7491 45 1 2.7021 0.7375 -2.5222 46 1 2.0356 1.8357 -4.6230 47 1 0.6074 3.8407 -4.5648 48 1 -0.1610 4.7427 -2.4064 49 1 0.4982 3.6394 -0.3061 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186606805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:46 Heat of formation + Delta-G solvation = -4.385157 kcal Electronic energy + Delta-G solvation = -23232.049637 eV Core-core repulsion = 20157.681190 eV Total energy + Delta-G solvation = -3074.368448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83446 -37.98497 -35.20556 -33.65602 -31.67601 -30.99073 -30.89003 -30.19353 -27.94547 -25.89627 -23.51994 -23.16165 -22.85978 -22.30436 -20.85661 -20.04010 -19.33866 -17.06215 -16.25686 -15.80474 -15.42189 -15.05867 -14.69783 -14.52171 -14.22295 -14.16011 -13.73460 -13.64329 -13.51840 -13.37485 -12.61106 -12.57639 -12.30435 -12.08754 -11.78009 -11.69531 -11.52577 -11.47917 -11.22482 -11.09964 -10.94510 -10.87241 -10.67266 -10.55161 -10.52525 -10.34934 -10.20806 -9.53657 -9.27094 -9.02883 -8.98932 -8.72892 -8.30056 -7.98818 -5.95628 -3.97454 1.29478 1.33010 3.36141 3.40176 3.42956 3.70975 4.12484 4.50084 4.64753 4.78324 4.92009 4.95588 5.07929 5.13910 5.19789 5.29602 5.37839 5.40106 5.43232 5.45045 5.51028 5.62923 5.66924 5.72104 5.78378 5.89587 5.94927 5.95097 6.04224 6.05183 6.09716 6.12404 6.18401 6.29984 6.32907 6.37423 6.43686 6.46579 6.52867 6.66842 6.75383 6.86734 6.94225 7.20652 7.43001 7.47486 7.73432 7.89562 8.05346 8.48935 9.09709 9.66250 11.15846 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.003609 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.799036 B = 7755.840666 C = 8808.317901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.046 4.046 4 H 0.076 0.924 5 C 0.063 3.937 6 N -0.534 5.534 7 C 0.046 3.954 8 C -0.147 4.147 9 C 0.054 3.946 10 C -0.100 4.100 11 C 0.022 3.978 12 C -0.517 4.517 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.065 4.065 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.094 11.289 -2.271 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.064 4.064 4 H 0.094 0.906 5 C -0.065 4.065 6 N -0.258 5.258 7 C -0.082 4.082 8 C -0.204 4.204 9 C -0.073 4.073 10 C -0.139 4.139 11 C -0.016 4.016 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.066 4.066 21 C -0.130 4.130 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.138 4.138 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.135 0.865 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.131 10.830 -2.153 22.960 hybrid contribution 0.802 0.054 -0.703 1.068 sum -19.329 10.884 -2.856 22.365 Atomic orbital electron populations 1.21791 0.96592 1.01184 1.01226 1.21491 0.94736 0.94969 1.03389 1.20292 0.95576 0.96700 0.93860 0.90563 1.22152 0.93932 0.97956 0.92506 1.62103 1.16088 1.45909 1.01747 1.22115 0.99880 0.94100 0.92094 1.21775 1.02343 1.00743 0.95577 1.22335 0.85024 0.98587 1.01317 1.21597 0.99711 0.94835 0.97709 1.19070 0.89188 0.96302 0.97011 1.21219 0.94206 1.10631 1.29479 0.92765 1.25022 0.96588 0.97174 0.95708 1.69957 1.01875 1.40131 1.41736 0.86677 0.77192 0.83663 0.80586 1.20286 1.21344 1.20228 1.19904 0.96578 0.95071 0.95043 1.21108 0.99790 1.00193 0.91921 1.21167 0.98133 0.96037 0.98245 1.21105 0.98978 0.96984 0.97755 1.21090 1.00318 0.99894 0.92662 1.21047 0.98829 0.95853 0.98085 0.93111 0.93235 0.93070 0.89912 0.92086 0.90005 0.95282 0.95404 0.91260 0.92981 0.91805 0.92505 0.95438 0.91094 0.92594 0.93810 0.96962 0.96704 0.93030 0.85786 0.86192 0.86483 0.86453 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.79 37.16 0.36 -1.17 16 2 C -0.11 -1.26 5.24 -26.73 -0.14 -1.40 16 3 C -0.05 -0.52 1.99 -91.77 -0.18 -0.70 16 4 H 0.08 0.83 5.83 -51.93 -0.30 0.53 16 5 C 0.06 0.85 3.91 -3.82 -0.01 0.83 16 6 N -0.53 -7.77 3.77 -234.63 -0.89 -8.65 16 7 C 0.05 0.57 5.55 -3.83 -0.02 0.55 16 8 C -0.15 -1.74 9.87 37.16 0.37 -1.37 16 9 C 0.05 0.95 4.83 -3.83 -0.02 0.93 16 10 C -0.10 -2.10 5.19 -26.73 -0.14 -2.24 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.07 -0.73 3.69 -104.62 -0.39 -1.12 16 21 C -0.11 -1.29 8.71 -39.58 -0.34 -1.63 16 22 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.23 9.67 -39.58 -0.38 -1.61 16 26 H 0.05 0.53 7.25 -51.93 -0.38 0.15 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.07 7.63 -51.93 -0.40 0.67 16 30 H 0.06 0.75 7.25 -51.93 -0.38 0.37 16 31 H 0.08 1.22 6.13 -51.93 -0.32 0.90 16 32 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.03 0.35 8.05 -51.93 -0.42 -0.06 16 34 H 0.07 0.76 5.87 -51.93 -0.30 0.46 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.74 6.75 -51.93 -0.35 0.39 16 38 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 39 H 0.07 1.25 6.35 -51.93 -0.33 0.92 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.91 6.94 -51.93 -0.36 0.55 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.12 1.42 7.14 -52.49 -0.37 1.05 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 49 H 0.12 1.03 7.95 -52.49 -0.42 0.61 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -30.12 382.49 -10.98 -41.10 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.93 Total: -1.54 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -2.64 Total: -26.98 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.15 Total: -35.26 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.12 -10.98 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186606805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.719 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds