Wall clock time and date at job start Tue Mar 31 2020 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 H 1.08997 * 109.47762 * 55.22002 * 3 2 1 5 5 C 1.53000 * 109.47013 * 175.21831 * 3 2 1 6 6 N 1.46901 * 109.47223 * 294.82116 * 5 3 2 7 7 C 1.46895 * 110.99943 * 293.95211 * 6 5 3 8 8 C 1.52998 * 109.47282 * 163.96529 * 7 6 5 9 9 C 1.46895 * 110.99956 * 169.99838 * 6 5 3 10 10 C 1.53001 * 109.47320 * 284.33978 * 9 6 5 11 11 C 1.53006 * 109.47306 * 184.90553 * 10 9 6 12 12 C 1.50696 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00111 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00108 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00354 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47059 * 59.99965 * 16 14 12 18 18 H 1.48499 * 109.47073 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47117 * 300.00154 * 16 14 12 20 20 C 1.50701 * 109.47205 * 295.21505 * 3 2 1 21 21 C 1.38232 * 120.00242 * 299.73307 * 20 3 2 22 22 C 1.38234 * 120.00182 * 179.78849 * 21 20 3 23 23 C 1.38235 * 119.99678 * 0.43753 * 22 21 20 24 24 C 1.38236 * 120.00384 * 359.81337 * 23 22 21 25 25 C 1.38235 * 119.99446 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47251 * 56.09241 * 1 2 3 27 27 H 1.08998 * 109.47294 * 296.09687 * 1 2 3 28 28 H 1.08995 * 109.47186 * 176.09330 * 1 2 3 29 29 H 1.08994 * 109.46969 * 119.99706 * 2 1 3 30 30 H 1.08995 * 109.47216 * 240.00055 * 2 1 3 31 31 H 1.09000 * 109.47151 * 54.82319 * 5 3 2 32 32 H 1.09002 * 109.47292 * 174.82215 * 5 3 2 33 33 H 1.08997 * 109.47372 * 283.97138 * 7 6 5 34 34 H 1.09001 * 109.47241 * 43.96807 * 7 6 5 35 35 H 1.09001 * 109.47449 * 186.27912 * 8 7 6 36 36 H 1.09001 * 109.47025 * 306.27780 * 8 7 6 37 37 H 1.09002 * 109.46907 * 66.27642 * 8 7 6 38 38 H 1.09000 * 109.47273 * 44.34229 * 9 6 5 39 39 H 1.09005 * 109.47188 * 164.33958 * 9 6 5 40 40 H 1.09005 * 109.47182 * 304.90261 * 10 9 6 41 41 H 1.08999 * 109.47284 * 64.90130 * 10 9 6 42 42 H 1.09005 * 109.46762 * 299.99966 * 11 10 9 43 43 H 1.08999 * 109.47293 * 59.99583 * 11 10 9 44 44 H 0.97003 * 120.00558 * 180.02562 * 15 14 12 45 45 H 1.08001 * 119.99799 * 359.97438 * 21 20 3 46 46 H 1.08001 * 120.00380 * 180.27260 * 22 21 20 47 47 H 1.08000 * 119.99992 * 179.83757 * 23 22 21 48 48 H 1.07992 * 120.00135 * 180.02562 * 24 23 22 49 49 H 1.08001 * 119.99599 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6084 1.9805 0.8440 5 6 3.5652 1.4442 0.1202 6 7 3.9540 0.8985 1.4276 7 6 3.5165 1.7809 2.5175 8 6 3.5703 1.0190 3.8432 9 6 5.4026 0.6631 1.4900 10 6 5.7497 -0.5954 0.6921 11 6 7.2379 -0.9098 0.8573 12 6 7.5799 -2.1490 0.0709 13 1 6.8126 -2.6609 -0.4910 14 6 8.8725 -2.6287 0.0678 15 7 9.8069 -2.0051 0.7515 16 14 9.2963 -4.1652 -0.9065 17 1 8.9939 -3.9396 -2.3428 18 1 10.7407 -4.4702 -0.7462 19 1 8.4910 -5.3074 -0.4045 20 6 1.6367 2.1179 -1.2854 21 6 2.0723 1.6146 -2.4969 22 6 1.6989 2.2315 -3.6762 23 6 0.8971 3.3571 -3.6435 24 6 0.4657 3.8636 -2.4318 25 6 0.8356 3.2440 -1.2528 26 1 -0.3633 0.5733 -0.8529 27 1 -0.3634 0.4520 0.9229 28 1 -0.3633 -1.0252 -0.0700 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.9928 0.8295 -0.6718 32 1 3.9358 2.4651 0.0279 33 1 4.1751 2.6479 2.5696 34 1 2.4950 2.1114 2.3296 35 1 3.1417 1.6349 4.6339 36 1 3.0007 0.0940 3.7541 37 1 4.6069 0.7855 4.0862 38 1 5.9284 1.5186 1.0661 39 1 5.7045 0.5294 2.5289 40 1 5.1582 -1.4337 1.0603 41 1 5.5281 -0.4298 -0.3622 42 1 7.8294 -0.0715 0.4891 43 1 7.4594 -1.0755 1.9116 44 1 10.7164 -2.3423 0.7491 45 1 2.7021 0.7375 -2.5222 46 1 2.0356 1.8357 -4.6230 47 1 0.6074 3.8407 -4.5648 48 1 -0.1610 4.7427 -2.4064 49 1 0.4982 3.6394 -0.3061 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186606805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:45 Heat of formation + Delta-G solvation = -18.070489 kcal Electronic energy + Delta-G solvation = -23232.643078 eV Core-core repulsion = 20157.681190 eV Total energy + Delta-G solvation = -3074.961888 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70919 -39.09143 -36.35165 -35.49715 -33.49885 -31.82468 -31.76003 -31.25458 -29.34879 -27.45936 -24.89969 -24.44998 -23.74411 -23.11031 -22.26682 -21.55781 -20.35634 -18.49242 -17.82982 -16.86064 -16.64200 -16.40179 -15.97826 -15.71581 -15.49167 -15.15588 -15.05013 -14.63136 -14.51315 -14.33055 -14.16456 -13.69326 -13.45580 -13.36420 -13.22328 -12.99426 -12.79513 -12.65815 -12.48292 -12.44379 -12.34313 -12.07725 -11.94113 -11.90054 -11.78995 -11.41576 -11.40325 -11.27266 -11.25606 -10.97706 -10.54290 -9.76758 -9.54388 -9.20376 -8.19702 -6.30714 0.50643 0.55119 1.39309 1.42714 1.50600 2.40931 2.86672 3.01889 3.13177 3.73130 3.88681 4.08268 4.15343 4.19573 4.20928 4.26399 4.31278 4.33760 4.42229 4.52437 4.57211 4.64687 4.68632 4.72083 4.75117 4.79160 4.81132 4.92524 4.94180 5.06225 5.08962 5.11000 5.16923 5.20386 5.22654 5.25901 5.30610 5.41631 5.42938 5.53122 5.54644 5.65549 5.68448 5.75412 5.82588 5.86684 6.13649 6.17710 6.26173 6.30238 6.85834 7.38335 8.92113 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.003609 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.799036 B = 7755.840666 C = 8808.317901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.033 4.033 4 H 0.088 0.912 5 C 0.066 3.934 6 N -0.535 5.535 7 C 0.046 3.954 8 C -0.144 4.144 9 C 0.067 3.933 10 C -0.083 4.083 11 C 0.027 3.973 12 C -0.542 4.542 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.076 4.076 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.124 4.124 25 C -0.125 4.125 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.021 0.979 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.042 0.958 42 H -0.013 1.013 43 H -0.009 1.009 44 H 0.264 0.736 45 H 0.112 0.888 46 H 0.130 0.870 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.110 11.835 -2.750 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.051 4.051 4 H 0.107 0.893 5 C -0.062 4.062 6 N -0.259 5.259 7 C -0.082 4.082 8 C -0.201 4.201 9 C -0.061 4.061 10 C -0.121 4.121 11 C -0.011 4.011 12 C -0.580 4.580 13 H 0.076 0.924 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.077 4.077 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.143 4.143 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.005 0.995 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.130 0.870 46 H 0.148 0.852 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.169 11.383 -2.632 25.059 hybrid contribution 1.420 -0.064 -0.563 1.528 sum -20.749 11.319 -3.195 23.851 Atomic orbital electron populations 1.21715 0.95143 1.01482 1.01691 1.21427 0.95944 0.94898 1.02035 1.20162 0.93573 0.96732 0.94679 0.89347 1.22129 0.95671 0.97091 0.91327 1.62047 1.13622 1.47236 1.03032 1.22220 1.00909 0.93650 0.91396 1.21759 1.01391 1.00979 0.95991 1.22034 0.87274 0.96513 1.00291 1.21319 0.96012 0.96462 0.98310 1.18964 0.92260 0.94840 0.95018 1.21652 0.94788 1.11597 1.29964 0.92382 1.25981 0.96403 1.00725 0.96701 1.70091 1.02349 1.41948 1.43066 0.85518 0.77142 0.79298 0.79214 1.19191 1.20708 1.19121 1.19893 0.97469 0.95820 0.94518 1.21159 1.00476 1.00430 0.92835 1.21383 0.98467 0.96549 0.98337 1.21427 0.98243 0.96509 0.98957 1.21433 1.00061 1.00412 0.92255 1.21287 0.98407 0.95350 0.99295 0.93229 0.92145 0.92824 0.91281 0.93399 0.91954 0.95623 0.95409 0.89086 0.90512 0.92244 0.94179 0.96121 0.91314 0.92947 0.93878 0.99452 0.99022 0.92768 0.86959 0.85179 0.84301 0.83997 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.79 71.98 0.70 -2.00 16 2 C -0.11 -2.40 5.24 30.59 0.16 -2.24 16 3 C -0.03 -0.72 1.99 -11.54 -0.02 -0.74 16 4 H 0.09 1.71 5.83 -2.39 -0.01 1.70 16 5 C 0.07 1.78 3.91 86.30 0.34 2.12 16 6 N -0.54 -15.47 3.77 -896.24 -3.38 -18.86 16 7 C 0.05 1.07 5.55 86.30 0.48 1.55 16 8 C -0.14 -3.22 9.87 71.98 0.71 -2.51 16 9 C 0.07 2.39 4.83 86.30 0.42 2.81 16 10 C -0.08 -3.59 5.19 30.60 0.16 -3.43 16 11 C 0.03 1.47 4.97 29.85 0.15 1.61 16 12 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 16 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C -0.08 -1.64 3.69 -19.87 -0.07 -1.71 16 21 C -0.13 -3.00 8.71 22.27 0.19 -2.81 16 22 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 23 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 24 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 25 C -0.13 -2.29 9.67 22.27 0.22 -2.08 16 26 H 0.05 0.95 7.25 -2.39 -0.02 0.94 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.76 7.63 -2.39 -0.02 1.74 16 30 H 0.05 1.20 7.25 -2.39 -0.02 1.18 16 31 H 0.06 1.93 6.13 -2.39 -0.01 1.91 16 32 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 33 H 0.03 0.67 8.05 -2.39 -0.02 0.65 16 34 H 0.09 1.77 5.87 -2.39 -0.01 1.75 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.02 6.75 -2.39 -0.02 1.01 16 38 H 0.02 0.76 8.00 -2.39 -0.02 0.74 16 39 H 0.07 2.50 6.35 -2.38 -0.02 2.48 16 40 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.04 1.85 6.94 -2.39 -0.02 1.83 16 42 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.11 2.73 7.14 -2.91 -0.02 2.71 16 46 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 49 H 0.13 1.94 7.95 -2.91 -0.02 1.92 16 Total: -1.00 -65.46 382.49 4.60 -60.86 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.88 Total: 15.45 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 4.79 Total: -46.86 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -3.10 Total: -76.64 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.46 4.60 -60.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186606805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.789 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds