Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38188 * 119.61145 * 2 1 4 4 C 1.38664 * 119.19199 * 179.77514 * 3 2 1 5 5 C 1.38614 * 118.43549 * 0.49798 * 4 3 2 6 6 S 1.76200 * 120.42252 * 179.77201 * 5 4 3 7 7 O 1.42096 * 106.40309 * 228.51446 * 6 5 4 8 8 O 1.42094 * 106.40359 * 1.43988 * 6 5 4 9 9 N 1.65604 * 107.21627 * 114.97633 * 6 5 4 10 10 C 1.46506 * 120.00081 * 269.99622 * 9 6 5 11 11 C 1.36940 * 120.00005 * 90.00257 * 9 6 5 12 12 H 1.07997 * 120.00331 * 23.34015 * 11 9 6 13 13 C 1.38816 * 119.99719 * 203.34409 * 11 9 6 14 14 N 1.31618 * 120.00145 * 10.67878 * 13 11 9 15 15 Si 1.86794 * 119.99588 * 190.67483 * 13 11 9 16 16 H 1.48497 * 109.47481 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46890 * 120.00249 * 15 13 11 18 18 H 1.48505 * 109.47485 * 240.00018 * 15 13 11 19 19 C 1.38347 * 119.15012 * 359.74767 * 5 4 3 20 20 Cl 1.73604 * 119.63297 * 179.97438 * 19 5 4 21 21 N 1.31876 * 119.60686 * 180.28275 * 2 1 3 22 22 H 1.08997 * 109.46773 * 269.72215 * 1 2 3 23 23 H 1.08999 * 109.46953 * 29.72202 * 1 2 3 24 24 H 1.08997 * 109.47136 * 149.72017 * 1 2 3 25 25 H 1.07995 * 120.40159 * 0.02562 * 3 2 1 26 26 H 1.07996 * 120.78398 * 180.22473 * 4 3 2 27 27 H 1.08999 * 109.46532 * 94.14634 * 10 9 6 28 28 H 1.08996 * 109.46744 * 214.14689 * 10 9 6 29 29 H 1.08995 * 109.46800 * 334.14843 * 10 9 6 30 30 H 0.96997 * 120.00037 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5764 1.1913 0.0048 5 6 4.2276 -0.0324 -0.0012 6 16 5.9880 -0.1064 -0.0017 7 8 6.3510 -1.0204 -1.0273 8 8 6.4461 1.2381 0.0391 9 7 6.4497 -0.8013 1.4288 10 6 6.7024 0.0378 2.6029 11 6 6.5956 -2.1602 1.5143 12 1 6.7850 -2.7401 0.6231 13 6 6.4999 -2.7924 2.7464 14 7 6.0643 -2.1272 3.7953 15 14 6.9892 -4.5871 2.9157 16 1 7.4426 -5.1029 1.5991 17 1 8.0934 -4.7082 3.9013 18 1 5.8211 -5.3769 3.3817 19 6 3.4775 -1.1949 -0.0064 20 17 4.2800 -2.7343 -0.0146 21 7 2.1586 -1.1466 -0.0057 22 1 -0.3633 -0.0050 1.0276 23 1 -0.3633 0.8925 -0.5095 24 1 -0.3633 -0.8874 -0.5182 25 1 1.6501 2.1368 0.0004 26 1 4.1359 2.1150 0.0085 27 1 5.7979 0.0971 3.2084 28 1 7.5077 -0.3978 3.1943 29 1 6.9893 1.0383 2.2794 30 1 5.9971 -2.5690 4.6562 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190423902.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -51.930393 kcal Electronic energy + Delta-G solvation = -19625.743793 eV Core-core repulsion = 16380.875362 eV Total energy + Delta-G solvation = -3244.868432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.25446 -37.94874 -37.56279 -37.41431 -36.34669 -34.14071 -33.38612 -33.24060 -28.79243 -28.33404 -25.39199 -24.73775 -23.54932 -20.38193 -19.33357 -18.72916 -18.38120 -17.76068 -17.13186 -16.42299 -16.16446 -15.80932 -15.35823 -15.08581 -14.63377 -14.46534 -13.85582 -13.70150 -13.63560 -13.27041 -13.14173 -13.06001 -12.73948 -12.70461 -12.41654 -12.40530 -12.17870 -12.02188 -11.93074 -11.85268 -11.15025 -11.03406 -10.68674 -10.02414 -9.92545 -8.41815 -5.90486 -0.47339 -0.09186 0.01332 0.78033 1.46082 1.48259 1.59299 2.20131 2.36758 2.63755 2.91824 3.16925 3.37216 3.57722 3.70585 4.09790 4.21360 4.28831 4.58125 4.64387 4.73131 4.80840 4.88978 5.04422 5.06902 5.25270 5.36381 5.49952 5.59944 6.40212 6.56238 6.73949 7.23110 8.54674 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.008382 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.841181 B = 3339.881629 C = 3941.060411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.158 3.842 3 C -0.184 4.184 4 C 0.004 3.996 5 C -0.730 4.730 6 S 2.525 3.475 7 O -0.999 6.999 8 O -1.015 7.015 9 N -0.807 5.807 10 C 0.129 3.871 11 C -0.238 4.238 12 H 0.107 0.893 13 C 0.010 3.990 14 N -0.843 5.843 15 Si 0.962 3.038 16 H -0.260 1.260 17 H -0.261 1.261 18 H -0.272 1.272 19 C 0.242 3.758 20 Cl -0.010 7.010 21 N -0.520 5.520 22 H 0.098 0.902 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.192 0.808 26 H 0.165 0.835 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 3.878 -0.897 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.021 3.979 3 C -0.204 4.204 4 C -0.022 4.022 5 C -0.811 4.811 6 S 2.623 3.377 7 O -0.989 6.989 8 O -1.005 7.005 9 N -0.631 5.631 10 C -0.017 4.017 11 C -0.388 4.388 12 H 0.125 0.875 13 C -0.202 4.202 14 N -0.483 5.483 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.186 1.186 18 H -0.198 1.198 19 C 0.077 3.923 20 Cl 0.019 6.981 21 N -0.234 5.234 22 H 0.116 0.884 23 H 0.133 0.867 24 H 0.097 0.903 25 H 0.209 0.791 26 H 0.182 0.818 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.564 3.524 -1.571 9.393 hybrid contribution 0.068 -0.431 0.379 0.578 sum -8.496 3.093 -1.193 9.120 Atomic orbital electron populations 1.20955 0.84486 1.05410 1.04850 1.22312 0.99218 0.87079 0.89291 1.22559 0.94140 1.01001 1.02725 1.21681 0.95844 0.96255 0.88416 1.32838 1.34271 0.98007 1.15945 1.12118 0.75202 0.72805 0.77547 1.93337 1.82844 1.63766 1.58947 1.93272 1.81047 1.38154 1.87977 1.54220 1.65898 1.13887 1.29079 1.21289 1.01719 0.91679 0.86966 1.20126 1.39602 0.82930 0.96134 0.87517 1.26282 0.95576 1.03032 0.95335 1.70124 1.38635 1.38273 1.01299 0.85291 0.78859 0.77728 0.79666 1.18413 1.18589 1.19763 1.21345 0.89985 0.87849 0.93122 1.98470 1.75061 1.28931 1.95650 1.67018 1.07867 1.32043 1.16447 0.88376 0.86725 0.90327 0.79104 0.81785 0.93579 0.90764 0.92564 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.17 71.24 0.72 -1.12 16 2 C 0.16 4.77 6.78 42.54 0.29 5.06 16 3 C -0.18 -5.08 9.74 22.36 0.22 -4.86 16 4 C 0.00 0.15 9.66 22.46 0.22 0.37 16 5 C -0.73 -31.87 5.93 22.39 0.13 -31.73 16 6 S 2.52 121.73 5.18 -56.49 -0.29 121.44 16 7 O -1.00 -52.72 15.32 -128.00 -1.96 -54.68 16 8 O -1.02 -49.60 15.61 -128.00 -2.00 -51.59 16 9 N -0.81 -39.05 3.31 -364.89 -1.21 -40.26 16 10 C 0.13 5.72 8.92 127.77 1.14 6.86 16 11 C -0.24 -11.73 6.67 84.03 0.56 -11.17 16 12 H 0.11 5.41 6.47 -2.91 -0.02 5.39 16 13 C 0.01 0.45 5.14 84.86 0.44 0.88 16 14 N -0.84 -39.70 10.61 21.65 0.23 -39.47 16 15 Si 0.96 37.46 29.57 68.60 2.03 39.48 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 19 C 0.24 10.75 7.26 84.70 0.61 11.37 16 20 Cl -0.01 -0.46 23.38 -2.72 -0.06 -0.52 16 21 N -0.52 -20.45 10.25 -174.85 -1.79 -22.24 16 22 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 23 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.16 5.20 7.44 -2.91 -0.02 5.18 16 27 H 0.05 2.07 7.40 -2.39 -0.02 2.05 16 28 H 0.07 3.27 7.23 -2.39 -0.02 3.25 16 29 H 0.06 2.31 6.93 -2.39 -0.02 2.30 16 30 H 0.28 12.33 8.31 -92.71 -0.77 11.56 16 Total: -1.00 -63.60 281.03 0.45 -63.15 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.18 Total: 9.05 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.33 Total: -24.35 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -2.77 Total: -101.97 kcal Atomic # 8 Polarization: -102.31 SS G_CDS: -3.96 Total: -106.27 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 121.73 SS G_CDS: -0.29 Total: 121.44 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.06 Total: -0.52 kcal Total: -63.60 0.45 -63.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190423902.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.215 kcal (2) G-P(sol) polarization free energy of solvation -63.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds