Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.47078 * 296.39075 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.38237 * 119.98326 * 269.73328 * 14 13 11 16 16 C 1.38188 * 120.03658 * 179.72454 * 15 14 13 17 17 C 1.38486 * 120.00065 * 0.54487 * 16 15 14 18 18 F 1.35102 * 120.01928 * 179.75000 * 17 16 15 19 19 C 1.38414 * 119.96087 * 359.72378 * 17 16 15 20 20 C 1.38335 * 119.96119 * 0.02562 * 19 17 16 21 21 Cl 1.73603 * 119.99870 * 179.97438 * 20 19 17 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 28 28 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 29 29 H 1.08005 * 119.98368 * 359.97438 * 15 14 13 30 30 H 1.08003 * 120.00194 * 180.27405 * 16 15 14 31 31 H 1.08005 * 120.02106 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2331 0.0002 12 8 0.5864 -5.3452 1.2007 13 6 2.6651 -6.4701 -0.0007 14 6 2.0636 -7.8519 0.0005 15 6 1.7942 -8.4871 1.1984 16 6 1.2374 -9.7518 1.2008 17 6 0.9594 -10.3882 0.0027 18 9 0.4196 -11.6268 0.0046 19 6 1.2343 -9.7545 -1.1968 20 6 1.7869 -8.4863 -1.1973 21 17 2.1327 -7.6908 -2.7011 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 3.2807 -6.3422 -0.8910 28 1 3.2820 -6.3421 0.8890 29 1 2.0153 -7.9930 2.1330 30 1 1.0231 -10.2457 2.1370 31 1 1.0174 -10.2498 -2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190725985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -77.890927 kcal Electronic energy + Delta-G solvation = -17654.527963 eV Core-core repulsion = 14388.613836 eV Total energy + Delta-G solvation = -3265.914126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.18390 -39.53518 -36.68458 -35.22676 -33.70281 -32.77155 -31.23229 -30.91725 -27.06657 -25.28301 -23.43280 -22.16386 -21.06219 -18.10199 -17.20106 -16.95785 -16.53233 -16.00040 -15.89871 -14.95603 -14.94326 -14.54878 -14.44460 -14.10240 -13.86805 -13.64869 -13.25069 -12.72459 -12.42734 -12.21548 -11.79105 -11.60750 -11.50285 -11.29556 -11.09211 -10.97675 -10.78112 -10.23124 -10.16769 -9.62222 -9.34893 -9.22865 -8.61506 -8.43226 -7.71904 -6.06257 -4.10872 0.63314 0.77529 1.79770 1.92916 3.05836 3.21693 3.29446 3.34397 3.36370 3.93675 4.12801 4.34942 4.40891 4.51938 4.59704 4.84184 5.15699 5.25412 5.28631 5.49940 5.60194 5.78824 5.82216 5.89755 6.03279 6.09571 6.42760 6.75901 7.46442 7.57394 7.88344 8.29127 8.93487 9.53338 11.04332 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.034061 B = 0.003428 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.865684 B = 8167.210426 C = 8574.086212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.415 4.415 11 S 1.222 4.778 12 O -0.841 6.841 13 C -0.426 4.426 14 C -0.052 4.052 15 C -0.073 4.073 16 C -0.142 4.142 17 C 0.102 3.898 18 F -0.135 7.135 19 C -0.142 4.142 20 C -0.010 4.010 21 Cl -0.045 7.045 22 H 0.264 0.736 23 H 0.029 0.971 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -20.386 -4.767 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.555 4.555 11 S 1.423 4.577 12 O -0.837 6.837 13 C -0.558 4.558 14 C -0.054 4.054 15 C -0.092 4.092 16 C -0.161 4.161 17 C 0.082 3.918 18 F -0.113 7.113 19 C -0.161 4.161 20 C -0.038 4.038 21 Cl -0.016 7.016 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.126 0.874 26 H 0.093 0.907 27 H 0.148 0.852 28 H 0.118 0.882 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.251 -20.424 -4.877 21.248 hybrid contribution 1.803 1.028 1.726 2.700 sum 5.054 -19.396 -3.150 20.289 Atomic orbital electron populations 1.69949 1.06051 1.27032 1.50055 1.25044 0.94920 0.99341 0.95116 0.86595 0.79547 0.82857 0.78647 1.20059 1.21145 1.20293 1.21102 0.92990 0.90371 1.51548 0.92482 1.18795 0.92957 0.90083 0.98188 1.27611 1.09633 1.12044 1.06182 1.70859 0.87220 0.87071 1.12586 1.93089 1.55757 1.83954 1.50858 1.26974 1.15448 1.04681 1.08729 1.19116 0.99472 0.95170 0.91610 1.20946 0.96730 0.93566 0.97949 1.21228 1.01263 0.96069 0.97546 1.17424 0.99135 0.81256 0.93940 1.91521 1.83507 1.38950 1.97355 1.20921 1.02312 0.94522 0.98356 1.20450 1.02357 0.93512 0.87507 1.98393 1.93322 1.79484 1.30399 0.92680 0.95260 0.95863 0.87440 0.90739 0.85188 0.88210 0.84090 0.84012 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C -0.41 -7.94 5.86 37.16 0.22 -7.72 16 11 S 1.22 19.52 13.14 -107.50 -1.41 18.11 16 12 O -0.84 -18.24 18.14 -35.23 -0.64 -18.88 16 13 C -0.43 -5.18 5.65 36.01 0.20 -4.98 16 14 C -0.05 -0.62 5.14 -104.58 -0.54 -1.15 16 15 C -0.07 -0.84 9.70 -39.60 -0.38 -1.23 16 16 C -0.14 -1.47 10.03 -39.51 -0.40 -1.86 16 17 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 18 F -0.13 -1.43 17.27 2.25 0.04 -1.39 16 19 C -0.14 -1.40 9.81 -39.48 -0.39 -1.78 16 20 C -0.01 -0.11 6.31 -39.51 -0.25 -0.36 16 21 Cl -0.05 -0.44 27.29 -51.86 -1.42 -1.85 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.11 1.75 8.14 -51.92 -0.42 1.33 16 26 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 27 H 0.13 1.30 6.90 -51.92 -0.36 0.94 16 28 H 0.10 1.19 8.08 -51.92 -0.42 0.77 16 29 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -33.95 307.11 -8.73 -42.68 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -3.28 Total: -3.00 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: -2.37 Total: -30.77 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.64 Total: -18.88 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 19.52 SS G_CDS: -1.41 Total: 18.11 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.42 Total: -1.85 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.95 -8.73 -42.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190725985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.211 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds