Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.47078 * 296.39075 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.38237 * 119.98326 * 269.73328 * 14 13 11 16 16 C 1.38188 * 120.03658 * 179.72454 * 15 14 13 17 17 C 1.38486 * 120.00065 * 0.54487 * 16 15 14 18 18 F 1.35102 * 120.01928 * 179.75000 * 17 16 15 19 19 C 1.38414 * 119.96087 * 359.72378 * 17 16 15 20 20 C 1.38335 * 119.96119 * 0.02562 * 19 17 16 21 21 Cl 1.73603 * 119.99870 * 179.97438 * 20 19 17 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 28 28 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 29 29 H 1.08005 * 119.98368 * 359.97438 * 15 14 13 30 30 H 1.08003 * 120.00194 * 180.27405 * 16 15 14 31 31 H 1.08005 * 120.02106 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2331 0.0002 12 8 0.5864 -5.3452 1.2007 13 6 2.6651 -6.4701 -0.0007 14 6 2.0636 -7.8519 0.0005 15 6 1.7942 -8.4871 1.1984 16 6 1.2374 -9.7518 1.2008 17 6 0.9594 -10.3882 0.0027 18 9 0.4196 -11.6268 0.0046 19 6 1.2343 -9.7545 -1.1968 20 6 1.7869 -8.4863 -1.1973 21 17 2.1327 -7.6908 -2.7011 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 3.2807 -6.3422 -0.8910 28 1 3.2820 -6.3421 0.8890 29 1 2.0153 -7.9930 2.1330 30 1 1.0231 -10.2457 2.1370 31 1 1.0174 -10.2498 -2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190725985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -99.201591 kcal Electronic energy + Delta-G solvation = -17655.452062 eV Core-core repulsion = 14388.613836 eV Total energy + Delta-G solvation = -3266.838226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.01053 -40.37863 -37.48867 -36.77422 -35.73216 -33.69236 -32.87968 -32.04989 -28.11165 -27.20634 -24.26255 -23.46423 -22.55829 -18.94709 -18.79029 -18.34947 -17.82369 -16.93893 -16.78440 -16.52878 -16.26696 -15.83821 -15.78797 -15.17427 -14.91611 -14.85998 -14.43693 -14.15951 -13.92173 -13.43856 -13.21428 -12.97485 -12.76159 -12.62647 -12.42816 -12.30805 -12.00273 -11.94538 -11.89861 -11.53541 -11.01127 -10.58836 -10.08019 -9.72724 -9.05124 -8.21026 -6.34571 -0.28551 -0.05009 0.68699 0.97792 1.40554 1.43607 1.51769 1.75467 2.34800 2.40545 2.82631 3.11110 3.11769 3.46990 3.58724 3.83443 3.98745 4.27076 4.31151 4.35449 4.46758 4.62534 4.79986 4.86860 4.98505 5.01187 5.16391 5.41829 5.50188 5.60600 5.76624 6.17024 6.80154 7.34941 8.89847 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.034061 B = 0.003428 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.865684 B = 8167.210426 C = 8574.086212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.417 4.417 11 S 1.260 4.740 12 O -0.904 6.904 13 C -0.408 4.408 14 C -0.072 4.072 15 C -0.086 4.086 16 C -0.143 4.143 17 C 0.100 3.900 18 F -0.135 7.135 19 C -0.138 4.138 20 C -0.011 4.011 21 Cl -0.034 7.034 22 H 0.265 0.735 23 H 0.023 0.977 24 H -0.024 1.024 25 H 0.141 0.859 26 H 0.066 0.934 27 H 0.159 0.841 28 H 0.106 0.894 29 H 0.140 0.860 30 H 0.160 0.840 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -21.331 -5.937 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.003 4.003 10 C -0.555 4.555 11 S 1.464 4.536 12 O -0.900 6.900 13 C -0.543 4.543 14 C -0.074 4.074 15 C -0.105 4.105 16 C -0.161 4.161 17 C 0.080 3.920 18 F -0.114 7.114 19 C -0.157 4.157 20 C -0.039 4.039 21 Cl -0.005 7.005 22 H 0.074 0.926 23 H 0.041 0.959 24 H -0.005 1.005 25 H 0.159 0.841 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.125 0.875 29 H 0.157 0.843 30 H 0.178 0.822 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.922 -21.329 -6.049 22.710 hybrid contribution 1.305 1.117 2.063 2.684 sum 6.226 -20.212 -3.987 21.522 Atomic orbital electron populations 1.70094 1.07893 1.28094 1.51192 1.26046 0.95818 1.03555 0.94586 0.85454 0.78234 0.77795 0.79301 1.18246 1.20881 1.19742 1.21623 0.93735 0.91705 1.51122 0.91535 1.18652 0.93669 0.92343 0.95625 1.27524 1.08605 1.11977 1.07382 1.70110 0.87275 0.85747 1.10497 1.92991 1.59321 1.84814 1.52863 1.26719 1.13790 1.03206 1.10613 1.19146 1.00838 0.95038 0.92371 1.21068 0.97230 0.94244 0.97966 1.21425 1.00526 0.95643 0.98536 1.17548 0.98928 0.81246 0.94262 1.91525 1.83489 1.38966 1.97371 1.21161 1.01241 0.94135 0.99149 1.20498 1.02067 0.93817 0.87531 1.98401 1.93220 1.79308 1.29583 0.92575 0.95884 1.00520 0.84136 0.91546 0.82338 0.87534 0.84256 0.82193 0.81166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.04 1.86 4.98 29.85 0.15 2.00 16 10 C -0.42 -15.87 5.86 71.98 0.42 -15.45 16 11 S 1.26 39.96 13.14 -56.49 -0.74 39.22 16 12 O -0.90 -40.32 18.14 -148.98 -2.70 -43.02 16 13 C -0.41 -9.11 5.65 71.24 0.40 -8.71 16 14 C -0.07 -1.58 5.14 -19.84 -0.10 -1.68 16 15 C -0.09 -1.88 9.70 22.26 0.22 -1.67 16 16 C -0.14 -2.71 10.03 22.32 0.22 -2.49 16 17 C 0.10 1.89 7.30 22.37 0.16 2.05 16 18 F -0.13 -2.59 17.27 44.97 0.78 -1.81 16 19 C -0.14 -2.37 9.81 22.33 0.22 -2.16 16 20 C -0.01 -0.21 6.31 22.32 0.14 -0.07 16 21 Cl -0.03 -0.58 27.29 -2.72 -0.07 -0.65 16 22 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 23 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 24 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 25 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 26 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.16 2.66 6.90 -2.39 -0.02 2.64 16 28 H 0.11 2.33 8.08 -2.39 -0.02 2.31 16 29 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 30 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -75.02 307.11 3.24 -71.77 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.14 Total: 3.59 kcal Atomic # 6 Polarization: -60.71 SS G_CDS: 2.53 Total: -58.18 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -2.70 Total: -43.02 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 39.96 SS G_CDS: -0.74 Total: 39.22 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.07 Total: -0.65 kcal Total: -75.02 3.24 -71.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190725985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.428 kcal (2) G-P(sol) polarization free energy of solvation -75.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds