Wall clock time and date at job start Tue Mar 31 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48494 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47119 * 300.00322 * 3 2 1 6 6 H 1.48504 * 109.46685 * 60.00158 * 3 2 1 7 7 C 1.37880 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46982 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46817 * 180.02562 * 10 9 7 12 12 O 1.42096 * 109.47106 * 63.61528 * 11 10 9 13 13 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 14 14 C 1.50702 * 109.47410 * 180.02562 * 13 11 10 15 15 C 1.38239 * 119.97876 * 269.72855 * 14 13 11 16 16 C 1.38186 * 120.03785 * 179.72090 * 15 14 13 17 17 C 1.38489 * 119.99748 * 0.55119 * 16 15 14 18 18 F 1.35108 * 120.02025 * 179.74801 * 17 16 15 19 19 C 1.38417 * 119.96305 * 359.71940 * 17 16 15 20 20 C 1.38334 * 119.95887 * 0.02562 * 19 17 16 21 21 Cl 1.73601 * 119.99756 * 179.97438 * 20 19 17 22 22 H 0.97000 * 120.00579 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47366 * 60.00351 * 9 7 2 24 24 H 1.09007 * 109.47600 * 300.00400 * 9 7 2 25 25 H 1.09000 * 109.46988 * 60.00435 * 10 9 7 26 26 H 1.08998 * 109.46864 * 300.00029 * 10 9 7 27 27 H 1.09004 * 109.47089 * 299.99939 * 13 11 10 28 28 H 1.09004 * 109.47568 * 59.99949 * 13 11 10 29 29 H 1.08004 * 119.98389 * 359.97438 * 15 14 13 30 30 H 1.07997 * 120.00676 * 180.27123 * 16 15 14 31 31 H 1.08001 * 120.02154 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2330 -0.0013 12 8 0.5862 -5.3452 -1.2017 13 6 2.6649 -6.4702 -0.0004 14 6 2.0634 -7.8519 -0.0016 15 6 1.7917 -8.4880 1.1953 16 6 1.2348 -9.7527 1.1957 17 6 0.9591 -10.3882 -0.0035 18 9 0.4193 -11.6268 -0.0036 19 6 1.2364 -9.7536 -1.2019 20 6 1.7890 -8.4854 -1.2004 21 17 2.1378 -7.6888 -2.7029 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 3.2818 -6.3421 -0.8900 28 1 3.2805 -6.3423 0.8900 29 1 2.0109 -7.9946 2.1307 30 1 1.0186 -10.2473 2.1311 31 1 1.0215 -10.2482 -2.1377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190726000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:39 Heat of formation + Delta-G solvation = -76.823162 kcal Electronic energy + Delta-G solvation = -17705.909010 eV Core-core repulsion = 14440.041186 eV Total energy + Delta-G solvation = -3265.867825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.16423 -39.49200 -36.52528 -35.12651 -33.69056 -32.73477 -31.19429 -30.90055 -27.02512 -25.26856 -23.39496 -22.12913 -21.04060 -18.06860 -17.10840 -16.94297 -16.51689 -15.96384 -15.87381 -14.91602 -14.89240 -14.53008 -14.42107 -14.07783 -13.80406 -13.62957 -13.10034 -12.66567 -12.40855 -12.17233 -11.77970 -11.53090 -11.46186 -11.23114 -10.99950 -10.96392 -10.73494 -10.17471 -10.14983 -9.60503 -9.30993 -9.17137 -8.55880 -8.43461 -7.68603 -6.06206 -4.10422 0.67555 0.79926 1.95789 1.99827 3.09897 3.24716 3.27340 3.35088 3.38573 3.96435 4.18393 4.40721 4.43834 4.51098 4.61832 4.88560 5.18064 5.26919 5.28982 5.53364 5.64190 5.80342 5.84333 5.93380 6.03989 6.12191 6.45477 6.78572 7.47564 7.59335 7.89012 8.30210 8.94586 9.53913 11.04381 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.035818 B = 0.003415 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.531962 B = 8197.963218 C = 8501.998254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.416 4.416 11 S 1.223 4.777 12 O -0.829 6.829 13 C -0.430 4.430 14 C -0.054 4.054 15 C -0.078 4.078 16 C -0.145 4.145 17 C 0.102 3.898 18 F -0.136 7.136 19 C -0.144 4.144 20 C -0.007 4.007 21 Cl -0.043 7.043 22 H 0.262 0.738 23 H 0.023 0.977 24 H 0.028 0.972 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -20.356 4.918 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.556 4.556 11 S 1.423 4.577 12 O -0.824 6.824 13 C -0.561 4.561 14 C -0.056 4.056 15 C -0.097 4.097 16 C -0.164 4.164 17 C 0.082 3.918 18 F -0.114 7.114 19 C -0.164 4.164 20 C -0.035 4.035 21 Cl -0.014 7.014 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.147 0.853 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.222 -20.396 4.742 21.186 hybrid contribution 1.779 1.028 -2.057 2.907 sum 5.000 -19.368 2.685 20.183 Atomic orbital electron populations 1.69964 1.06044 1.26773 1.50314 1.25046 0.94907 0.99348 0.95171 0.86496 0.80018 0.83576 0.77689 1.19744 1.20979 1.20815 1.21185 0.93046 0.90409 1.51180 0.92437 1.18791 0.92966 0.90142 0.98122 1.27620 1.09615 1.12327 1.06028 1.70699 0.87073 0.86951 1.13017 1.93141 1.55376 1.83573 1.50343 1.27021 1.15701 1.04740 1.08685 1.19166 0.99524 0.95246 0.91631 1.20939 0.97333 0.93729 0.97711 1.21229 1.01656 0.96246 0.97295 1.17445 0.99174 0.81234 0.93994 1.91518 1.83532 1.39018 1.97365 1.20934 1.02336 0.94633 0.98466 1.20601 1.01488 0.93253 0.88177 1.98414 1.92974 1.79341 1.30676 0.92821 0.95832 0.95381 0.87674 0.90831 0.88162 0.85292 0.83043 0.83824 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 10 C -0.42 -7.82 5.86 37.16 0.22 -7.60 16 11 S 1.22 18.57 13.14 -107.50 -1.41 17.15 16 12 O -0.83 -17.52 17.71 -35.23 -0.62 -18.15 16 13 C -0.43 -5.03 5.66 36.01 0.20 -4.83 16 14 C -0.05 -0.62 5.14 -104.58 -0.54 -1.16 16 15 C -0.08 -0.67 9.70 -39.60 -0.38 -1.05 16 16 C -0.15 -1.25 10.03 -39.51 -0.40 -1.64 16 17 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 18 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 19 C -0.14 -1.66 9.81 -39.48 -0.39 -2.05 16 20 C -0.01 -0.09 6.31 -39.51 -0.25 -0.34 16 21 Cl -0.04 -0.64 26.86 -51.86 -1.39 -2.04 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 26 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 27 H 0.10 1.32 6.90 -51.92 -0.36 0.96 16 28 H 0.13 1.03 8.08 -51.92 -0.42 0.61 16 29 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -35.13 306.26 -8.71 -43.84 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -3.28 Total: -4.24 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.37 Total: -30.28 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.62 Total: -18.15 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 18.57 SS G_CDS: -1.41 Total: 17.15 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.39 Total: -2.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.13 -8.71 -43.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190726000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.985 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds