Wall clock time and date at job start Tue Mar 31 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48494 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47119 * 300.00322 * 3 2 1 6 6 H 1.48504 * 109.46685 * 60.00158 * 3 2 1 7 7 C 1.37880 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46982 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46817 * 180.02562 * 10 9 7 12 12 O 1.42096 * 109.47106 * 63.61528 * 11 10 9 13 13 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 14 14 C 1.50702 * 109.47410 * 180.02562 * 13 11 10 15 15 C 1.38239 * 119.97876 * 269.72855 * 14 13 11 16 16 C 1.38186 * 120.03785 * 179.72090 * 15 14 13 17 17 C 1.38489 * 119.99748 * 0.55119 * 16 15 14 18 18 F 1.35108 * 120.02025 * 179.74801 * 17 16 15 19 19 C 1.38417 * 119.96305 * 359.71940 * 17 16 15 20 20 C 1.38334 * 119.95887 * 0.02562 * 19 17 16 21 21 Cl 1.73601 * 119.99756 * 179.97438 * 20 19 17 22 22 H 0.97000 * 120.00579 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47366 * 60.00351 * 9 7 2 24 24 H 1.09007 * 109.47600 * 300.00400 * 9 7 2 25 25 H 1.09000 * 109.46988 * 60.00435 * 10 9 7 26 26 H 1.08998 * 109.46864 * 300.00029 * 10 9 7 27 27 H 1.09004 * 109.47089 * 299.99939 * 13 11 10 28 28 H 1.09004 * 109.47568 * 59.99949 * 13 11 10 29 29 H 1.08004 * 119.98389 * 359.97438 * 15 14 13 30 30 H 1.07997 * 120.00676 * 180.27123 * 16 15 14 31 31 H 1.08001 * 120.02154 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2330 -0.0013 12 8 0.5862 -5.3452 -1.2017 13 6 2.6649 -6.4702 -0.0004 14 6 2.0634 -7.8519 -0.0016 15 6 1.7917 -8.4880 1.1953 16 6 1.2348 -9.7527 1.1957 17 6 0.9591 -10.3882 -0.0035 18 9 0.4193 -11.6268 -0.0036 19 6 1.2364 -9.7536 -1.2019 20 6 1.7890 -8.4854 -1.2004 21 17 2.1378 -7.6888 -2.7029 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 3.2818 -6.3421 -0.8900 28 1 3.2805 -6.3423 0.8900 29 1 2.0109 -7.9946 2.1307 30 1 1.0186 -10.2473 2.1311 31 1 1.0215 -10.2482 -2.1377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190726000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:39 Heat of formation + Delta-G solvation = -99.939847 kcal Electronic energy + Delta-G solvation = -17706.911425 eV Core-core repulsion = 14440.041186 eV Total energy + Delta-G solvation = -3266.870239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.98175 -40.30945 -37.52984 -36.61596 -35.70547 -33.61433 -32.83937 -31.97460 -28.02248 -27.16730 -24.18070 -23.40924 -22.49164 -18.89437 -18.74438 -18.20043 -17.79597 -16.85792 -16.74751 -16.50301 -16.18141 -15.83063 -15.70603 -15.10953 -14.90067 -14.69659 -14.37578 -14.05819 -13.88800 -13.37112 -13.12670 -12.96336 -12.78102 -12.57892 -12.39065 -12.22757 -12.02251 -11.95966 -11.85223 -11.47385 -10.92679 -10.59131 -10.02358 -9.65951 -8.97279 -8.20443 -6.33367 -0.20892 0.01952 0.81968 1.00539 1.39998 1.41032 1.53746 1.87349 2.40696 2.43261 2.98431 3.11899 3.17308 3.59893 3.64081 3.92398 4.10019 4.32287 4.34095 4.44997 4.53517 4.80560 4.89541 4.97676 5.06438 5.11215 5.25288 5.45441 5.54813 5.71842 5.79223 6.19603 6.82240 7.36100 8.90536 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.035818 B = 0.003415 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.531962 B = 8197.963218 C = 8501.998254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.036 3.964 10 C -0.420 4.420 11 S 1.276 4.724 12 O -0.896 6.896 13 C -0.413 4.413 14 C -0.074 4.074 15 C -0.061 4.061 16 C -0.134 4.134 17 C 0.095 3.905 18 F -0.139 7.139 19 C -0.159 4.159 20 C -0.030 4.030 21 Cl -0.075 7.075 22 H 0.265 0.735 23 H -0.026 1.026 24 H 0.025 0.975 25 H 0.142 0.858 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.200 0.800 30 H 0.180 0.820 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -21.280 7.733 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.002 4.002 10 C -0.557 4.557 11 S 1.478 4.522 12 O -0.892 6.892 13 C -0.549 4.549 14 C -0.076 4.076 15 C -0.080 4.080 16 C -0.152 4.152 17 C 0.075 3.925 18 F -0.117 7.117 19 C -0.178 4.178 20 C -0.059 4.059 21 Cl -0.046 7.046 22 H 0.074 0.926 23 H -0.008 1.008 24 H 0.043 0.957 25 H 0.160 0.840 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.199 0.801 29 H 0.217 0.783 30 H 0.197 0.803 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.878 -21.280 7.556 23.102 hybrid contribution 1.271 1.084 -2.878 3.327 sum 6.149 -20.196 4.678 21.623 Atomic orbital electron populations 1.70100 1.07841 1.27881 1.51472 1.26028 0.95803 1.03491 0.94721 0.85378 0.79105 0.78645 0.77797 1.18398 1.21137 1.19623 1.21695 0.93661 0.91869 1.50663 0.91755 1.18644 0.93680 0.92354 0.95554 1.27567 1.08559 1.12631 1.06976 1.69810 0.86626 0.85122 1.10597 1.93039 1.59202 1.84379 1.52565 1.26846 1.14106 1.03189 1.10731 1.19351 1.00740 0.95251 0.92259 1.21488 0.94993 0.93365 0.98134 1.21680 0.99752 0.96039 0.97751 1.17672 0.99148 0.81212 0.94454 1.91515 1.83587 1.39229 1.97392 1.21008 1.02859 0.94525 0.99411 1.20850 1.03290 0.94064 0.87648 1.98399 1.93323 1.79950 1.32884 0.92643 1.00782 0.95668 0.84004 0.92486 0.89499 0.80123 0.78299 0.80275 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.04 1.86 4.98 29.85 0.15 2.01 16 10 C -0.42 -15.55 5.86 71.98 0.42 -15.13 16 11 S 1.28 37.56 13.14 -56.49 -0.74 36.82 16 12 O -0.90 -39.06 17.71 -148.98 -2.64 -41.70 16 13 C -0.41 -8.45 5.66 71.24 0.40 -8.04 16 14 C -0.07 -1.50 5.14 -19.84 -0.10 -1.60 16 15 C -0.06 -0.74 9.70 22.26 0.22 -0.53 16 16 C -0.13 -1.70 10.03 22.32 0.22 -1.47 16 17 C 0.10 1.78 7.30 22.37 0.16 1.95 16 18 F -0.14 -2.71 17.27 44.97 0.78 -1.94 16 19 C -0.16 -3.55 9.81 22.34 0.22 -3.33 16 20 C -0.03 -0.78 6.31 22.32 0.14 -0.64 16 21 Cl -0.07 -2.29 26.86 -2.72 -0.07 -2.36 16 22 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 23 H -0.03 -1.60 8.14 -2.38 -0.02 -1.62 16 24 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.09 2.14 6.90 -2.39 -0.02 2.12 16 28 H 0.18 1.82 8.08 -2.39 -0.02 1.80 16 29 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 30 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 31 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -81.33 306.26 3.31 -78.02 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: 1.14 Total: -1.56 kcal Atomic # 6 Polarization: -59.12 SS G_CDS: 2.53 Total: -56.59 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.28 Total: -56.58 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -2.64 Total: -41.70 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 37.56 SS G_CDS: -0.74 Total: 36.82 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.07 Total: -2.36 kcal Total: -81.33 3.31 -78.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190726000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.920 kcal (2) G-P(sol) polarization free energy of solvation -81.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds