Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48494 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46930 * 300.00026 * 3 2 1 6 6 H 1.48501 * 109.46912 * 60.00271 * 3 2 1 7 7 C 1.38797 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99922 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00075 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00251 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47554 * 179.97438 * 10 9 7 12 12 O 1.20837 * 119.99963 * 359.97438 * 11 10 9 13 13 O 1.34261 * 120.00395 * 180.02562 * 11 10 9 14 14 C 1.35944 * 117.00204 * 185.50811 * 13 11 10 15 15 C 1.38678 * 120.04977 * 261.65548 * 14 13 11 16 16 C 1.38352 * 119.93542 * 180.29869 * 15 14 13 17 17 F 1.35098 * 119.99023 * 179.97438 * 16 15 14 18 18 C 1.38508 * 120.02755 * 359.97438 * 16 15 14 19 19 C 1.38224 * 120.09021 * 0.02562 * 18 16 15 20 20 C 1.38256 * 120.06782 * 0.02562 * 19 18 16 21 21 Cl 1.73596 * 120.01408 * 179.97438 * 20 19 18 22 22 H 0.96999 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47266 * 59.99767 * 10 9 7 24 24 H 1.09004 * 109.47091 * 299.99861 * 10 9 7 25 25 H 1.08003 * 120.03548 * 0.27990 * 15 14 13 26 26 H 1.08000 * 119.95809 * 179.97438 * 18 16 15 27 27 H 1.08002 * 119.96230 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7956 -5.5016 0.0021 13 8 2.8409 -6.3391 0.0018 14 6 2.3026 -7.5820 -0.1139 15 6 2.0989 -8.3586 1.0168 16 6 1.5565 -9.6256 0.8957 17 9 1.3581 -10.3833 1.9965 18 6 1.2170 -10.1177 -0.3537 19 6 1.4195 -9.3446 -1.4815 20 6 1.9622 -8.0783 -1.3650 21 17 2.2166 -7.1089 -2.7824 22 1 -0.4850 0.8401 0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1245 -3.7314 -0.8895 25 1 2.3636 -7.9748 1.9911 26 1 0.7941 -11.1071 -0.4470 27 1 1.1536 -9.7302 -2.4546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194307248.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -100.802262 kcal Electronic energy + Delta-G solvation = -17528.675199 eV Core-core repulsion = 14125.934468 eV Total energy + Delta-G solvation = -3402.740731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.997 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.25774 -41.27778 -38.80269 -36.69071 -36.56680 -32.53209 -31.34683 -30.55475 -29.37478 -25.62903 -23.94066 -23.29452 -21.30629 -18.58036 -18.00680 -17.52550 -17.07705 -16.78167 -16.14970 -15.82910 -15.52553 -14.88821 -14.47952 -14.23860 -13.94450 -13.62748 -13.20985 -13.01904 -12.75916 -12.43149 -11.98499 -11.49713 -11.40036 -11.14020 -11.12746 -10.92760 -10.87216 -10.37101 -9.96321 -9.39657 -9.16804 -8.84829 -8.43227 -6.66902 -6.32107 -4.05613 0.47378 0.63892 1.83318 2.34500 2.44146 3.04911 3.17144 3.22568 3.26964 3.40654 3.86822 4.09688 4.27903 4.46819 4.55790 4.79938 5.04129 5.22959 5.30481 5.50265 5.53189 5.62272 5.64202 5.70291 5.96723 6.18971 6.53886 7.51415 7.96005 8.25935 9.13646 10.75407 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003745 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.493709 B = 7474.155137 C = 7952.077165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.078 0.922 9 S -0.053 6.053 10 C -0.126 4.126 11 C 0.479 3.521 12 O -0.462 6.462 13 O -0.293 6.293 14 C 0.134 3.866 15 C -0.145 4.145 16 C 0.119 3.881 17 F -0.130 7.130 18 C -0.143 4.143 19 C -0.069 4.069 20 C -0.056 4.056 21 Cl -0.039 7.039 22 H 0.270 0.730 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.154 0.846 26 H 0.150 0.850 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -19.016 -1.809 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.096 0.904 9 S 0.173 5.827 10 C -0.274 4.274 11 C 0.321 3.679 12 O -0.344 6.344 13 O -0.210 6.210 14 C 0.091 3.909 15 C -0.164 4.164 16 C 0.099 3.901 17 F -0.108 7.108 18 C -0.162 4.162 19 C -0.088 4.088 20 C -0.084 4.084 21 Cl -0.010 7.010 22 H 0.079 0.921 23 H 0.125 0.875 24 H 0.126 0.874 25 H 0.171 0.829 26 H 0.168 0.832 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.753 -19.102 -1.877 19.557 hybrid contribution 1.835 1.163 0.103 2.175 sum 5.588 -17.939 -1.774 18.873 Atomic orbital electron populations 1.70016 1.05995 1.27629 1.46510 1.25013 0.95081 0.99159 0.94261 0.86056 0.79617 0.81508 0.77981 1.19458 1.20469 1.20471 1.22874 0.95093 0.90975 1.59500 0.90405 1.85479 1.03780 0.96533 1.96913 1.23348 1.07471 0.89602 1.06935 1.23869 0.85259 0.86427 0.72353 1.90719 1.16364 1.84744 1.42532 1.84709 1.39776 1.12116 1.84394 1.17895 0.97035 0.85171 0.90787 1.21141 1.01730 0.93892 0.99684 1.17366 1.00044 0.89435 0.83222 1.91543 1.92746 1.74834 1.51682 1.21157 1.02879 1.01829 0.90300 1.20815 0.96849 0.91242 0.99845 1.21322 1.03949 0.94669 0.88467 1.98418 1.94981 1.70372 1.37252 0.92051 0.87460 0.87401 0.82854 0.83229 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.40 13.22 55.49 0.73 -24.67 15 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 15 3 Si 0.92 20.88 29.55 -169.99 -5.02 15.86 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.54 -14.75 9.50 30.94 0.29 -14.46 15 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 15 9 S -0.05 -1.39 20.57 -107.50 -2.21 -3.60 15 10 C -0.13 -2.49 6.27 36.00 0.23 -2.27 15 11 C 0.48 9.04 7.48 36.00 0.27 9.31 15 12 O -0.46 -9.96 15.61 -18.76 -0.29 -10.25 15 13 O -0.29 -4.71 9.56 -23.67 -0.23 -4.93 15 14 C 0.13 1.93 4.94 -39.20 -0.19 1.74 15 15 C -0.15 -1.80 9.96 -39.38 -0.39 -2.20 15 16 C 0.12 1.30 7.30 -39.44 -0.29 1.01 15 17 F -0.13 -1.41 17.27 2.25 0.04 -1.37 15 18 C -0.14 -1.29 10.02 -39.49 -0.40 -1.68 15 19 C -0.07 -0.67 9.82 -39.58 -0.39 -1.06 15 20 C -0.06 -0.74 6.31 -39.36 -0.25 -0.99 15 21 Cl -0.04 -0.54 28.14 -51.86 -1.46 -2.00 15 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.11 1.93 8.14 -51.92 -0.42 1.51 15 24 H 0.11 1.98 8.14 -51.91 -0.42 1.55 15 25 H 0.15 1.71 8.06 -52.48 -0.42 1.29 15 26 H 0.15 0.89 8.06 -52.49 -0.42 0.47 15 27 H 0.15 1.06 8.06 -52.49 -0.42 0.63 15 LS Contribution 288.91 15.07 4.35 4.35 Total: -1.00 -31.40 288.91 -6.96 -38.36 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -1.66 Total: -3.11 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.21 Total: -8.63 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.73 Total: -24.67 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.52 Total: -15.18 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.60 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.46 Total: -2.00 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.40 -6.96 -38.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194307248.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.439 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds