Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48494 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46930 * 300.00026 * 3 2 1 6 6 H 1.48501 * 109.46912 * 60.00271 * 3 2 1 7 7 C 1.38797 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99922 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00075 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00251 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47554 * 179.97438 * 10 9 7 12 12 O 1.20837 * 119.99963 * 359.97438 * 11 10 9 13 13 O 1.34261 * 120.00395 * 180.02562 * 11 10 9 14 14 C 1.35944 * 117.00204 * 185.50811 * 13 11 10 15 15 C 1.38678 * 120.04977 * 261.65548 * 14 13 11 16 16 C 1.38352 * 119.93542 * 180.29869 * 15 14 13 17 17 F 1.35098 * 119.99023 * 179.97438 * 16 15 14 18 18 C 1.38508 * 120.02755 * 359.97438 * 16 15 14 19 19 C 1.38224 * 120.09021 * 0.02562 * 18 16 15 20 20 C 1.38256 * 120.06782 * 0.02562 * 19 18 16 21 21 Cl 1.73596 * 120.01408 * 179.97438 * 20 19 18 22 22 H 0.96999 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47266 * 59.99767 * 10 9 7 24 24 H 1.09004 * 109.47091 * 299.99861 * 10 9 7 25 25 H 1.08003 * 120.03548 * 0.27990 * 15 14 13 26 26 H 1.08000 * 119.95809 * 179.97438 * 18 16 15 27 27 H 1.08002 * 119.96230 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7956 -5.5016 0.0021 13 8 2.8409 -6.3391 0.0018 14 6 2.3026 -7.5820 -0.1139 15 6 2.0989 -8.3586 1.0168 16 6 1.5565 -9.6256 0.8957 17 9 1.3581 -10.3833 1.9965 18 6 1.2170 -10.1177 -0.3537 19 6 1.4195 -9.3446 -1.4815 20 6 1.9622 -8.0783 -1.3650 21 17 2.2166 -7.1089 -2.7824 22 1 -0.4850 0.8401 0.0004 23 1 3.1245 -3.7313 0.8905 24 1 3.1245 -3.7314 -0.8895 25 1 2.3636 -7.9748 1.9911 26 1 0.7941 -11.1071 -0.4470 27 1 1.1536 -9.7302 -2.4546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194307248.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -117.992721 kcal Electronic energy + Delta-G solvation = -17529.420634 eV Core-core repulsion = 14125.934468 eV Total energy + Delta-G solvation = -3403.486165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.997 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.11752 -42.54593 -39.88836 -37.98558 -37.61114 -34.62135 -32.40544 -31.65984 -30.64176 -27.73288 -25.04493 -24.22397 -22.51996 -20.06088 -19.66084 -18.57415 -18.25272 -17.86414 -17.30564 -16.90487 -16.81595 -16.76322 -16.15015 -15.27122 -14.97834 -14.90344 -14.61173 -14.21161 -14.16507 -13.77200 -13.20601 -12.93516 -12.90790 -12.68433 -12.61884 -12.44686 -12.01130 -11.87912 -11.78813 -11.18538 -10.42402 -10.30525 -9.79114 -8.75483 -8.38810 -6.18563 -0.49625 -0.24575 0.82188 0.89671 1.00343 1.40335 1.41853 1.55429 1.73047 2.20857 2.23830 2.93842 2.96736 3.21866 3.38338 3.52249 3.73629 3.93997 4.10334 4.22103 4.37589 4.48373 4.68648 4.78211 4.85546 5.07442 5.41063 5.47584 6.17538 6.54809 7.03420 8.70573 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003745 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.493709 B = 7474.155137 C = 7952.077165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.016 3.984 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.087 0.913 9 S -0.129 6.129 10 C -0.107 4.107 11 C 0.488 3.512 12 O -0.494 6.494 13 O -0.284 6.284 14 C 0.095 3.905 15 C -0.152 4.152 16 C 0.115 3.885 17 F -0.129 7.129 18 C -0.120 4.120 19 C -0.061 4.061 20 C -0.069 4.069 21 Cl -0.053 7.053 22 H 0.273 0.727 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.158 0.842 26 H 0.190 0.810 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 -20.332 -2.075 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.105 0.895 9 S 0.098 5.902 10 C -0.255 4.255 11 C 0.331 3.669 12 O -0.379 6.379 13 O -0.200 6.200 14 C 0.052 3.948 15 C -0.171 4.171 16 C 0.095 3.905 17 F -0.107 7.107 18 C -0.138 4.138 19 C -0.080 4.080 20 C -0.097 4.097 21 Cl -0.024 7.024 22 H 0.082 0.918 23 H 0.146 0.854 24 H 0.143 0.857 25 H 0.175 0.825 26 H 0.207 0.793 27 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.859 -20.444 -2.141 21.123 hybrid contribution 1.509 1.329 0.203 2.021 sum 6.368 -19.115 -1.938 20.241 Atomic orbital electron populations 1.70164 1.07902 1.28759 1.47743 1.26108 0.95981 1.03249 0.93555 0.84892 0.78656 0.76246 0.78097 1.18004 1.19934 1.19904 1.23223 0.95577 0.91423 1.59233 0.89454 1.85566 1.08570 0.98890 1.97178 1.23130 1.04781 0.88881 1.08747 1.23538 0.84880 0.86844 0.71609 1.90701 1.17707 1.85323 1.44164 1.84668 1.38857 1.12590 1.83850 1.18190 1.00000 0.84437 0.92125 1.21247 1.01819 0.94645 0.99417 1.17491 0.99973 0.88974 0.84049 1.91551 1.92700 1.74610 1.51850 1.21606 1.00421 1.02944 0.88852 1.21228 0.95273 0.89791 1.01684 1.21591 1.04714 0.95833 0.87550 1.98410 1.95125 1.71044 1.37774 0.91829 0.85386 0.85696 0.82474 0.79278 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.29 13.22 21.65 0.29 -54.01 15 2 C 0.02 0.90 5.49 84.86 0.47 1.37 15 3 Si 1.00 42.57 29.55 68.60 2.03 44.60 15 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 7 C -0.55 -30.20 9.50 67.95 0.65 -29.56 15 8 H 0.09 4.48 7.80 -2.91 -0.02 4.46 15 9 S -0.13 -6.88 20.57 -56.49 -1.16 -8.04 15 10 C -0.11 -4.23 6.27 71.23 0.45 -3.78 15 11 C 0.49 18.49 7.48 71.23 0.53 19.02 15 12 O -0.49 -21.72 15.61 21.93 0.34 -21.38 15 13 O -0.28 -9.04 9.56 4.35 0.04 -9.00 15 14 C 0.10 2.68 4.94 22.52 0.11 2.79 15 15 C -0.15 -3.64 9.96 22.40 0.22 -3.41 15 16 C 0.11 2.24 7.30 22.36 0.16 2.41 15 17 F -0.13 -2.52 17.27 44.97 0.78 -1.74 15 18 C -0.12 -1.72 10.02 22.33 0.22 -1.50 15 19 C -0.06 -1.02 9.82 22.27 0.22 -0.80 15 20 C -0.07 -1.72 6.31 22.42 0.14 -1.58 15 21 Cl -0.05 -1.41 28.14 -2.72 -0.08 -1.48 15 22 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 23 H 0.13 4.50 8.14 -2.40 -0.02 4.48 15 24 H 0.13 4.50 8.14 -2.39 -0.02 4.48 15 25 H 0.16 3.47 8.06 -2.91 -0.02 3.44 15 26 H 0.19 1.25 8.06 -2.91 -0.02 1.23 15 27 H 0.18 1.83 8.06 -2.91 -0.02 1.81 15 Total: -1.00 -69.34 288.91 6.63 -62.71 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.22 Total: 3.41 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.17 Total: -15.06 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.29 Total: -54.01 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: 0.38 Total: -30.38 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.16 Total: -8.04 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.48 kcal Total: -69.34 6.63 -62.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194307248.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.281 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds