Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 C 1.53008 * 109.46707 * 119.99988 * 2 1 3 5 5 N 1.46900 * 109.46657 * 182.06662 * 4 2 1 6 6 C 1.46901 * 110.99603 * 158.89766 * 5 4 2 7 7 C 1.50698 * 109.47262 * 288.10690 * 6 5 4 8 8 H 1.08004 * 119.99790 * 4.85146 * 7 6 5 9 9 C 1.37878 * 120.00405 * 184.84523 * 7 6 5 10 10 N 1.31520 * 119.99475 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00030 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47296 * 90.00327 * 11 9 7 13 13 H 1.48502 * 109.46708 * 209.99758 * 11 9 7 14 14 H 1.48495 * 109.47540 * 329.99673 * 11 9 7 15 15 C 1.46897 * 110.99866 * 282.84654 * 5 4 2 16 16 C 1.52998 * 109.47329 * 91.54528 * 15 5 4 17 17 C 1.52998 * 109.47870 * 184.62610 * 16 15 5 18 18 C 1.52992 * 109.47553 * 179.97438 * 17 16 15 19 19 C 1.50694 * 109.47398 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.00485 * 89.99877 * 19 18 17 21 21 C 1.38233 * 120.00195 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.99977 * 359.97293 * 21 20 19 23 23 C 1.38230 * 120.00076 * 0.28142 * 22 21 20 24 24 C 1.38233 * 119.99784 * 359.50963 * 23 22 21 25 25 H 1.09001 * 109.47622 * 300.00498 * 1 2 3 26 26 H 1.09001 * 109.46827 * 60.00241 * 1 2 3 27 27 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47133 * 239.99304 * 2 1 3 29 29 H 1.09002 * 109.46626 * 184.86400 * 3 2 1 30 30 H 1.08994 * 109.47583 * 304.86438 * 3 2 1 31 31 H 1.08993 * 109.47350 * 64.87083 * 3 2 1 32 32 H 1.09000 * 109.46752 * 62.06582 * 4 2 1 33 33 H 1.08999 * 109.46771 * 302.06273 * 4 2 1 34 34 H 1.09003 * 109.47437 * 48.11089 * 6 5 4 35 35 H 1.08996 * 109.47038 * 168.10703 * 6 5 4 36 36 H 0.97003 * 119.99427 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47490 * 331.54506 * 15 5 4 38 38 H 1.08997 * 109.47519 * 211.54503 * 15 5 4 39 39 H 1.09008 * 109.47131 * 64.62242 * 16 15 5 40 40 H 1.09000 * 109.46895 * 304.63077 * 16 15 5 41 41 H 1.09004 * 109.46483 * 60.00051 * 17 16 15 42 42 H 1.08997 * 109.46761 * 300.00386 * 17 16 15 43 43 H 1.08996 * 109.46900 * 59.99921 * 18 17 16 44 44 H 1.09000 * 109.47092 * 300.00393 * 18 17 16 45 45 H 1.07997 * 119.99605 * 359.97438 * 20 19 18 46 46 H 1.07999 * 119.99990 * 180.02562 * 21 20 19 47 47 H 1.08004 * 119.99882 * 180.02562 * 22 21 20 48 48 H 1.08001 * 120.00191 * 179.72262 * 23 22 21 49 49 H 1.08010 * 120.00248 * 180.27502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5081 -0.6782 1.2746 6 6 4.0176 -0.8914 2.6358 7 6 3.7350 0.3282 3.4747 8 1 3.1593 1.1445 3.0640 9 6 4.2111 0.4018 4.7666 10 7 4.9116 -0.5926 5.2668 11 14 3.8602 1.9132 5.8066 12 1 2.5897 1.7183 6.5502 13 1 4.9710 2.1197 6.7703 14 1 3.7410 3.1031 4.9263 15 6 4.0796 -1.6563 0.3394 16 6 4.3026 -0.9917 -1.0206 17 6 4.7890 -2.0375 -2.0258 18 6 5.0114 -1.3730 -3.3858 19 6 5.4899 -2.4032 -4.3761 20 6 4.5753 -3.1128 -5.1317 21 6 5.0143 -4.0574 -6.0404 22 6 6.3679 -4.2920 -6.1941 23 6 7.2823 -3.5862 -5.4348 24 6 6.8435 -2.6385 -4.5292 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1265 1.4436 -0.0871 30 1 1.6073 1.9809 -0.8431 31 1 1.7496 1.9305 0.9303 32 1 1.7071 -1.7591 1.2309 33 1 1.6466 -0.2292 2.1389 34 1 3.5248 -1.7579 3.0767 35 1 5.0929 -1.0652 2.5981 36 1 5.2463 -0.5410 6.1758 37 1 3.3925 -2.4948 0.2256 38 1 5.0318 -2.0171 0.7279 39 1 5.0518 -0.2060 -0.9225 40 1 3.3658 -0.5586 -1.3713 41 1 4.0397 -2.8231 -2.1239 42 1 5.7257 -2.4705 -1.6750 43 1 5.7604 -0.5871 -3.2880 44 1 4.0744 -0.9402 -3.7364 45 1 3.5178 -2.9292 -5.0119 46 1 4.2997 -4.6116 -6.6310 47 1 6.7109 -5.0298 -6.9044 48 1 8.3396 -3.7726 -5.5516 49 1 7.5581 -2.0838 -3.9390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228444180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -4.653018 kcal Electronic energy + Delta-G solvation = -22791.009228 eV Core-core repulsion = 19716.629165 eV Total energy + Delta-G solvation = -3074.380063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.43416 -37.84065 -35.12222 -33.92319 -32.51029 -31.24092 -31.01898 -28.00346 -26.67827 -26.63795 -24.88134 -23.17931 -22.70002 -21.29591 -20.74444 -20.30005 -19.23510 -16.88672 -16.23285 -15.91466 -15.29907 -15.28159 -14.66776 -14.32349 -14.14415 -13.74542 -13.53458 -13.41876 -13.36047 -13.08008 -12.57475 -12.43201 -12.10012 -12.04504 -11.82847 -11.74681 -11.33674 -11.32058 -11.15257 -10.94349 -10.87415 -10.72323 -10.65169 -10.56267 -10.44763 -10.30886 -10.09288 -9.62561 -9.51013 -9.14375 -9.05956 -8.76299 -8.40188 -7.15436 -5.98778 -3.99281 1.23329 1.26214 3.33412 3.39740 3.44167 3.65191 4.44674 4.64011 4.71202 4.84126 4.93646 5.00624 5.11051 5.28643 5.33365 5.37364 5.39417 5.43535 5.47938 5.54661 5.65153 5.73080 5.88367 5.92589 5.97779 5.99302 6.03138 6.03689 6.10567 6.21063 6.28666 6.31080 6.33802 6.35500 6.36756 6.48215 6.51098 6.57233 6.63377 6.70354 6.74468 6.88484 6.98051 7.06008 7.35252 7.38633 7.87419 8.17471 8.30820 8.62092 9.08866 9.64516 11.11996 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.003010 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.334790 B = 9300.252319 C =10235.242536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.131 4.131 4 C 0.068 3.932 5 N -0.532 5.532 6 C 0.193 3.807 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.053 3.947 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.055 3.945 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.082 4.082 19 C -0.074 4.074 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.016 0.984 33 H 0.079 0.921 34 H -0.015 1.015 35 H 0.031 0.969 36 H 0.260 0.740 37 H 0.025 0.975 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 -4.510 -20.890 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.188 4.188 4 C -0.061 4.061 5 N -0.256 5.256 6 C 0.068 3.932 7 C -0.539 4.539 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.074 4.074 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.119 4.119 19 C -0.074 4.074 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.137 4.137 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.003 0.997 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.836 -4.092 -20.845 21.259 hybrid contribution -0.324 -0.195 0.968 1.040 sum -1.159 -4.287 -19.877 20.367 Atomic orbital electron populations 1.21833 0.96421 1.00891 1.01232 1.21295 0.93955 0.97492 0.98718 1.21644 1.02329 0.94815 1.00015 1.22131 0.89063 0.96991 0.97875 1.61980 1.05353 1.48247 1.10009 1.19776 0.95241 0.95812 0.82332 1.21180 1.33134 1.03005 0.96602 0.91862 1.24988 0.95388 0.96393 0.97956 1.69964 1.36766 1.31497 1.15832 0.86539 0.77696 0.83344 0.80090 1.20843 1.21341 1.19787 1.22134 0.99042 0.93005 0.93245 1.21851 1.01886 0.97814 0.94081 1.21564 1.01386 0.98587 0.93466 1.20662 1.01639 0.95980 0.93614 1.20050 0.93387 0.97375 0.96610 1.21086 0.99495 0.96651 0.96520 1.21135 0.95781 0.98235 0.98666 1.21112 0.93439 1.00241 1.00139 1.21147 0.99527 0.96531 0.96539 1.21118 0.95355 0.98532 0.98662 0.92775 0.93338 0.93440 0.91506 0.91216 0.94865 0.93058 0.96573 0.90250 0.99720 0.95077 0.93033 0.95661 0.92255 0.91650 0.91056 0.92373 0.92119 0.90881 0.91052 0.86146 0.86313 0.86420 0.86259 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 2 C -0.10 -1.49 2.47 -90.62 -0.22 -1.71 16 3 C -0.13 -2.09 8.75 37.15 0.33 -1.77 16 4 C 0.07 1.30 4.25 -3.82 -0.02 1.28 16 5 N -0.53 -11.17 3.52 -236.07 -0.83 -12.00 16 6 C 0.19 5.02 4.66 -4.98 -0.02 5.00 16 7 C -0.50 -13.98 8.41 -34.44 -0.29 -14.27 16 8 H 0.06 1.75 7.56 -52.48 -0.40 1.35 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 11 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.05 0.97 5.06 -3.83 -0.02 0.95 16 16 C -0.12 -1.71 5.14 -26.73 -0.14 -1.85 16 17 C -0.11 -1.36 5.20 -26.74 -0.14 -1.50 16 18 C -0.08 -0.87 5.34 -27.89 -0.15 -1.02 16 19 C -0.07 -0.80 5.13 -104.62 -0.54 -1.34 16 20 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 24 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.99 5.33 -51.93 -0.28 0.71 16 29 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.02 0.30 7.58 -51.93 -0.39 -0.09 16 33 H 0.08 1.70 6.95 -51.93 -0.36 1.34 16 34 H -0.01 -0.42 8.05 -51.93 -0.42 -0.84 16 35 H 0.03 0.87 7.61 -51.93 -0.40 0.47 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.03 0.44 7.42 -51.93 -0.39 0.05 16 38 H 0.06 1.11 7.39 -51.93 -0.38 0.73 16 39 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.07 1.01 4.65 -51.93 -0.24 0.77 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 44 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 46 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -29.59 386.23 -11.33 -40.93 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -9.11 Total: -1.06 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.93 Total: -24.25 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.09 Total: -38.17 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.59 -11.33 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228444180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.275 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds