Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 C 1.53008 * 109.46707 * 119.99988 * 2 1 3 5 5 N 1.46900 * 109.46657 * 182.06662 * 4 2 1 6 6 C 1.46901 * 110.99603 * 158.89766 * 5 4 2 7 7 C 1.50698 * 109.47262 * 288.10690 * 6 5 4 8 8 H 1.08004 * 119.99790 * 4.85146 * 7 6 5 9 9 C 1.37878 * 120.00405 * 184.84523 * 7 6 5 10 10 N 1.31520 * 119.99475 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00030 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47296 * 90.00327 * 11 9 7 13 13 H 1.48502 * 109.46708 * 209.99758 * 11 9 7 14 14 H 1.48495 * 109.47540 * 329.99673 * 11 9 7 15 15 C 1.46897 * 110.99866 * 282.84654 * 5 4 2 16 16 C 1.52998 * 109.47329 * 91.54528 * 15 5 4 17 17 C 1.52998 * 109.47870 * 184.62610 * 16 15 5 18 18 C 1.52992 * 109.47553 * 179.97438 * 17 16 15 19 19 C 1.50694 * 109.47398 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.00485 * 89.99877 * 19 18 17 21 21 C 1.38233 * 120.00195 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.99977 * 359.97293 * 21 20 19 23 23 C 1.38230 * 120.00076 * 0.28142 * 22 21 20 24 24 C 1.38233 * 119.99784 * 359.50963 * 23 22 21 25 25 H 1.09001 * 109.47622 * 300.00498 * 1 2 3 26 26 H 1.09001 * 109.46827 * 60.00241 * 1 2 3 27 27 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47133 * 239.99304 * 2 1 3 29 29 H 1.09002 * 109.46626 * 184.86400 * 3 2 1 30 30 H 1.08994 * 109.47583 * 304.86438 * 3 2 1 31 31 H 1.08993 * 109.47350 * 64.87083 * 3 2 1 32 32 H 1.09000 * 109.46752 * 62.06582 * 4 2 1 33 33 H 1.08999 * 109.46771 * 302.06273 * 4 2 1 34 34 H 1.09003 * 109.47437 * 48.11089 * 6 5 4 35 35 H 1.08996 * 109.47038 * 168.10703 * 6 5 4 36 36 H 0.97003 * 119.99427 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47490 * 331.54506 * 15 5 4 38 38 H 1.08997 * 109.47519 * 211.54503 * 15 5 4 39 39 H 1.09008 * 109.47131 * 64.62242 * 16 15 5 40 40 H 1.09000 * 109.46895 * 304.63077 * 16 15 5 41 41 H 1.09004 * 109.46483 * 60.00051 * 17 16 15 42 42 H 1.08997 * 109.46761 * 300.00386 * 17 16 15 43 43 H 1.08996 * 109.46900 * 59.99921 * 18 17 16 44 44 H 1.09000 * 109.47092 * 300.00393 * 18 17 16 45 45 H 1.07997 * 119.99605 * 359.97438 * 20 19 18 46 46 H 1.07999 * 119.99990 * 180.02562 * 21 20 19 47 47 H 1.08004 * 119.99882 * 180.02562 * 22 21 20 48 48 H 1.08001 * 120.00191 * 179.72262 * 23 22 21 49 49 H 1.08010 * 120.00248 * 180.27502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5081 -0.6782 1.2746 6 6 4.0176 -0.8914 2.6358 7 6 3.7350 0.3282 3.4747 8 1 3.1593 1.1445 3.0640 9 6 4.2111 0.4018 4.7666 10 7 4.9116 -0.5926 5.2668 11 14 3.8602 1.9132 5.8066 12 1 2.5897 1.7183 6.5502 13 1 4.9710 2.1197 6.7703 14 1 3.7410 3.1031 4.9263 15 6 4.0796 -1.6563 0.3394 16 6 4.3026 -0.9917 -1.0206 17 6 4.7890 -2.0375 -2.0258 18 6 5.0114 -1.3730 -3.3858 19 6 5.4899 -2.4032 -4.3761 20 6 4.5753 -3.1128 -5.1317 21 6 5.0143 -4.0574 -6.0404 22 6 6.3679 -4.2920 -6.1941 23 6 7.2823 -3.5862 -5.4348 24 6 6.8435 -2.6385 -4.5292 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1265 1.4436 -0.0871 30 1 1.6073 1.9809 -0.8431 31 1 1.7496 1.9305 0.9303 32 1 1.7071 -1.7591 1.2309 33 1 1.6466 -0.2292 2.1389 34 1 3.5248 -1.7579 3.0767 35 1 5.0929 -1.0652 2.5981 36 1 5.2463 -0.5410 6.1758 37 1 3.3925 -2.4948 0.2256 38 1 5.0318 -2.0171 0.7279 39 1 5.0518 -0.2060 -0.9225 40 1 3.3658 -0.5586 -1.3713 41 1 4.0397 -2.8231 -2.1239 42 1 5.7257 -2.4705 -1.6750 43 1 5.7604 -0.5871 -3.2880 44 1 4.0744 -0.9402 -3.7364 45 1 3.5178 -2.9292 -5.0119 46 1 4.2997 -4.6116 -6.6310 47 1 6.7109 -5.0298 -6.9044 48 1 8.3396 -3.7726 -5.5516 49 1 7.5581 -2.0838 -3.9390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228444180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -17.670346 kcal Electronic energy + Delta-G solvation = -22791.573702 eV Core-core repulsion = 19716.629165 eV Total energy + Delta-G solvation = -3074.944537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17773 -39.36406 -36.16412 -35.54827 -34.33489 -32.42713 -31.71803 -29.48963 -28.25574 -27.83072 -26.38699 -24.63264 -23.40672 -22.73118 -21.75193 -21.63968 -20.62159 -18.42451 -17.56793 -17.25480 -16.62003 -16.20284 -16.01671 -15.86017 -15.39771 -15.09045 -14.76841 -14.36119 -14.21975 -14.21303 -14.12086 -13.77974 -13.51133 -13.32931 -13.17184 -12.92119 -12.82545 -12.70859 -12.62119 -12.34387 -12.14258 -12.08887 -11.94880 -11.86892 -11.69950 -11.58360 -11.53564 -11.34410 -11.09304 -10.82179 -10.60384 -9.77662 -9.53014 -8.92741 -8.18615 -6.27931 0.50295 0.54469 1.39916 1.41245 1.52967 2.40542 2.91765 3.12445 3.30539 3.90362 3.93910 4.02349 4.15559 4.17809 4.22959 4.27291 4.33503 4.40737 4.44592 4.56938 4.66432 4.68892 4.69056 4.74841 4.85121 4.89001 4.95012 4.96630 4.98580 5.00604 5.14385 5.17956 5.19636 5.21668 5.24991 5.27461 5.30821 5.38694 5.43112 5.52067 5.63036 5.66387 5.66878 5.68678 5.78170 5.81299 6.10399 6.18571 6.44944 6.71790 6.88847 7.41289 8.92214 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.003010 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.334790 B = 9300.252319 C =10235.242536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.127 4.127 4 C 0.069 3.931 5 N -0.534 5.534 6 C 0.209 3.791 7 C -0.513 4.513 8 H 0.062 0.938 9 C -0.001 4.001 10 N -0.937 5.937 11 Si 0.966 3.034 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.053 3.947 16 C -0.104 4.104 17 C -0.102 4.102 18 C -0.074 4.074 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.129 4.129 24 C -0.135 4.135 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.017 0.983 33 H 0.050 0.950 34 H -0.046 1.046 35 H 0.002 0.998 36 H 0.263 0.737 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.131 0.869 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -3.902 -22.948 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.184 4.184 4 C -0.060 4.060 5 N -0.257 5.257 6 C 0.082 3.918 7 C -0.551 4.551 8 H 0.081 0.919 9 C -0.198 4.198 10 N -0.578 5.578 11 Si 0.791 3.209 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.189 1.189 15 C -0.075 4.075 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.153 4.153 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.069 0.931 34 H -0.028 1.028 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.149 0.851 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.154 0.846 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.967 -3.485 -22.929 23.275 hybrid contribution 0.044 -0.469 1.566 1.635 sum -1.922 -3.954 -21.363 21.810 Atomic orbital electron populations 1.21798 0.94291 1.01764 1.02097 1.21241 0.95637 0.96757 0.96946 1.21595 1.01302 0.95244 1.00260 1.22178 0.87613 0.97296 0.98886 1.61996 1.06765 1.49331 1.07628 1.19424 0.93221 0.94117 0.85010 1.21453 1.33034 1.03395 0.97254 0.91934 1.25907 0.95029 0.99593 0.99308 1.70096 1.37755 1.33624 1.16351 0.85425 0.77782 0.79451 0.78246 1.19909 1.20812 1.18863 1.22233 0.98051 0.93044 0.94166 1.21700 1.02148 0.97896 0.92415 1.21447 1.00933 0.97911 0.93740 1.20565 1.02179 0.95894 0.92513 1.20117 0.93772 0.97911 0.97210 1.21312 1.00041 0.96845 0.96686 1.21455 0.96452 0.98057 0.98545 1.21453 0.93443 1.00357 1.00202 1.21430 1.00698 0.96261 0.96287 1.21310 0.95543 0.99190 0.99301 0.93540 0.90845 0.92636 0.89988 0.93025 0.91870 0.94994 0.96498 0.93099 1.02833 0.98014 0.92817 0.94889 0.94034 0.92643 0.90053 0.91973 0.92949 0.90887 0.90054 0.85075 0.84287 0.84280 0.84624 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.19 71.98 0.66 -2.78 16 2 C -0.09 -2.57 2.47 -10.79 -0.03 -2.59 16 3 C -0.13 -3.87 8.75 71.98 0.63 -3.24 16 4 C 0.07 2.65 4.25 86.31 0.37 3.01 16 5 N -0.53 -23.08 3.52 -900.80 -3.17 -26.25 16 6 C 0.21 11.40 4.66 85.56 0.40 11.80 16 7 C -0.51 -29.54 8.41 25.60 0.22 -29.33 16 8 H 0.06 3.54 7.56 -2.91 -0.02 3.52 16 9 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 10 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 11 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.05 1.94 5.06 86.30 0.44 2.38 16 16 C -0.10 -2.94 5.14 30.59 0.16 -2.78 16 17 C -0.10 -2.39 5.20 30.59 0.16 -2.23 16 18 C -0.07 -1.47 5.34 29.84 0.16 -1.31 16 19 C -0.09 -1.83 5.13 -19.87 -0.10 -1.93 16 20 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 21 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 22 C -0.14 -2.20 10.05 22.27 0.22 -1.98 16 23 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 24 C -0.14 -2.70 9.70 22.27 0.22 -2.49 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 2.20 5.33 -2.39 -0.01 2.18 16 29 H 0.05 1.75 7.51 -2.39 -0.02 1.73 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.02 0.64 7.58 -2.39 -0.02 0.62 16 33 H 0.05 2.24 6.95 -2.39 -0.02 2.22 16 34 H -0.05 -2.73 8.05 -2.39 -0.02 -2.75 16 35 H 0.00 0.10 7.61 -2.39 -0.02 0.08 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.03 1.14 7.42 -2.39 -0.02 1.12 16 38 H 0.04 1.64 7.39 -2.39 -0.02 1.62 16 39 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 2.14 4.65 -2.39 -0.01 2.13 16 41 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 44 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 45 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 47 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 49 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -65.45 386.23 4.63 -60.82 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.87 Total: 14.78 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 4.62 Total: -39.20 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.89 Total: -83.53 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.45 4.63 -60.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228444180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.150 kcal (2) G-P(sol) polarization free energy of solvation -65.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds