Wall clock time and date at job start Tue Mar 31 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 C 1.52994 * 109.47417 * 120.00652 * 2 1 3 5 5 C 1.52995 * 109.47168 * 184.99837 * 4 2 1 6 6 C 1.50703 * 109.46964 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00002 * 269.72542 * 6 5 4 8 8 C 1.38235 * 119.99819 * 179.76757 * 7 6 5 9 9 C 1.38241 * 120.00061 * 0.50615 * 8 7 6 10 10 C 1.38232 * 119.99958 * 359.74808 * 9 8 7 11 11 C 1.38236 * 120.00038 * 359.97438 * 10 9 8 12 12 N 1.46902 * 109.46555 * 240.00539 * 2 1 3 13 13 C 1.46898 * 111.00157 * 85.00220 * 12 2 1 14 14 C 1.52997 * 109.47123 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.47164 * 299.99884 * 14 13 12 16 16 C 1.52999 * 109.47592 * 59.99590 * 14 13 12 17 17 C 1.52997 * 109.47232 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00129 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99861 * 180.02562 * 18 17 14 21 21 N 1.31511 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46938 * 59.99701 * 22 20 18 24 24 H 1.48494 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46872 * 299.99704 * 22 20 18 26 26 H 1.08998 * 109.46853 * 59.99382 * 1 2 3 27 27 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46780 * 299.99630 * 1 2 3 29 29 H 1.09000 * 109.47238 * 305.00016 * 4 2 1 30 30 H 1.08999 * 109.47305 * 64.99440 * 4 2 1 31 31 H 1.08999 * 109.47376 * 299.99267 * 5 4 2 32 32 H 1.08998 * 109.47244 * 60.00165 * 5 4 2 33 33 H 1.07993 * 119.99949 * 359.97438 * 7 6 5 34 34 H 1.08001 * 120.00251 * 180.23126 * 8 7 6 35 35 H 1.08004 * 119.99991 * 179.72249 * 9 8 7 36 36 H 1.08005 * 120.00150 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.99852 * 179.97438 * 11 10 9 38 38 H 1.00909 * 110.99603 * 208.95300 * 12 2 1 39 39 H 1.09001 * 109.47062 * 59.99599 * 13 12 2 40 40 H 1.09002 * 109.46774 * 299.99237 * 13 12 2 41 41 H 1.09001 * 109.46801 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.46998 * 299.99705 * 15 14 13 43 43 H 1.09000 * 109.47050 * 59.99996 * 15 14 13 44 44 H 1.09000 * 109.47160 * 300.00333 * 16 14 13 45 45 H 1.09002 * 109.46719 * 60.00054 * 16 14 13 46 46 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 47 47 H 1.09002 * 109.47153 * 299.99992 * 17 14 13 48 48 H 1.09001 * 109.47289 * 60.00075 * 17 14 13 49 49 H 0.96993 * 120.00442 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0672 -1.3234 2.5442 7 6 4.2046 -0.6320 3.7333 8 6 4.6608 -1.2845 4.8634 9 6 4.9896 -2.6259 4.8018 10 6 4.8571 -3.3159 3.6114 11 6 4.3955 -2.6649 2.4827 12 7 2.0196 -0.6924 -1.1996 13 6 2.0824 0.2227 -2.3469 14 6 2.5960 -0.5326 -3.5743 15 6 3.9934 -1.0849 -3.2854 16 6 1.6471 -1.6890 -3.8956 17 6 2.6608 0.4203 -4.7694 18 6 3.1674 -0.3236 -5.9782 19 1 3.4184 -1.3712 -5.9016 20 6 3.3113 0.3336 -7.1818 21 7 3.0061 1.6094 -7.2751 22 14 3.9398 -0.5884 -8.6800 23 1 3.0197 -1.7113 -8.9921 24 1 4.0026 0.3366 -9.8399 25 1 5.2964 -1.1233 -8.3988 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6055 -0.2620 2.1369 30 1 1.7517 -1.7716 1.2054 31 1 3.9995 -1.0729 0.4258 32 1 3.8533 0.4368 1.3572 33 1 3.9524 0.4170 3.7802 34 1 4.7647 -0.7453 5.7934 35 1 5.3502 -3.1345 5.6836 36 1 5.1143 -4.3638 3.5631 37 1 4.2924 -3.2040 1.5526 38 1 2.9173 -1.1205 -1.0289 39 1 2.7588 1.0463 -2.1182 40 1 1.0870 0.6164 -2.5525 41 1 4.3594 -1.6227 -4.1600 42 1 4.6695 -0.2611 -3.0566 43 1 3.9468 -1.7640 -2.4340 44 1 1.6005 -2.3681 -3.0442 45 1 0.6516 -1.2956 -4.1014 46 1 2.0127 -2.2269 -4.7702 47 1 1.6652 0.8134 -4.9751 48 1 3.3367 1.2444 -4.5409 49 1 3.1070 2.0716 -8.1218 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229671582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:36 Heat of formation + Delta-G solvation = -11.464672 kcal Electronic energy + Delta-G solvation = -22928.057514 eV Core-core repulsion = 19853.382075 eV Total energy + Delta-G solvation = -3074.675439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.57437 -38.12202 -36.04115 -33.32089 -32.28053 -31.07868 -30.12680 -28.56701 -26.85001 -26.29845 -25.21597 -24.05188 -22.76551 -22.34575 -21.13467 -20.15850 -17.84482 -16.98609 -16.23072 -15.90171 -15.62695 -15.19602 -14.78622 -14.55367 -14.10448 -13.64270 -13.60458 -13.38114 -13.12333 -13.06408 -12.75479 -12.54770 -12.18480 -11.96621 -11.92980 -11.64086 -11.50330 -11.37182 -11.20488 -10.93818 -10.89210 -10.80941 -10.73494 -10.52161 -10.45800 -10.19368 -10.08052 -9.64449 -9.11779 -8.98481 -8.84995 -8.80011 -8.29322 -8.01777 -5.93966 -3.94032 1.16454 1.20467 3.36032 3.40602 3.42851 3.58638 4.44008 4.51010 4.54340 4.63316 4.79096 4.91724 4.98949 5.00321 5.14305 5.32860 5.37228 5.41674 5.52004 5.53498 5.68020 5.73280 5.77117 5.84025 5.86009 5.88256 5.98601 6.00494 6.05128 6.18009 6.27403 6.31420 6.32032 6.38214 6.40177 6.48012 6.56559 6.69942 6.81890 6.82987 6.86034 7.24183 7.28576 7.30059 7.48277 7.72062 7.77576 7.89176 8.06465 8.51030 9.11207 9.68548 11.17699 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.002865 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.882769 B = 9772.159928 C =10390.625944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.040 0.960 4 C -0.112 4.112 5 C -0.088 4.088 6 C -0.074 4.074 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.130 4.130 10 C -0.119 4.119 11 C -0.116 4.116 12 N -0.683 5.683 13 C 0.070 3.930 14 C -0.058 4.058 15 C -0.128 4.128 16 C -0.115 4.115 17 C 0.034 3.966 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.278 1.278 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.337 0.663 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.042 0.958 45 H 0.038 0.962 46 H 0.053 0.947 47 H 0.014 0.986 48 H 0.012 0.988 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 -5.892 23.308 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.058 0.942 4 C -0.150 4.150 5 C -0.125 4.125 6 C -0.074 4.074 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.137 4.137 11 C -0.134 4.134 12 N -0.317 5.317 13 C -0.058 4.058 14 C -0.058 4.058 15 C -0.186 4.186 16 C -0.173 4.173 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.204 1.204 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.078 -5.987 23.014 23.780 hybrid contribution 1.163 0.219 -0.685 1.367 sum 1.241 -5.768 22.329 23.095 Atomic orbital electron populations 1.21761 0.94790 1.02108 1.00906 1.21525 0.95866 0.95824 0.89705 0.94237 1.21745 0.93723 1.01910 0.97626 1.20723 0.96285 1.00316 0.95210 1.19932 0.98089 0.94130 0.95263 1.21067 1.00212 0.99894 0.92573 1.21131 0.99521 0.94876 0.98299 1.21129 1.00959 0.94753 0.97923 1.21162 0.99574 0.99891 0.93030 1.21133 0.99264 0.94253 0.98765 1.60668 1.33426 1.33709 1.03916 1.22137 1.00065 0.93162 0.90469 1.20619 0.94086 0.96661 0.94473 1.21768 0.96983 0.99587 1.00240 1.21589 0.98215 0.97513 0.99935 1.19119 0.96905 0.93567 0.90780 1.21205 1.42804 0.96285 0.94190 0.92367 1.25016 0.95908 0.94833 0.98843 1.69952 1.49210 1.08990 1.25649 0.86731 0.79410 0.79645 0.82643 1.20321 1.21462 1.20370 0.92567 0.92175 0.93249 0.91514 0.90926 0.90673 0.91044 0.86215 0.86289 0.86363 0.86160 0.85857 0.84180 0.96046 0.91642 0.91754 0.94158 0.94920 0.93901 0.94235 0.92793 0.96720 0.96979 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.42 37.16 0.35 -1.27 16 2 C 0.08 0.98 2.65 -67.71 -0.18 0.80 16 3 H 0.04 0.50 7.80 -51.93 -0.40 0.10 16 4 C -0.11 -1.14 4.79 -26.74 -0.13 -1.27 16 5 C -0.09 -0.87 5.18 -27.88 -0.14 -1.02 16 6 C -0.07 -0.74 5.13 -104.62 -0.54 -1.28 16 7 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 8 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 9 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 10 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 11 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 12 N -0.68 -9.73 5.52 -106.73 -0.59 -10.32 16 13 C 0.07 1.22 4.45 -3.83 -0.02 1.20 16 14 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 15 C -0.13 -2.39 7.89 37.16 0.29 -2.09 16 16 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 17 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 18 C -0.51 -13.92 7.65 -34.44 -0.26 -14.19 16 19 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.79 6.37 -51.93 -0.33 0.46 16 32 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.34 4.60 4.51 -39.29 -0.18 4.42 16 39 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 40 H 0.07 1.18 7.44 -51.93 -0.39 0.80 16 41 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 44 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -29.53 381.04 -10.60 -40.13 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.88 Total: 1.57 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -2.59 Total: -27.53 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.15 Total: -36.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.53 -10.60 -40.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229671582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.667 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds