Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47047 * 2 1 4 4 C 1.52994 * 109.47417 * 120.00652 * 2 1 3 5 5 C 1.52995 * 109.47168 * 184.99837 * 4 2 1 6 6 C 1.50703 * 109.46964 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00002 * 269.72542 * 6 5 4 8 8 C 1.38235 * 119.99819 * 179.76757 * 7 6 5 9 9 C 1.38241 * 120.00061 * 0.50615 * 8 7 6 10 10 C 1.38232 * 119.99958 * 359.74808 * 9 8 7 11 11 C 1.38236 * 120.00038 * 359.97438 * 10 9 8 12 12 N 1.46902 * 109.46555 * 240.00539 * 2 1 3 13 13 C 1.46898 * 111.00157 * 85.00220 * 12 2 1 14 14 C 1.52997 * 109.47123 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.47164 * 299.99884 * 14 13 12 16 16 C 1.52999 * 109.47592 * 59.99590 * 14 13 12 17 17 C 1.52997 * 109.47232 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00129 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99861 * 180.02562 * 18 17 14 21 21 N 1.31511 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46938 * 59.99701 * 22 20 18 24 24 H 1.48494 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46872 * 299.99704 * 22 20 18 26 26 H 1.08998 * 109.46853 * 59.99382 * 1 2 3 27 27 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46780 * 299.99630 * 1 2 3 29 29 H 1.09000 * 109.47238 * 305.00016 * 4 2 1 30 30 H 1.08999 * 109.47305 * 64.99440 * 4 2 1 31 31 H 1.08999 * 109.47376 * 299.99267 * 5 4 2 32 32 H 1.08998 * 109.47244 * 60.00165 * 5 4 2 33 33 H 1.07993 * 119.99949 * 359.97438 * 7 6 5 34 34 H 1.08001 * 120.00251 * 180.23126 * 8 7 6 35 35 H 1.08004 * 119.99991 * 179.72249 * 9 8 7 36 36 H 1.08005 * 120.00150 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.99852 * 179.97438 * 11 10 9 38 38 H 1.00909 * 110.99603 * 208.95300 * 12 2 1 39 39 H 1.09001 * 109.47062 * 59.99599 * 13 12 2 40 40 H 1.09002 * 109.46774 * 299.99237 * 13 12 2 41 41 H 1.09001 * 109.46801 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.46998 * 299.99705 * 15 14 13 43 43 H 1.09000 * 109.47050 * 59.99996 * 15 14 13 44 44 H 1.09000 * 109.47160 * 300.00333 * 16 14 13 45 45 H 1.09002 * 109.46719 * 60.00054 * 16 14 13 46 46 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 47 47 H 1.09002 * 109.47153 * 299.99992 * 17 14 13 48 48 H 1.09001 * 109.47289 * 60.00075 * 17 14 13 49 49 H 0.96993 * 120.00442 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0672 -1.3234 2.5442 7 6 4.2046 -0.6320 3.7333 8 6 4.6608 -1.2845 4.8634 9 6 4.9896 -2.6259 4.8018 10 6 4.8571 -3.3159 3.6114 11 6 4.3955 -2.6649 2.4827 12 7 2.0196 -0.6924 -1.1996 13 6 2.0824 0.2227 -2.3469 14 6 2.5960 -0.5326 -3.5743 15 6 3.9934 -1.0849 -3.2854 16 6 1.6471 -1.6890 -3.8956 17 6 2.6608 0.4203 -4.7694 18 6 3.1674 -0.3236 -5.9782 19 1 3.4184 -1.3712 -5.9016 20 6 3.3113 0.3336 -7.1818 21 7 3.0061 1.6094 -7.2751 22 14 3.9398 -0.5884 -8.6800 23 1 3.0197 -1.7113 -8.9921 24 1 4.0026 0.3366 -9.8399 25 1 5.2964 -1.1233 -8.3988 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6055 -0.2620 2.1369 30 1 1.7517 -1.7716 1.2054 31 1 3.9995 -1.0729 0.4258 32 1 3.8533 0.4368 1.3572 33 1 3.9524 0.4170 3.7802 34 1 4.7647 -0.7453 5.7934 35 1 5.3502 -3.1345 5.6836 36 1 5.1143 -4.3638 3.5631 37 1 4.2924 -3.2040 1.5526 38 1 2.9173 -1.1205 -1.0289 39 1 2.7588 1.0463 -2.1182 40 1 1.0870 0.6164 -2.5525 41 1 4.3594 -1.6227 -4.1600 42 1 4.6695 -0.2611 -3.0566 43 1 3.9468 -1.7640 -2.4340 44 1 1.6005 -2.3681 -3.0442 45 1 0.6516 -1.2956 -4.1014 46 1 2.0127 -2.2269 -4.7702 47 1 1.6652 0.8134 -4.9751 48 1 3.3367 1.2444 -4.5409 49 1 3.1070 2.0716 -8.1218 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229671582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -25.132020 kcal Electronic energy + Delta-G solvation = -22928.650174 eV Core-core repulsion = 19853.382075 eV Total energy + Delta-G solvation = -3075.268099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29305 -39.41631 -37.36011 -34.72033 -33.84208 -31.72214 -31.35304 -29.39725 -28.81109 -27.87475 -26.69357 -25.09661 -24.09237 -23.41077 -21.87024 -21.14238 -19.50129 -18.32711 -17.65038 -16.98496 -16.60072 -16.44832 -15.92264 -15.72976 -15.52475 -14.90930 -14.63241 -14.51410 -14.25589 -14.09007 -13.90447 -13.74844 -13.58082 -13.50732 -13.12459 -12.81916 -12.78508 -12.56698 -12.52147 -12.34438 -12.23973 -12.15020 -12.09809 -11.91133 -11.82232 -11.60144 -11.46529 -11.31723 -10.84205 -10.68963 -10.49620 -9.77813 -9.54271 -9.23257 -8.13414 -6.20530 0.49513 0.54347 1.40837 1.43239 1.50474 2.44035 2.91819 3.20256 3.31677 3.72928 3.94438 4.07081 4.14242 4.21158 4.25370 4.28660 4.30064 4.36198 4.42108 4.55818 4.68187 4.73544 4.74772 4.77061 4.82290 4.83538 4.96338 4.98091 5.07452 5.09294 5.11122 5.19406 5.22447 5.22773 5.27536 5.34105 5.46266 5.52411 5.54605 5.59714 5.62568 5.67172 5.67742 5.78331 5.88630 5.93488 6.17619 6.19334 6.38566 6.62038 6.94475 7.46676 8.98800 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.002865 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.882769 B = 9772.159928 C =10390.625944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.035 0.965 4 C -0.100 4.100 5 C -0.083 4.083 6 C -0.087 4.087 7 C -0.131 4.131 8 C -0.127 4.127 9 C -0.136 4.136 10 C -0.128 4.128 11 C -0.132 4.132 12 N -0.678 5.678 13 C 0.084 3.916 14 C -0.054 4.054 15 C -0.121 4.121 16 C -0.106 4.106 17 C 0.040 3.960 18 C -0.514 4.514 19 H 0.066 0.934 20 C -0.005 4.005 21 N -0.938 5.938 22 Si 0.956 3.044 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.267 1.267 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.343 0.657 39 H 0.014 0.986 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.028 0.972 46 H 0.038 0.962 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -7.572 25.011 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 H 0.053 0.947 4 C -0.138 4.138 5 C -0.121 4.121 6 C -0.087 4.087 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.146 4.146 11 C -0.150 4.150 12 N -0.313 5.313 13 C -0.045 4.045 14 C -0.055 4.055 15 C -0.179 4.179 16 C -0.163 4.163 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.084 0.916 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.192 1.192 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.001 0.999 48 H 0.001 0.999 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.599 -7.686 24.734 25.908 hybrid contribution 0.987 0.764 -1.135 1.687 sum 1.586 -6.922 23.599 24.645 Atomic orbital electron populations 1.21749 0.94398 1.02113 1.01091 1.21598 0.96128 0.95690 0.89523 0.94658 1.21627 0.93874 1.01480 0.96788 1.20653 0.96013 1.00254 0.95153 1.19984 0.98888 0.94394 0.95448 1.21280 1.00416 1.00526 0.92696 1.21437 0.98936 0.95206 0.98891 1.21456 1.00424 0.94913 0.98548 1.21435 0.99303 1.00830 0.92990 1.21301 0.99856 0.94443 0.99382 1.60614 1.33765 1.33018 1.03920 1.21821 0.98972 0.93057 0.90690 1.20484 0.95644 0.95907 0.93445 1.21678 0.95516 0.99834 1.00833 1.21490 0.97231 0.97326 1.00250 1.19007 0.94062 0.93738 0.92967 1.21590 1.42003 0.96719 0.94904 0.91591 1.25930 0.96300 0.95662 1.02268 1.70101 1.50701 1.10738 1.26437 0.85633 0.79251 0.78384 0.78596 1.19344 1.21367 1.19226 0.94272 0.92211 0.91231 0.90336 0.91105 0.91306 0.91100 0.85289 0.84364 0.84319 0.84603 0.85581 0.83549 0.96769 0.92798 0.93437 0.94547 0.91498 0.91363 0.95257 0.94322 0.99898 0.99882 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.42 71.98 0.68 -2.32 16 2 C 0.08 1.82 2.65 44.92 0.12 1.94 16 3 H 0.04 0.86 7.80 -2.39 -0.02 0.84 16 4 C -0.10 -1.83 4.79 30.59 0.15 -1.69 16 5 C -0.08 -1.53 5.18 29.85 0.15 -1.38 16 6 C -0.09 -1.62 5.13 -19.86 -0.10 -1.72 16 7 C -0.13 -2.23 9.70 22.27 0.22 -2.02 16 8 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 9 C -0.14 -2.00 10.05 22.27 0.22 -1.78 16 10 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 11 C -0.13 -2.40 9.70 22.27 0.22 -2.19 16 12 N -0.68 -18.43 5.52 -491.58 -2.71 -21.14 16 13 C 0.08 2.91 4.45 86.30 0.38 3.30 16 14 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 15 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 16 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 17 C 0.04 2.09 4.04 29.85 0.12 2.22 16 18 C -0.51 -28.72 7.65 25.60 0.20 -28.52 16 19 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 20 C 0.00 -0.29 5.46 84.66 0.46 0.18 16 21 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 22 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 26 H 0.04 0.99 7.45 -2.39 -0.02 0.97 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.34 6.37 -2.39 -0.02 1.32 16 32 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.34 8.68 4.51 -89.69 -0.40 8.28 16 39 H 0.01 0.51 8.06 -2.39 -0.02 0.49 16 40 H 0.05 1.99 7.44 -2.39 -0.02 1.97 16 41 H 0.05 1.87 6.62 -2.39 -0.02 1.86 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.95 6.57 -2.39 -0.02 1.94 16 44 H 0.07 2.26 7.60 -2.39 -0.02 2.25 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 47 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 48 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 49 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -64.26 381.04 4.46 -59.80 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.48 Total: 19.24 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.38 Total: -47.03 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.43 Total: -78.82 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.26 4.46 -59.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229671582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.671 kcal (2) G-P(sol) polarization free energy of solvation -64.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds