Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47484 * 2 1 4 4 C 1.38239 * 119.99364 * 90.00166 * 3 2 1 5 5 C 1.38235 * 119.99421 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00052 * 359.95282 * 5 4 3 7 7 C 1.50699 * 119.99500 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47629 * 20.00713 * 7 6 5 9 9 C 1.52997 * 109.47156 * 260.00058 * 7 6 5 10 10 N 1.46904 * 109.46851 * 140.00506 * 7 6 5 11 11 C 1.46899 * 111.00029 * 204.99994 * 10 7 6 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 7 13 13 C 1.53006 * 109.47127 * 300.00134 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99645 * 12 11 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46744 * 90.00434 * 20 18 16 22 22 H 1.48500 * 109.47304 * 210.00023 * 20 18 16 23 23 H 1.48498 * 109.47341 * 330.00626 * 20 18 16 24 24 C 1.38227 * 119.99861 * 0.27807 * 6 5 4 25 25 C 1.38233 * 120.00053 * 270.02515 * 3 2 1 26 26 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46808 * 299.99611 * 1 2 3 28 28 H 1.09002 * 109.46764 * 59.99482 * 1 2 3 29 29 H 1.09002 * 109.46808 * 240.00389 * 2 1 3 30 30 H 1.09000 * 109.47252 * 120.00363 * 2 1 3 31 31 H 1.07990 * 120.00444 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.99779 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47489 * 60.00240 * 9 7 6 34 34 H 1.09007 * 109.47004 * 180.02562 * 9 7 6 35 35 H 1.09007 * 109.47280 * 300.00182 * 9 7 6 36 36 H 1.00908 * 110.99583 * 328.94906 * 10 7 6 37 37 H 1.09002 * 109.47043 * 299.99792 * 11 10 7 38 38 H 1.09001 * 109.47354 * 59.99854 * 11 10 7 39 39 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 40 40 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 42 42 H 1.09002 * 109.46716 * 60.00091 * 14 12 11 43 43 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 44 44 H 1.09001 * 109.47362 * 300.00732 * 14 12 11 45 45 H 1.09002 * 109.47103 * 300.00247 * 15 12 11 46 46 H 1.09001 * 109.47066 * 60.00169 * 15 12 11 47 47 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 48 48 H 1.08005 * 120.00048 * 179.72653 * 24 6 5 49 49 H 1.08000 * 120.00157 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0723 1.1973 5 6 2.7232 3.3758 1.1973 6 6 2.9541 4.0273 0.0001 7 6 3.4565 5.4481 0.0002 8 1 3.9088 5.6735 0.9660 9 6 2.2873 6.4025 -0.2507 10 7 4.4594 5.6129 -1.0605 11 6 5.3768 6.7175 -0.7505 12 6 6.4047 6.8576 -1.8751 13 6 7.1989 5.5562 -2.0052 14 6 5.6830 7.1483 -3.1925 15 6 7.3598 8.0084 -1.5527 16 6 8.3727 8.1460 -2.6600 17 1 8.3384 7.4795 -3.5091 18 6 9.3426 9.1234 -2.5897 19 7 9.3842 9.9354 -1.5559 20 14 10.5985 9.2934 -3.9620 21 1 10.0819 10.2295 -4.9925 22 1 11.8703 9.8218 -3.4065 23 1 10.8417 7.9643 -4.5780 24 6 2.7191 3.3773 -1.1970 25 6 2.2624 2.0726 -1.1971 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0825 1.5634 2.1325 32 1 2.9029 3.8850 2.1326 33 1 1.5431 6.2803 0.5363 34 1 2.6509 7.4302 -0.2510 35 1 1.8351 6.1771 -1.2165 36 1 4.9664 4.7543 -1.2152 37 1 4.8110 7.6445 -0.6575 38 1 5.8913 6.5101 0.1877 39 1 6.5181 4.7367 -2.2352 40 1 7.9309 5.6559 -2.8066 41 1 7.7131 5.3491 -1.0667 42 1 5.1173 8.0754 -3.0998 43 1 6.4153 7.2477 -3.9937 44 1 5.0022 6.3287 -3.4224 45 1 6.7938 8.9353 -1.4603 46 1 7.8741 7.8017 -0.6141 47 1 10.0668 10.6227 -1.5063 48 1 2.8952 3.8878 -2.1323 49 1 2.0824 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229677423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = -11.017435 kcal Electronic energy + Delta-G solvation = -22976.874838 eV Core-core repulsion = 19902.218793 eV Total energy + Delta-G solvation = -3074.656045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.81813 -37.75736 -35.71985 -33.61484 -32.28558 -31.00033 -30.10530 -28.46805 -26.85203 -26.30512 -25.38791 -24.18400 -22.86136 -22.52005 -21.37175 -20.05462 -17.98063 -16.52985 -16.16606 -15.91512 -15.45361 -14.79796 -14.64469 -14.24313 -14.01774 -13.84864 -13.69098 -13.42326 -13.28820 -13.05518 -12.68713 -12.55515 -12.22141 -11.98148 -11.96909 -11.69299 -11.63502 -11.47251 -11.27957 -10.98598 -10.90486 -10.83843 -10.73589 -10.60551 -10.46966 -10.21916 -10.09264 -9.65008 -9.00331 -8.96495 -8.82029 -8.56918 -8.29679 -8.07505 -5.94266 -3.94192 1.24873 1.35949 3.34673 3.41140 3.43941 3.67039 4.39957 4.52100 4.54070 4.66944 4.77543 4.94403 5.00819 5.09446 5.28303 5.34949 5.41173 5.41555 5.48497 5.49038 5.60994 5.72123 5.73948 5.81977 5.84280 5.87662 5.93782 6.01506 6.03996 6.05119 6.28614 6.32309 6.35775 6.39412 6.52879 6.55635 6.59435 6.69323 6.83099 6.86092 6.95487 7.24018 7.27267 7.29198 7.44888 7.70748 7.74444 7.88535 8.06240 8.50783 9.11193 9.68431 11.17411 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.002777 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741320 B =10079.162152 C =10396.213364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.087 4.087 7 C 0.121 3.879 8 H 0.047 0.953 9 C -0.132 4.132 10 N -0.679 5.679 11 C 0.070 3.930 12 C -0.057 4.057 13 C -0.129 4.129 14 C -0.115 4.115 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.096 4.096 25 C -0.120 4.120 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.340 0.660 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.258 0.742 48 H 0.132 0.868 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.191 -16.986 4.490 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.139 4.139 5 C -0.132 4.132 6 C -0.088 4.088 7 C 0.011 3.989 8 H 0.065 0.935 9 C -0.190 4.190 10 N -0.312 5.312 11 C -0.059 4.059 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.114 4.114 25 C -0.138 4.138 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.068 0.932 48 H 0.150 0.850 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.498 -16.448 4.171 24.374 hybrid contribution 1.372 -0.094 0.120 1.380 sum -16.126 -16.542 4.291 23.497 Atomic orbital electron populations 1.21745 0.94840 1.01528 1.02233 1.20530 0.96091 0.92890 1.02680 1.19874 0.99531 0.96137 0.93324 1.20929 1.00689 0.94873 0.97364 1.21033 0.99782 0.94770 0.97566 1.20031 0.99732 0.95723 0.93273 1.20441 0.93738 0.90652 0.94053 0.93489 1.21754 0.96648 0.99030 1.01589 1.60722 1.18037 1.09582 1.42860 1.22160 0.93084 0.93516 0.97101 1.20612 0.94102 0.97173 0.93864 1.21767 0.99309 0.95931 1.01608 1.21592 0.98913 0.99559 0.97189 1.19124 0.92955 0.91658 0.96671 1.21237 1.12290 1.15174 1.05667 0.92313 1.25023 0.97870 0.96080 0.95701 1.69970 1.34828 1.19601 1.29382 0.86663 0.81082 0.78243 0.82413 1.20795 1.21421 1.19966 1.21103 0.97695 0.94228 0.98390 1.21043 1.00374 0.95058 0.97345 0.92545 0.92624 0.92532 0.91136 0.91246 0.86463 0.86339 0.93097 0.92203 0.92003 0.83985 0.91506 0.95918 0.94844 0.91742 0.94164 0.94200 0.92768 0.93916 0.96696 0.96958 0.93199 0.84999 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.09 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 5 C -0.11 -1.23 9.67 -39.58 -0.38 -1.62 16 6 C -0.09 -1.04 4.71 -104.63 -0.49 -1.53 16 7 C 0.12 1.55 2.82 -68.86 -0.19 1.35 16 8 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 9 C -0.13 -1.60 9.39 37.16 0.35 -1.25 16 10 N -0.68 -9.86 4.91 -107.95 -0.53 -10.39 16 11 C 0.07 1.21 4.45 -3.83 -0.02 1.20 16 12 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 13 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 14 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 15 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 16 C -0.51 -13.89 7.65 -34.44 -0.26 -14.15 16 17 H 0.06 1.57 5.68 -52.48 -0.30 1.28 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.10 -1.11 9.01 -39.59 -0.36 -1.46 16 25 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.15 8.04 -52.49 -0.42 0.73 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.77 7.45 -51.92 -0.39 0.38 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.34 4.93 6.04 -39.29 -0.24 4.70 16 37 H 0.07 1.19 7.44 -51.93 -0.39 0.81 16 38 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 39 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 40 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 44 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.13 1.54 7.73 -52.48 -0.41 1.14 16 49 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -29.14 382.67 -10.22 -39.36 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -9.00 Total: 1.44 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -2.17 Total: -26.63 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.21 Total: -36.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.14 -10.22 -39.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229677423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.346 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds