Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47484 * 2 1 4 4 C 1.38239 * 119.99364 * 90.00166 * 3 2 1 5 5 C 1.38235 * 119.99421 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00052 * 359.95282 * 5 4 3 7 7 C 1.50699 * 119.99500 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47629 * 20.00713 * 7 6 5 9 9 C 1.52997 * 109.47156 * 260.00058 * 7 6 5 10 10 N 1.46904 * 109.46851 * 140.00506 * 7 6 5 11 11 C 1.46899 * 111.00029 * 204.99994 * 10 7 6 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 7 13 13 C 1.53006 * 109.47127 * 300.00134 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99645 * 12 11 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46744 * 90.00434 * 20 18 16 22 22 H 1.48500 * 109.47304 * 210.00023 * 20 18 16 23 23 H 1.48498 * 109.47341 * 330.00626 * 20 18 16 24 24 C 1.38227 * 119.99861 * 0.27807 * 6 5 4 25 25 C 1.38233 * 120.00053 * 270.02515 * 3 2 1 26 26 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46808 * 299.99611 * 1 2 3 28 28 H 1.09002 * 109.46764 * 59.99482 * 1 2 3 29 29 H 1.09002 * 109.46808 * 240.00389 * 2 1 3 30 30 H 1.09000 * 109.47252 * 120.00363 * 2 1 3 31 31 H 1.07990 * 120.00444 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.99779 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47489 * 60.00240 * 9 7 6 34 34 H 1.09007 * 109.47004 * 180.02562 * 9 7 6 35 35 H 1.09007 * 109.47280 * 300.00182 * 9 7 6 36 36 H 1.00908 * 110.99583 * 328.94906 * 10 7 6 37 37 H 1.09002 * 109.47043 * 299.99792 * 11 10 7 38 38 H 1.09001 * 109.47354 * 59.99854 * 11 10 7 39 39 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 40 40 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 42 42 H 1.09002 * 109.46716 * 60.00091 * 14 12 11 43 43 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 44 44 H 1.09001 * 109.47362 * 300.00732 * 14 12 11 45 45 H 1.09002 * 109.47103 * 300.00247 * 15 12 11 46 46 H 1.09001 * 109.47066 * 60.00169 * 15 12 11 47 47 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 48 48 H 1.08005 * 120.00048 * 179.72653 * 24 6 5 49 49 H 1.08000 * 120.00157 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0723 1.1973 5 6 2.7232 3.3758 1.1973 6 6 2.9541 4.0273 0.0001 7 6 3.4565 5.4481 0.0002 8 1 3.9088 5.6735 0.9660 9 6 2.2873 6.4025 -0.2507 10 7 4.4594 5.6129 -1.0605 11 6 5.3768 6.7175 -0.7505 12 6 6.4047 6.8576 -1.8751 13 6 7.1989 5.5562 -2.0052 14 6 5.6830 7.1483 -3.1925 15 6 7.3598 8.0084 -1.5527 16 6 8.3727 8.1460 -2.6600 17 1 8.3384 7.4795 -3.5091 18 6 9.3426 9.1234 -2.5897 19 7 9.3842 9.9354 -1.5559 20 14 10.5985 9.2934 -3.9620 21 1 10.0819 10.2295 -4.9925 22 1 11.8703 9.8218 -3.4065 23 1 10.8417 7.9643 -4.5780 24 6 2.7191 3.3773 -1.1970 25 6 2.2624 2.0726 -1.1971 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0825 1.5634 2.1325 32 1 2.9029 3.8850 2.1326 33 1 1.5431 6.2803 0.5363 34 1 2.6509 7.4302 -0.2510 35 1 1.8351 6.1771 -1.2165 36 1 4.9664 4.7543 -1.2152 37 1 4.8110 7.6445 -0.6575 38 1 5.8913 6.5101 0.1877 39 1 6.5181 4.7367 -2.2352 40 1 7.9309 5.6559 -2.8066 41 1 7.7131 5.3491 -1.0667 42 1 5.1173 8.0754 -3.0998 43 1 6.4153 7.2477 -3.9937 44 1 5.0022 6.3287 -3.4224 45 1 6.7938 8.9353 -1.4603 46 1 7.8741 7.8017 -0.6141 47 1 10.0668 10.6227 -1.5063 48 1 2.8952 3.8878 -2.1323 49 1 2.0824 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229677423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = -24.244892 kcal Electronic energy + Delta-G solvation = -22977.448423 eV Core-core repulsion = 19902.218793 eV Total energy + Delta-G solvation = -3075.229630 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67706 -39.15884 -36.92085 -34.80104 -34.01557 -31.79696 -31.27533 -29.34741 -28.79523 -27.88654 -26.81739 -25.20196 -24.24366 -23.56354 -22.30048 -20.96244 -19.59031 -18.32996 -17.53223 -16.84718 -16.51792 -16.29873 -15.80316 -15.45130 -15.26643 -14.91835 -14.56821 -14.46687 -14.44250 -14.25558 -13.98144 -13.88435 -13.55407 -13.31737 -13.21903 -12.86231 -12.81247 -12.60229 -12.56943 -12.35695 -12.24713 -12.18368 -12.11969 -11.97026 -11.87013 -11.61541 -11.52044 -11.35155 -10.85141 -10.73081 -10.50220 -9.76632 -9.39492 -9.31685 -8.13665 -6.20575 0.44043 0.55898 1.40931 1.41483 1.52046 2.43850 2.86068 3.20119 3.25854 3.73096 3.96283 4.00429 4.16897 4.18284 4.21301 4.29712 4.38204 4.45087 4.51892 4.56652 4.64198 4.73185 4.74857 4.75966 4.78088 4.90996 4.95632 5.00325 5.08715 5.11044 5.11587 5.19576 5.21997 5.22464 5.26887 5.36166 5.41111 5.51922 5.54294 5.56316 5.59155 5.65514 5.72047 5.78159 5.87932 5.93250 6.13408 6.18742 6.37661 6.52627 6.94457 7.46575 8.98688 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.002777 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.741320 B =10079.162152 C =10396.213364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.125 4.125 5 C -0.122 4.122 6 C -0.100 4.100 7 C 0.123 3.877 8 H 0.042 0.958 9 C -0.128 4.128 10 N -0.671 5.671 11 C 0.083 3.917 12 C -0.053 4.053 13 C -0.121 4.121 14 C -0.106 4.106 15 C 0.040 3.960 16 C -0.512 4.512 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.263 1.263 24 C -0.105 4.105 25 C -0.126 4.126 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.343 0.657 37 H 0.058 0.942 38 H 0.014 0.986 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.038 0.962 44 H 0.068 0.932 45 H -0.016 1.016 46 H -0.017 1.017 47 H 0.259 0.741 48 H 0.128 0.872 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.135 -19.283 3.784 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.100 4.100 7 C 0.014 3.986 8 H 0.060 0.940 9 C -0.186 4.186 10 N -0.304 5.304 11 C -0.046 4.046 12 C -0.053 4.053 13 C -0.179 4.179 14 C -0.163 4.163 15 C 0.002 3.998 16 C -0.550 4.550 17 H 0.084 0.916 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.187 1.187 24 C -0.124 4.124 25 C -0.144 4.144 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.003 0.997 46 H 0.001 0.999 47 H 0.068 0.932 48 H 0.146 0.854 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.456 -18.764 3.457 26.545 hybrid contribution 1.599 0.577 0.393 1.745 sum -16.857 -18.187 3.851 25.094 Atomic orbital electron populations 1.21729 0.94236 1.02345 1.01840 1.20582 0.96515 0.91492 1.03522 1.20191 0.98567 0.97202 0.93006 1.21196 1.00117 0.94576 0.98397 1.21202 0.99864 0.95358 0.97578 1.19934 1.01013 0.95114 0.93971 1.20431 0.93233 0.91879 0.93082 0.93954 1.21714 0.96691 0.98123 1.02058 1.60662 1.17343 1.08749 1.43662 1.21855 0.92734 0.94436 0.95560 1.20466 0.93921 0.95698 0.95228 1.21677 0.99330 0.96146 1.00730 1.21493 0.98668 1.00141 0.96006 1.19010 0.93305 0.92542 0.94945 1.21609 1.12432 1.14900 1.06099 0.91601 1.25937 1.00216 0.95910 0.98194 1.70113 1.35861 1.20441 1.31537 0.85565 0.78235 0.78698 0.79280 1.20111 1.21277 1.18676 1.21129 0.98325 0.94871 0.98028 1.21259 1.00067 0.94727 0.98383 0.91163 0.92920 0.93030 0.90428 0.90323 0.84620 0.85557 0.91665 0.93331 0.92148 0.83696 0.92342 0.96754 0.91618 0.93378 0.94690 0.95081 0.94285 0.91341 0.99735 0.99908 0.93197 0.85442 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.90 71.98 0.71 -0.87 16 2 C -0.08 -1.03 6.06 29.85 0.18 -0.85 16 3 C -0.09 -1.54 5.13 -19.86 -0.10 -1.64 16 4 C -0.12 -2.22 9.70 22.27 0.22 -2.01 16 5 C -0.12 -2.47 9.67 22.27 0.22 -2.25 16 6 C -0.10 -2.24 4.71 -19.87 -0.09 -2.34 16 7 C 0.12 3.05 2.82 44.17 0.12 3.17 16 8 H 0.04 1.10 7.66 -2.39 -0.02 1.08 16 9 C -0.13 -3.00 9.39 71.98 0.68 -2.33 16 10 N -0.67 -18.84 4.91 -495.45 -2.43 -21.28 16 11 C 0.08 2.91 4.45 86.30 0.38 3.29 16 12 C -0.05 -2.12 0.60 -52.18 -0.03 -2.15 16 13 C -0.12 -4.48 7.89 71.98 0.57 -3.91 16 14 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16 15 C 0.04 2.08 4.04 29.84 0.12 2.20 16 16 C -0.51 -28.60 7.65 25.60 0.20 -28.41 16 17 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 18 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 19 N -0.94 -57.89 13.29 21.45 0.28 -57.61 16 20 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 C -0.11 -2.27 9.01 22.27 0.20 -2.07 16 25 C -0.13 -2.36 9.70 22.27 0.22 -2.15 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 30 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.14 1.85 8.06 -2.92 -0.02 1.82 16 32 H 0.13 2.27 8.04 -2.91 -0.02 2.25 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.23 7.45 -2.38 -0.02 1.21 16 35 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.34 9.37 6.04 -89.69 -0.54 8.83 16 37 H 0.06 2.13 7.44 -2.39 -0.02 2.12 16 38 H 0.01 0.52 8.06 -2.39 -0.02 0.50 16 39 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 40 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 44 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 45 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 46 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.13 2.80 7.73 -2.91 -0.02 2.77 16 49 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -63.18 382.67 4.85 -58.33 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.35 Total: 19.33 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 4.63 Total: -45.65 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.15 Total: -78.88 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.18 4.85 -58.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229677423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.089 kcal (2) G-P(sol) polarization free energy of solvation -63.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds