Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.52998 * 109.47113 * 175.03757 * 3 2 1 5 5 H 1.09005 * 109.46940 * 305.27605 * 4 3 2 6 6 N 1.46895 * 109.47314 * 65.27199 * 4 3 2 7 7 C 1.46898 * 111.00495 * 204.43712 * 6 4 3 8 8 C 1.53001 * 109.47191 * 174.75311 * 7 6 4 9 9 C 1.53004 * 109.47213 * 300.00239 * 8 7 6 10 10 C 1.52997 * 109.47171 * 60.00250 * 8 7 6 11 11 C 1.52999 * 109.46650 * 180.02562 * 8 7 6 12 12 C 1.50710 * 109.46919 * 179.97438 * 11 8 7 13 13 H 1.07997 * 119.99459 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00066 * 179.97438 * 12 11 8 15 15 N 1.31507 * 120.00000 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00000 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47309 * 89.99760 * 16 14 12 18 18 H 1.48497 * 109.46788 * 209.99922 * 16 14 12 19 19 H 1.48500 * 109.47200 * 329.99996 * 16 14 12 20 20 C 1.50701 * 109.47257 * 185.27531 * 4 3 2 21 21 C 1.38234 * 119.99972 * 279.72845 * 20 4 3 22 22 C 1.38229 * 119.99945 * 179.78942 * 21 20 4 23 23 C 1.38239 * 120.00066 * 0.43501 * 22 21 20 24 24 C 1.38239 * 119.99838 * 359.81487 * 23 22 21 25 25 C 1.38234 * 119.99814 * 99.99832 * 20 4 3 26 26 H 1.09004 * 109.46866 * 299.99852 * 1 2 3 27 27 H 1.08997 * 109.47251 * 59.99095 * 1 2 3 28 28 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46447 * 240.00426 * 2 1 3 30 30 H 1.08997 * 109.47251 * 120.00905 * 2 1 3 31 31 H 1.09004 * 109.46658 * 55.03675 * 3 2 1 32 32 H 1.08998 * 109.47270 * 295.04167 * 3 2 1 33 33 H 1.00908 * 110.99599 * 80.48387 * 6 4 3 34 34 H 1.09002 * 109.47101 * 294.75675 * 7 6 4 35 35 H 1.09003 * 109.46777 * 54.75479 * 7 6 4 36 36 H 1.08997 * 109.47102 * 59.99795 * 9 8 7 37 37 H 1.09002 * 109.46817 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.46799 * 300.00120 * 9 8 7 39 39 H 1.09002 * 109.47015 * 59.99701 * 10 8 7 40 40 H 1.08999 * 109.47288 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.46931 * 300.00074 * 10 8 7 42 42 H 1.08992 * 109.47960 * 299.99799 * 11 8 7 43 43 H 1.08997 * 109.47250 * 60.00694 * 11 8 7 44 44 H 0.97002 * 120.00111 * 180.02562 * 15 14 12 45 45 H 1.07995 * 120.00011 * 359.97438 * 21 20 4 46 46 H 1.07999 * 120.00351 * 180.27354 * 22 21 20 47 47 H 1.07996 * 120.00252 * 179.83317 * 23 22 21 48 48 H 1.07998 * 119.99813 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00519 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1248 5 1 3.8579 0.8756 1.0074 6 7 4.1549 0.8295 -1.0718 7 6 5.4890 0.2872 -0.7818 8 6 6.0151 -0.4572 -2.0107 9 6 5.0632 -1.6034 -2.3589 10 6 6.1036 0.5094 -3.1933 11 6 7.4043 -1.0225 -1.7083 12 6 7.9223 -1.7563 -2.9185 13 1 7.3209 -1.8132 -3.8137 14 6 9.1643 -2.3539 -2.8830 15 7 9.6161 -2.9946 -3.9388 16 14 10.2046 -2.2547 -1.3347 17 1 9.8973 -3.4123 -0.4567 18 1 11.6431 -2.2806 -1.7025 19 1 9.9005 -0.9924 -0.6140 20 6 4.0566 2.8628 0.2551 21 6 4.1876 3.6551 -0.8701 22 6 4.6345 4.9576 -0.7501 23 6 4.9590 5.4652 0.4942 24 6 4.8329 4.6712 1.6188 25 6 4.3820 3.3700 1.4992 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.6059 1.9813 0.8422 32 1 1.7511 1.9301 -0.9310 33 1 4.1903 1.4873 -1.8362 34 1 6.1670 1.1038 -0.5337 35 1 5.4259 -0.4015 0.0607 36 1 4.0734 -1.2010 -2.5741 37 1 5.4383 -2.1339 -3.2341 38 1 5.0002 -2.2920 -1.5164 39 1 6.7817 1.3260 -2.9452 40 1 6.4788 -0.0208 -4.0686 41 1 5.1137 0.9118 -3.4085 42 1 8.0826 -0.2064 -1.4600 43 1 7.3408 -1.7113 -0.8659 44 1 10.4897 -3.4154 -3.9138 45 1 3.9379 3.2573 -1.8426 46 1 4.7326 5.5780 -1.6286 47 1 5.3107 6.4820 0.5876 48 1 5.0869 5.0676 2.5908 49 1 4.2835 2.7498 2.3779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229683037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -5.963602 kcal Electronic energy + Delta-G solvation = -23670.448229 eV Core-core repulsion = 20596.011335 eV Total energy + Delta-G solvation = -3074.436894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83462 -37.67047 -35.99703 -33.47381 -32.24694 -31.09545 -30.58460 -28.31362 -27.41514 -26.33747 -25.04348 -23.80809 -22.71612 -21.84512 -21.26399 -20.29949 -17.84002 -17.19338 -16.73050 -15.72388 -15.49818 -14.90316 -14.73503 -14.38454 -14.17050 -13.76136 -13.56863 -13.50312 -13.34708 -12.97059 -12.83062 -12.56381 -12.29561 -12.10841 -11.96392 -11.61825 -11.52186 -11.18377 -11.11743 -10.95643 -10.93065 -10.81646 -10.66618 -10.53360 -10.46199 -10.32256 -9.75093 -9.66047 -9.25970 -9.02668 -8.87972 -8.77501 -8.47203 -8.14204 -5.97576 -3.93358 1.25313 1.29741 3.33880 3.41439 3.45408 3.68266 4.38427 4.50625 4.55392 4.77478 4.87362 4.99394 5.06775 5.11487 5.21287 5.33904 5.35958 5.40645 5.47209 5.61888 5.67261 5.70529 5.78415 5.85041 5.88527 5.91746 5.95016 5.96756 6.10386 6.21671 6.28184 6.31164 6.35946 6.40184 6.45790 6.47730 6.50580 6.64329 6.75374 6.83541 6.89833 7.11701 7.17681 7.23787 7.34460 7.37353 7.50003 7.65365 7.88511 8.62715 9.08611 9.65913 11.15601 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.004395 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.339481 B = 6369.679607 C = 7533.313008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.097 4.097 4 C 0.122 3.878 5 H 0.083 0.917 6 N -0.672 5.672 7 C 0.068 3.932 8 C -0.046 4.046 9 C -0.117 4.117 10 C -0.129 4.129 11 C -0.004 4.004 12 C -0.505 4.505 13 H 0.078 0.922 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.875 3.125 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.267 1.267 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.339 0.661 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.011 0.989 43 H 0.009 0.991 44 H 0.261 0.739 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 14.132 10.038 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.135 4.135 4 C 0.012 3.988 5 H 0.101 0.899 6 N -0.303 5.303 7 C -0.061 4.061 8 C -0.047 4.047 9 C -0.174 4.174 10 C -0.186 4.186 11 C -0.042 4.042 12 C -0.543 4.543 13 H 0.096 0.904 14 C -0.135 4.135 15 N -0.546 5.546 16 Si 0.702 3.298 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.106 4.106 21 C -0.134 4.134 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.134 4.134 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.030 0.970 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.483 13.406 10.047 22.812 hybrid contribution 1.408 0.900 0.943 1.919 sum -14.075 14.306 10.990 22.881 Atomic orbital electron populations 1.21795 0.96730 1.01254 1.01165 1.21420 0.94453 0.96491 1.03013 1.21536 0.93122 0.97355 1.01504 1.20706 0.94820 0.88374 0.94936 0.89906 1.60780 1.23974 1.39266 1.06310 1.22148 0.87564 0.97313 0.99033 1.20387 0.96677 0.94860 0.92748 1.21606 0.97471 0.97093 1.01225 1.21760 0.98680 0.98532 0.99662 1.19627 0.91656 0.95592 0.97352 1.21143 1.01886 1.32154 0.99151 0.90432 1.25006 0.97704 0.95069 0.95771 1.69907 1.19290 1.36301 1.29092 0.86863 0.79605 0.78924 0.84366 1.20454 1.21601 1.19213 1.20834 0.98614 0.97711 0.93447 1.20959 0.99991 0.94075 0.98340 1.21126 0.99098 0.95640 0.97516 1.21126 1.00742 0.99806 0.92864 1.21134 0.99769 0.94333 0.98537 1.21057 0.99617 0.95669 0.97031 0.93419 0.93029 0.93008 0.90303 0.92636 0.92369 0.92025 0.83938 0.95883 0.91739 0.93587 0.92267 0.94339 0.94264 0.91282 0.94654 0.97043 0.97249 0.92933 0.86073 0.86150 0.86357 0.86323 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.21 5.77 -26.73 -0.15 -1.37 16 3 C -0.10 -1.00 4.87 -26.73 -0.13 -1.13 16 4 C 0.12 1.42 2.22 -68.87 -0.15 1.26 16 5 H 0.08 1.00 7.59 -51.93 -0.39 0.60 16 6 N -0.67 -8.97 4.92 -107.95 -0.53 -9.50 16 7 C 0.07 1.11 4.46 -3.82 -0.02 1.10 16 8 C -0.05 -0.89 0.60 -154.51 -0.09 -0.98 16 9 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 10 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 11 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 12 C -0.51 -14.02 8.20 -34.44 -0.28 -14.30 16 13 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 14 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 15 N -0.91 -27.92 13.96 55.43 0.77 -27.15 16 16 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 20 C -0.10 -1.21 4.75 -104.62 -0.50 -1.71 16 21 C -0.12 -1.32 9.13 -39.59 -0.36 -1.68 16 22 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 23 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.27 9.67 -39.58 -0.38 -1.66 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.34 4.45 4.62 -39.29 -0.18 4.27 16 34 H 0.02 0.39 8.07 -51.93 -0.42 -0.02 16 35 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.05 0.78 7.60 -51.93 -0.39 0.38 16 37 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 41 H 0.03 0.55 6.70 -51.93 -0.35 0.20 16 42 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 43 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.12 1.30 6.49 -52.49 -0.34 0.96 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 1.15 8.04 -52.49 -0.42 0.73 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -29.71 377.83 -10.12 -39.83 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.90 Total: 2.65 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -2.49 Total: -28.85 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.24 Total: -36.65 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.71 -10.12 -39.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229683037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.871 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds