Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.52998 * 109.47113 * 175.03757 * 3 2 1 5 5 H 1.09005 * 109.46940 * 305.27605 * 4 3 2 6 6 N 1.46895 * 109.47314 * 65.27199 * 4 3 2 7 7 C 1.46898 * 111.00495 * 204.43712 * 6 4 3 8 8 C 1.53001 * 109.47191 * 174.75311 * 7 6 4 9 9 C 1.53004 * 109.47213 * 300.00239 * 8 7 6 10 10 C 1.52997 * 109.47171 * 60.00250 * 8 7 6 11 11 C 1.52999 * 109.46650 * 180.02562 * 8 7 6 12 12 C 1.50710 * 109.46919 * 179.97438 * 11 8 7 13 13 H 1.07997 * 119.99459 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00066 * 179.97438 * 12 11 8 15 15 N 1.31507 * 120.00000 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00000 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47309 * 89.99760 * 16 14 12 18 18 H 1.48497 * 109.46788 * 209.99922 * 16 14 12 19 19 H 1.48500 * 109.47200 * 329.99996 * 16 14 12 20 20 C 1.50701 * 109.47257 * 185.27531 * 4 3 2 21 21 C 1.38234 * 119.99972 * 279.72845 * 20 4 3 22 22 C 1.38229 * 119.99945 * 179.78942 * 21 20 4 23 23 C 1.38239 * 120.00066 * 0.43501 * 22 21 20 24 24 C 1.38239 * 119.99838 * 359.81487 * 23 22 21 25 25 C 1.38234 * 119.99814 * 99.99832 * 20 4 3 26 26 H 1.09004 * 109.46866 * 299.99852 * 1 2 3 27 27 H 1.08997 * 109.47251 * 59.99095 * 1 2 3 28 28 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46447 * 240.00426 * 2 1 3 30 30 H 1.08997 * 109.47251 * 120.00905 * 2 1 3 31 31 H 1.09004 * 109.46658 * 55.03675 * 3 2 1 32 32 H 1.08998 * 109.47270 * 295.04167 * 3 2 1 33 33 H 1.00908 * 110.99599 * 80.48387 * 6 4 3 34 34 H 1.09002 * 109.47101 * 294.75675 * 7 6 4 35 35 H 1.09003 * 109.46777 * 54.75479 * 7 6 4 36 36 H 1.08997 * 109.47102 * 59.99795 * 9 8 7 37 37 H 1.09002 * 109.46817 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.46799 * 300.00120 * 9 8 7 39 39 H 1.09002 * 109.47015 * 59.99701 * 10 8 7 40 40 H 1.08999 * 109.47288 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.46931 * 300.00074 * 10 8 7 42 42 H 1.08992 * 109.47960 * 299.99799 * 11 8 7 43 43 H 1.08997 * 109.47250 * 60.00694 * 11 8 7 44 44 H 0.97002 * 120.00111 * 180.02562 * 15 14 12 45 45 H 1.07995 * 120.00011 * 359.97438 * 21 20 4 46 46 H 1.07999 * 120.00351 * 180.27354 * 22 21 20 47 47 H 1.07996 * 120.00252 * 179.83317 * 23 22 21 48 48 H 1.07998 * 119.99813 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.00519 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1248 5 1 3.8579 0.8756 1.0074 6 7 4.1549 0.8295 -1.0718 7 6 5.4890 0.2872 -0.7818 8 6 6.0151 -0.4572 -2.0107 9 6 5.0632 -1.6034 -2.3589 10 6 6.1036 0.5094 -3.1933 11 6 7.4043 -1.0225 -1.7083 12 6 7.9223 -1.7563 -2.9185 13 1 7.3209 -1.8132 -3.8137 14 6 9.1643 -2.3539 -2.8830 15 7 9.6161 -2.9946 -3.9388 16 14 10.2046 -2.2547 -1.3347 17 1 9.8973 -3.4123 -0.4567 18 1 11.6431 -2.2806 -1.7025 19 1 9.9005 -0.9924 -0.6140 20 6 4.0566 2.8628 0.2551 21 6 4.1876 3.6551 -0.8701 22 6 4.6345 4.9576 -0.7501 23 6 4.9590 5.4652 0.4942 24 6 4.8329 4.6712 1.6188 25 6 4.3820 3.3700 1.4992 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.6059 1.9813 0.8422 32 1 1.7511 1.9301 -0.9310 33 1 4.1903 1.4873 -1.8362 34 1 6.1670 1.1038 -0.5337 35 1 5.4259 -0.4015 0.0607 36 1 4.0734 -1.2010 -2.5741 37 1 5.4383 -2.1339 -3.2341 38 1 5.0002 -2.2920 -1.5164 39 1 6.7817 1.3260 -2.9452 40 1 6.4788 -0.0208 -4.0686 41 1 5.1137 0.9118 -3.4085 42 1 8.0826 -0.2064 -1.4600 43 1 7.3408 -1.7113 -0.8659 44 1 10.4897 -3.4154 -3.9138 45 1 3.9379 3.2573 -1.8426 46 1 4.7326 5.5780 -1.6286 47 1 5.3107 6.4820 0.5876 48 1 5.0869 5.0676 2.5908 49 1 4.2835 2.7498 2.3779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229683037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -20.172441 kcal Electronic energy + Delta-G solvation = -23671.064370 eV Core-core repulsion = 20596.011335 eV Total energy + Delta-G solvation = -3075.053036 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71750 -38.97746 -37.11627 -34.79825 -33.97633 -31.95705 -31.60259 -29.67525 -28.83637 -27.90365 -26.44064 -24.72017 -23.95833 -23.20554 -22.07460 -21.19542 -19.42278 -18.86674 -18.03962 -16.73702 -16.40010 -16.20683 -15.86521 -15.67381 -15.52600 -15.12156 -14.72730 -14.60410 -14.35377 -14.22749 -14.01541 -13.93807 -13.63703 -13.48710 -13.00150 -12.83453 -12.77658 -12.52234 -12.43023 -12.33629 -12.20864 -12.09819 -11.93254 -11.76621 -11.69156 -11.58212 -11.35681 -11.31348 -10.96366 -10.79449 -10.69939 -9.81847 -9.60464 -9.25186 -8.21697 -6.21570 0.45417 0.50623 1.34625 1.36231 1.47228 2.39009 2.88609 3.13360 3.29496 3.71258 3.96927 4.12327 4.15460 4.18972 4.27937 4.28515 4.32991 4.35175 4.43760 4.53343 4.65365 4.70687 4.77086 4.82095 4.89082 4.93325 4.96251 5.04812 5.06625 5.11058 5.12302 5.16329 5.18329 5.20595 5.36105 5.38215 5.46130 5.51093 5.54751 5.58266 5.59446 5.63228 5.66803 5.67343 5.78554 5.83626 6.12876 6.19672 6.42662 6.54618 6.85565 7.40863 8.94555 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.004395 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.339481 B = 6369.679607 C = 7533.313008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.089 4.089 4 C 0.127 3.873 5 H 0.080 0.920 6 N -0.668 5.668 7 C 0.085 3.915 8 C -0.045 4.045 9 C -0.106 4.106 10 C -0.122 4.122 11 C -0.003 4.003 12 C -0.502 4.502 13 H 0.045 0.955 14 C 0.003 3.997 15 N -0.954 5.954 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.253 1.253 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.342 0.658 34 H 0.017 0.983 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.008 0.992 43 H 0.010 0.990 44 H 0.262 0.738 45 H 0.124 0.876 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 15.881 12.198 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.127 4.127 4 C 0.017 3.983 5 H 0.098 0.902 6 N -0.300 5.300 7 C -0.045 4.045 8 C -0.046 4.046 9 C -0.164 4.164 10 C -0.179 4.179 11 C -0.040 4.040 12 C -0.540 4.540 13 H 0.063 0.937 14 C -0.193 4.193 15 N -0.596 5.596 16 Si 0.763 3.237 17 H -0.195 1.195 18 H -0.214 1.214 19 H -0.177 1.177 20 C -0.117 4.117 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.142 0.858 46 H 0.153 0.847 47 H 0.157 0.843 48 H 0.157 0.843 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.510 15.170 12.217 25.534 hybrid contribution 1.654 0.393 0.216 1.714 sum -14.856 15.562 12.433 24.849 Atomic orbital electron populations 1.21767 0.95645 1.01563 1.01702 1.21378 0.95425 0.96345 1.02017 1.21467 0.92055 0.97280 1.01880 1.20688 0.95440 0.88424 0.93783 0.90180 1.60725 1.21998 1.39903 1.07357 1.21822 0.88834 0.96782 0.97040 1.20318 0.94423 0.95311 0.94539 1.21492 0.98407 0.96800 0.99678 1.21663 1.00313 0.97959 0.97952 1.19591 0.94117 0.95031 0.95306 1.21422 1.01391 1.31643 0.99549 0.93666 1.25885 0.99343 0.95036 0.99037 1.70058 1.19974 1.38018 1.31526 0.85830 0.77684 0.79699 0.80444 1.19525 1.21376 1.17651 1.20839 0.99377 0.97594 0.93929 1.21101 1.00578 0.94641 0.98476 1.21399 0.98872 0.95635 0.98489 1.21453 1.00197 1.00844 0.92653 1.21442 0.99208 0.94119 0.99625 1.21283 0.99725 0.96352 0.97235 0.92526 0.92840 0.92864 0.91995 0.92891 0.91392 0.92070 0.83627 0.96492 0.91706 0.91275 0.95505 0.94388 0.94206 0.94547 0.91587 0.97357 0.97154 0.92902 0.85838 0.84692 0.84339 0.84350 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.70 16 2 C -0.11 -2.18 5.77 30.60 0.18 -2.00 16 3 C -0.09 -1.63 4.87 30.59 0.15 -1.48 16 4 C 0.13 2.69 2.22 44.17 0.10 2.78 16 5 H 0.08 1.76 7.59 -2.38 -0.02 1.74 16 6 N -0.67 -16.59 4.92 -495.45 -2.44 -19.03 16 7 C 0.08 2.62 4.46 86.30 0.38 3.00 16 8 C -0.05 -1.72 0.60 -52.18 -0.03 -1.75 16 9 C -0.11 -4.02 8.06 71.98 0.58 -3.44 16 10 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 11 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 12 C -0.50 -28.52 8.20 25.60 0.21 -28.31 16 13 H 0.05 2.81 5.92 -2.91 -0.02 2.79 16 14 C 0.00 0.16 5.47 84.66 0.46 0.62 16 15 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 16 Si 0.94 45.37 27.47 68.60 1.88 47.25 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 20 C -0.12 -2.47 4.75 -19.87 -0.09 -2.56 16 21 C -0.13 -2.73 9.13 22.27 0.20 -2.53 16 22 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 23 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 24 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 25 C -0.13 -2.54 9.67 22.27 0.22 -2.32 16 26 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.40 7.90 -2.39 -0.02 1.38 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.34 8.27 4.62 -89.69 -0.41 7.85 16 34 H 0.02 0.55 8.07 -2.39 -0.02 0.53 16 35 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 36 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 37 H 0.03 1.16 6.62 -2.39 -0.02 1.14 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 41 H 0.07 1.98 6.70 -2.39 -0.02 1.96 16 42 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 43 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 44 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.12 2.44 6.49 -2.91 -0.02 2.42 16 46 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 47 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 48 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 49 H 0.13 2.21 8.04 -2.91 -0.02 2.18 16 Total: -1.00 -64.61 377.83 4.57 -60.04 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.42 Total: 21.89 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 4.40 Total: -50.02 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.14 Total: -79.15 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Total: -64.61 4.57 -60.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229683037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.869 kcal (2) G-P(sol) polarization free energy of solvation -64.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds