Wall clock time and date at job start Tue Mar 31 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99964 * 2 1 4 4 C 1.38211 * 119.99774 * 180.21331 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.52161 * 4 3 2 6 6 C 1.50702 * 120.00325 * 180.25725 * 5 4 3 7 7 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 8 8 C 1.50700 * 120.00244 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46803 * 324.99456 * 8 7 5 10 10 C 1.52998 * 109.47390 * 84.99352 * 8 7 5 11 11 N 1.46903 * 109.47020 * 205.00032 * 8 7 5 12 12 C 1.46903 * 111.00117 * 154.99840 * 11 8 7 13 13 C 1.52997 * 109.46803 * 179.97438 * 12 11 8 14 14 C 1.52998 * 109.47182 * 299.99556 * 13 12 11 15 15 C 1.52997 * 109.47582 * 60.00041 * 13 12 11 16 16 C 1.53001 * 109.46758 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.47259 * 180.02562 * 16 13 12 18 18 H 1.08001 * 120.00008 * 359.97438 * 17 16 13 19 19 C 1.37872 * 120.00211 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00178 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47336 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46735 * 119.99929 * 21 19 17 24 24 H 1.48499 * 109.46941 * 239.99452 * 21 19 17 25 25 C 1.38211 * 119.99823 * 179.77787 * 2 1 3 26 26 H 1.09001 * 109.47235 * 270.21618 * 1 2 3 27 27 H 1.08998 * 109.46741 * 30.21621 * 1 2 3 28 28 H 1.09000 * 109.47220 * 150.21894 * 1 2 3 29 29 H 1.07998 * 119.99848 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.00200 * 179.80765 * 4 3 2 31 31 H 1.09002 * 109.46776 * 89.99934 * 6 5 4 32 32 H 1.08993 * 109.47429 * 210.00606 * 6 5 4 33 33 H 1.08998 * 109.46961 * 330.00857 * 6 5 4 34 34 H 1.08996 * 109.47164 * 179.97438 * 10 8 7 35 35 H 1.08994 * 109.47243 * 300.00266 * 10 8 7 36 36 H 1.09002 * 109.47062 * 60.00262 * 10 8 7 37 37 H 1.00903 * 110.99771 * 278.94795 * 11 8 7 38 38 H 1.08998 * 109.46768 * 299.99746 * 12 11 8 39 39 H 1.08996 * 109.46863 * 59.99592 * 12 11 8 40 40 H 1.09004 * 109.47112 * 60.00277 * 14 13 12 41 41 H 1.08997 * 109.47023 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.47112 * 300.00536 * 14 13 12 43 43 H 1.08998 * 109.47130 * 59.99335 * 15 13 12 44 44 H 1.08997 * 109.47338 * 179.97438 * 15 13 12 45 45 H 1.09004 * 109.46728 * 299.99733 * 15 13 12 46 46 H 1.08998 * 109.46830 * 299.99977 * 16 13 12 47 47 H 1.09003 * 109.47194 * 59.99673 * 16 13 12 48 48 H 0.96996 * 120.00173 * 180.02562 * 20 19 17 49 49 H 1.08001 * 120.00392 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0045 5 6 4.2717 0.0000 0.0011 6 6 5.7787 -0.0001 0.0021 7 6 3.5807 -1.1970 0.0051 8 6 4.3342 -2.5021 0.0105 9 1 5.2452 -2.3981 -0.5787 10 6 4.6971 -2.8755 1.4492 11 7 3.4923 -3.5560 -0.5715 12 6 4.3141 -4.6396 -1.1268 13 6 3.4041 -5.7160 -1.7218 14 6 2.4935 -6.2762 -0.6273 15 6 2.5488 -5.1039 -2.8329 16 6 4.2600 -6.8444 -2.3008 17 6 3.3638 -7.9044 -2.8874 18 1 2.2910 -7.7854 -2.8506 19 6 3.9133 -9.0266 -3.4702 20 7 5.2196 -9.1717 -3.5146 21 14 2.8023 -10.3408 -4.1968 22 1 1.3828 -9.9423 -4.0198 23 1 3.0973 -10.4935 -5.6442 24 1 3.0437 -11.6317 -3.5035 25 6 2.1981 -1.1970 0.0046 26 1 -0.3634 0.0039 1.0277 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3634 -0.8919 -0.5104 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 -0.0076 31 1 6.1413 0.0043 1.0300 32 1 6.1424 -0.8921 -0.5078 33 1 6.1424 0.8877 -0.5151 34 1 5.2417 -3.8197 1.4531 35 1 5.3218 -2.0936 1.8809 36 1 3.7861 -2.9795 2.0384 37 1 2.8365 -3.9114 0.1081 38 1 4.9631 -4.2405 -1.9062 39 1 4.9230 -5.0760 -0.3351 40 1 1.8838 -5.4721 -0.2152 41 1 1.8456 -7.0433 -1.0511 42 1 3.1029 -6.7123 0.1643 43 1 3.1975 -4.7048 -3.6127 44 1 1.9009 -5.8708 -3.2571 45 1 1.9391 -4.2998 -2.4208 46 1 4.9084 -6.4450 -3.0806 47 1 4.8697 -7.2806 -1.5095 48 1 5.6062 -9.9610 -3.9250 49 1 1.6581 -2.1323 0.0078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229686024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:22 Heat of formation + Delta-G solvation = -8.026366 kcal Electronic energy + Delta-G solvation = -23464.942587 eV Core-core repulsion = 20390.416245 eV Total energy + Delta-G solvation = -3074.526342 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91337 -37.74189 -35.49896 -33.73801 -32.37599 -30.68831 -29.34304 -28.88341 -26.85822 -26.30654 -25.23673 -24.88482 -23.66510 -22.47191 -21.01024 -19.87992 -17.87343 -16.27944 -15.97496 -15.92951 -15.16478 -14.80582 -14.51270 -14.15629 -14.01500 -13.96396 -13.41418 -13.17929 -13.09789 -12.88846 -12.81002 -12.64111 -12.46433 -12.01445 -11.96556 -11.91255 -11.73845 -11.51165 -11.41608 -10.98379 -10.88981 -10.86232 -10.73678 -10.59130 -10.47341 -10.23605 -10.07995 -9.67032 -9.01252 -8.81606 -8.66456 -8.38731 -8.30759 -8.04263 -5.95133 -3.95032 1.36528 1.47202 3.33152 3.41050 3.44568 3.74508 4.38761 4.51936 4.74634 4.81766 4.87957 5.03691 5.10158 5.19317 5.31433 5.37929 5.40861 5.47096 5.50504 5.54476 5.60869 5.69113 5.75067 5.79091 5.82209 5.84555 5.93991 5.98827 6.06689 6.19084 6.20398 6.29235 6.36132 6.47869 6.52909 6.64988 6.68928 6.71462 6.82976 6.85539 7.07705 7.23077 7.26832 7.28860 7.44140 7.68275 7.73007 7.87526 8.05478 8.50060 9.10661 9.67823 11.16605 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.003316 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.561446 B = 8443.014769 C = 9067.013930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.059 4.059 8 C 0.117 3.883 9 H 0.088 0.912 10 C -0.176 4.176 11 N -0.679 5.679 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.128 4.128 15 C -0.116 4.116 16 C 0.034 3.966 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.091 4.091 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.338 0.662 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.258 0.742 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.744 19.769 9.918 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.093 4.093 6 C -0.173 4.173 7 C -0.060 4.060 8 C 0.007 3.993 9 H 0.106 0.894 10 C -0.235 4.235 11 N -0.310 5.310 12 C -0.058 4.058 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.173 4.173 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.109 4.109 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.158 0.842 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.068 0.932 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.685 19.956 9.247 22.301 hybrid contribution -0.110 -1.228 0.339 1.279 sum -3.795 18.728 9.586 21.378 Atomic orbital electron populations 1.20765 0.91513 1.02702 1.01948 1.19905 0.95909 0.93247 1.00576 1.20919 0.94120 0.97286 1.02124 1.20886 0.94115 0.97117 1.01728 1.19677 0.95786 0.92649 1.01159 1.20840 0.91648 1.02803 1.02018 1.19691 0.93756 0.93695 0.98847 1.20475 0.95375 0.89498 0.93935 0.89420 1.22448 1.01948 1.01825 0.97236 1.60692 1.18493 1.12915 1.38888 1.22136 0.95118 0.90923 0.97622 1.20620 0.95620 0.94584 0.94989 1.21766 0.99240 0.99606 0.97962 1.21594 0.99149 0.99115 0.97434 1.19123 0.94375 0.91421 0.95458 1.21280 0.93144 1.03512 1.36431 0.92244 1.25016 0.94843 0.98306 0.96466 1.69975 1.09904 1.28484 1.45415 0.86617 0.81058 0.81945 0.78873 1.19772 1.21159 1.21219 1.20866 0.93585 0.97484 0.98963 0.91566 0.91916 0.91389 0.86676 0.86555 0.91437 0.91186 0.91857 0.92071 0.92214 0.92480 0.84195 0.91621 0.95744 0.94886 0.91743 0.94128 0.94220 0.92762 0.93895 0.96709 0.96955 0.93247 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.10 -1.09 5.88 -104.62 -0.62 -1.71 16 3 C -0.13 -1.35 9.70 -39.58 -0.38 -1.73 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.09 -1.06 5.88 -104.62 -0.62 -1.67 16 6 C -0.12 -1.09 9.38 36.01 0.34 -0.76 16 7 C -0.06 -0.74 5.06 -104.62 -0.53 -1.27 16 8 C 0.12 1.47 2.30 -68.86 -0.16 1.31 16 9 H 0.09 1.14 5.82 -51.93 -0.30 0.83 16 10 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 11 N -0.68 -9.69 4.47 -107.95 -0.48 -10.17 16 12 C 0.07 1.20 4.45 -3.82 -0.02 1.18 16 13 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 14 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 15 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 16 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 17 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.09 -1.14 8.98 -39.58 -0.36 -1.49 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.68 6.03 -51.93 -0.31 0.37 16 33 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 35 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 36 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 37 H 0.34 4.64 5.94 -39.29 -0.23 4.40 16 38 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 39 H 0.02 0.42 7.43 -51.93 -0.39 0.03 16 40 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 41 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 45 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.13 1.57 6.89 -52.49 -0.36 1.21 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -29.49 377.09 -9.81 -39.30 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.73 Total: 1.98 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -1.99 Total: -27.25 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.25 Total: -36.33 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.49 -9.81 -39.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229686024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.271 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds