Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99964 * 2 1 4 4 C 1.38211 * 119.99774 * 180.21331 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.52161 * 4 3 2 6 6 C 1.50702 * 120.00325 * 180.25725 * 5 4 3 7 7 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 8 8 C 1.50700 * 120.00244 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46803 * 324.99456 * 8 7 5 10 10 C 1.52998 * 109.47390 * 84.99352 * 8 7 5 11 11 N 1.46903 * 109.47020 * 205.00032 * 8 7 5 12 12 C 1.46903 * 111.00117 * 154.99840 * 11 8 7 13 13 C 1.52997 * 109.46803 * 179.97438 * 12 11 8 14 14 C 1.52998 * 109.47182 * 299.99556 * 13 12 11 15 15 C 1.52997 * 109.47582 * 60.00041 * 13 12 11 16 16 C 1.53001 * 109.46758 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.47259 * 180.02562 * 16 13 12 18 18 H 1.08001 * 120.00008 * 359.97438 * 17 16 13 19 19 C 1.37872 * 120.00211 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00178 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47336 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46735 * 119.99929 * 21 19 17 24 24 H 1.48499 * 109.46941 * 239.99452 * 21 19 17 25 25 C 1.38211 * 119.99823 * 179.77787 * 2 1 3 26 26 H 1.09001 * 109.47235 * 270.21618 * 1 2 3 27 27 H 1.08998 * 109.46741 * 30.21621 * 1 2 3 28 28 H 1.09000 * 109.47220 * 150.21894 * 1 2 3 29 29 H 1.07998 * 119.99848 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.00200 * 179.80765 * 4 3 2 31 31 H 1.09002 * 109.46776 * 89.99934 * 6 5 4 32 32 H 1.08993 * 109.47429 * 210.00606 * 6 5 4 33 33 H 1.08998 * 109.46961 * 330.00857 * 6 5 4 34 34 H 1.08996 * 109.47164 * 179.97438 * 10 8 7 35 35 H 1.08994 * 109.47243 * 300.00266 * 10 8 7 36 36 H 1.09002 * 109.47062 * 60.00262 * 10 8 7 37 37 H 1.00903 * 110.99771 * 278.94795 * 11 8 7 38 38 H 1.08998 * 109.46768 * 299.99746 * 12 11 8 39 39 H 1.08996 * 109.46863 * 59.99592 * 12 11 8 40 40 H 1.09004 * 109.47112 * 60.00277 * 14 13 12 41 41 H 1.08997 * 109.47023 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.47112 * 300.00536 * 14 13 12 43 43 H 1.08998 * 109.47130 * 59.99335 * 15 13 12 44 44 H 1.08997 * 109.47338 * 179.97438 * 15 13 12 45 45 H 1.09004 * 109.46728 * 299.99733 * 15 13 12 46 46 H 1.08998 * 109.46830 * 299.99977 * 16 13 12 47 47 H 1.09003 * 109.47194 * 59.99673 * 16 13 12 48 48 H 0.96996 * 120.00173 * 180.02562 * 20 19 17 49 49 H 1.08001 * 120.00392 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0045 5 6 4.2717 0.0000 0.0011 6 6 5.7787 -0.0001 0.0021 7 6 3.5807 -1.1970 0.0051 8 6 4.3342 -2.5021 0.0105 9 1 5.2452 -2.3981 -0.5787 10 6 4.6971 -2.8755 1.4492 11 7 3.4923 -3.5560 -0.5715 12 6 4.3141 -4.6396 -1.1268 13 6 3.4041 -5.7160 -1.7218 14 6 2.4935 -6.2762 -0.6273 15 6 2.5488 -5.1039 -2.8329 16 6 4.2600 -6.8444 -2.3008 17 6 3.3638 -7.9044 -2.8874 18 1 2.2910 -7.7854 -2.8506 19 6 3.9133 -9.0266 -3.4702 20 7 5.2196 -9.1717 -3.5146 21 14 2.8023 -10.3408 -4.1968 22 1 1.3828 -9.9423 -4.0198 23 1 3.0973 -10.4935 -5.6442 24 1 3.0437 -11.6317 -3.5035 25 6 2.1981 -1.1970 0.0046 26 1 -0.3634 0.0039 1.0277 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3634 -0.8919 -0.5104 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 -0.0076 31 1 6.1413 0.0043 1.0300 32 1 6.1424 -0.8921 -0.5078 33 1 6.1424 0.8877 -0.5151 34 1 5.2417 -3.8197 1.4531 35 1 5.3218 -2.0936 1.8809 36 1 3.7861 -2.9795 2.0384 37 1 2.8365 -3.9114 0.1081 38 1 4.9631 -4.2405 -1.9062 39 1 4.9230 -5.0760 -0.3351 40 1 1.8838 -5.4721 -0.2152 41 1 1.8456 -7.0433 -1.0511 42 1 3.1029 -6.7123 0.1643 43 1 3.1975 -4.7048 -3.6127 44 1 1.9009 -5.8708 -3.2571 45 1 1.9391 -4.2998 -2.4208 46 1 4.9084 -6.4450 -3.0806 47 1 4.8697 -7.2806 -1.5095 48 1 5.6062 -9.9610 -3.9250 49 1 1.6581 -2.1323 0.0078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229686024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = -21.697715 kcal Electronic energy + Delta-G solvation = -23465.535421 eV Core-core repulsion = 20390.416245 eV Total energy + Delta-G solvation = -3075.119177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80482 -39.14932 -36.76222 -34.78429 -34.22623 -31.81155 -30.09307 -29.93968 -28.76846 -27.88759 -26.68754 -25.70216 -24.80534 -24.08897 -21.98168 -20.81946 -19.46537 -18.32963 -17.00564 -16.93588 -16.47591 -16.18675 -15.84139 -15.25371 -15.19652 -15.00082 -14.54774 -14.43856 -14.31234 -14.08793 -13.88504 -13.81925 -13.52744 -13.37713 -13.30197 -12.93378 -12.80418 -12.69346 -12.66364 -12.49144 -12.40477 -12.25519 -12.17790 -12.12832 -11.90928 -11.66942 -11.45247 -11.38055 -10.85672 -10.71198 -10.50751 -9.54659 -9.32204 -9.12458 -8.13753 -6.20518 0.52899 0.61867 1.39977 1.41128 1.53223 2.43867 2.89697 3.20313 3.26737 3.84425 4.00663 4.08870 4.13693 4.20449 4.24482 4.29225 4.35620 4.39822 4.46714 4.57891 4.69148 4.75664 4.77693 4.83834 4.86302 4.88559 4.92335 4.96603 5.01468 5.04205 5.08871 5.15346 5.20389 5.22112 5.23843 5.35642 5.44592 5.52619 5.54800 5.59073 5.62398 5.67076 5.81055 5.85080 5.88508 5.93628 6.16656 6.27575 6.38509 6.54095 6.94897 7.46836 8.98824 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.003316 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.561446 B = 8443.014769 C = 9067.013930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.104 4.104 6 C -0.115 4.115 7 C -0.074 4.074 8 C 0.120 3.880 9 H 0.081 0.919 10 C -0.169 4.169 11 N -0.675 5.675 12 C 0.085 3.915 13 C -0.054 4.054 14 C -0.121 4.121 15 C -0.106 4.106 16 C 0.041 3.959 17 C -0.512 4.512 18 H 0.066 0.934 19 C -0.005 4.005 20 N -0.938 5.938 21 Si 0.955 3.045 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.108 4.108 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.344 0.656 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.038 0.962 45 H 0.066 0.934 46 H -0.017 1.017 47 H -0.015 1.015 48 H 0.259 0.741 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 21.347 10.697 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.104 4.104 6 C -0.172 4.172 7 C -0.075 4.075 8 C 0.011 3.989 9 H 0.099 0.901 10 C -0.228 4.228 11 N -0.306 5.306 12 C -0.044 4.044 13 C -0.054 4.054 14 C -0.178 4.178 15 C -0.163 4.163 16 C 0.003 3.997 17 C -0.551 4.551 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.185 1.185 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.127 4.127 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.164 0.836 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.001 0.999 47 H 0.003 0.997 48 H 0.068 0.932 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.241 21.548 10.037 24.342 hybrid contribution 0.393 -1.632 0.111 1.682 sum -4.848 19.917 10.148 22.872 Atomic orbital electron populations 1.20788 0.90066 1.03143 1.02747 1.20200 0.97153 0.93129 1.00164 1.21242 0.94392 0.97976 1.01333 1.21199 0.94450 0.97710 1.00976 1.19936 0.96822 0.92624 1.01020 1.20860 0.90496 1.03025 1.02792 1.19717 0.93958 0.93773 1.00053 1.20454 0.94876 0.89105 0.94486 0.90086 1.22371 1.02216 1.01816 0.96381 1.60604 1.18404 1.12038 1.39601 1.21813 0.94523 0.90897 0.97213 1.20478 0.95552 0.93705 0.95681 1.21673 0.98856 1.00140 0.97167 1.21491 0.98721 0.99164 0.96934 1.19000 0.94149 0.92831 0.93715 1.21652 0.93692 1.03902 1.35812 0.91617 1.25913 0.96216 1.00872 0.97122 1.70113 1.11833 1.29356 1.46653 0.85536 0.79571 0.78924 0.77873 1.18458 1.20897 1.20792 1.20957 0.93733 0.97943 1.00037 0.90539 0.90706 0.91717 0.84569 0.84480 0.90334 0.91973 0.90627 0.92810 0.90952 0.92123 0.83593 0.92828 0.96037 0.91514 0.93493 0.94365 0.95375 0.94314 0.91519 0.99900 0.99701 0.93192 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.24 0.71 -1.05 16 2 C -0.11 -2.22 5.88 -19.86 -0.12 -2.33 16 3 C -0.13 -2.49 9.70 22.27 0.22 -2.28 16 4 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 5 C -0.10 -2.20 5.88 -19.86 -0.12 -2.32 16 6 C -0.12 -1.98 9.38 71.24 0.67 -1.31 16 7 C -0.07 -1.77 5.06 -19.86 -0.10 -1.87 16 8 C 0.12 2.92 2.30 44.17 0.10 3.03 16 9 H 0.08 2.08 5.82 -2.39 -0.01 2.06 16 10 C -0.17 -3.58 9.14 71.98 0.66 -2.92 16 11 N -0.67 -18.66 4.47 -495.45 -2.21 -20.87 16 12 C 0.08 2.90 4.45 86.30 0.38 3.28 16 13 C -0.05 -2.14 0.60 -52.18 -0.03 -2.17 16 14 C -0.12 -4.34 7.89 71.98 0.57 -3.78 16 15 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 16 C 0.04 2.12 4.04 29.85 0.12 2.24 16 17 C -0.51 -28.51 7.65 25.60 0.20 -28.32 16 18 H 0.07 3.51 5.68 -2.91 -0.02 3.50 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 21 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 C -0.11 -2.57 8.98 22.27 0.20 -2.37 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 28 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 30 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.16 6.03 -2.39 -0.01 1.14 16 33 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 35 H 0.07 1.34 7.92 -2.39 -0.02 1.32 16 36 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 37 H 0.34 8.87 5.94 -89.69 -0.53 8.33 16 38 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 39 H 0.02 0.74 7.43 -2.39 -0.02 0.73 16 40 H 0.07 1.93 6.57 -2.39 -0.02 1.92 16 41 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 45 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 46 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 49 H 0.12 2.88 6.89 -2.91 -0.02 2.86 16 Total: -1.00 -64.09 377.09 5.19 -58.90 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.37 Total: 20.28 kcal Atomic # 6 Polarization: -52.40 SS G_CDS: 4.72 Total: -47.68 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.93 Total: -78.24 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.09 5.19 -58.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229686024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.199 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds