Wall clock time and date at job start Tue Mar 31 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99653 * 2 1 4 4 H 1.48495 * 109.47180 * 239.99967 * 3 2 1 5 5 H 1.48497 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47213 * 119.99833 * 3 2 1 7 7 C 1.38800 * 120.00753 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00464 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99605 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99790 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47356 * 180.02562 * 11 10 9 13 13 S 1.81403 * 109.46961 * 180.02562 * 12 11 10 14 14 C 1.76201 * 102.99843 * 179.97438 * 13 12 11 15 15 C 1.39555 * 120.15196 * 179.97438 * 14 13 12 16 16 C 1.38497 * 117.91462 * 179.97438 * 15 14 13 17 17 C 1.38978 * 118.03363 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 120.00161 * 180.02562 * 17 16 15 19 19 N 1.31874 * 119.99420 * 359.97438 * 17 16 15 20 20 N 1.28354 * 122.27320 * 359.97438 * 19 17 16 21 21 H 0.96994 * 120.00622 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47774 * 59.99893 * 10 9 7 23 23 H 1.09003 * 109.47160 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.47523 * 59.99738 * 11 10 9 25 25 H 1.09007 * 109.47086 * 299.99828 * 11 10 9 26 26 H 1.08997 * 109.47240 * 59.99869 * 12 11 10 27 27 H 1.08999 * 109.46518 * 299.99364 * 12 11 10 28 28 H 1.08001 * 121.03875 * 0.02562 * 15 14 13 29 29 H 1.08004 * 120.98144 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9797 -5.3241 0.0012 12 6 3.1519 -6.3076 0.0018 13 16 2.5158 -8.0064 0.0018 14 6 3.9847 -8.9796 0.0018 15 6 3.9025 -10.3727 0.0024 16 6 5.0861 -11.0920 0.0018 17 6 6.2814 -10.3829 0.0013 18 17 7.7950 -11.2330 -0.0001 19 7 6.2656 -9.0642 0.0008 20 7 5.1723 -8.3919 0.0003 21 1 -0.4851 0.8399 -0.0004 22 1 3.1248 -3.7312 0.8905 23 1 3.1247 -3.7312 -0.8895 24 1 1.3708 -5.4846 -0.8885 25 1 1.3714 -5.4840 0.8915 26 1 3.7604 -6.1470 0.8918 27 1 3.7604 -6.1479 -0.8882 28 1 2.9460 -10.8742 0.0024 29 1 5.0803 -12.1720 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267067389.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:03 Heat of formation + Delta-G solvation = 31.082888 kcal Electronic energy + Delta-G solvation = -14788.138273 eV Core-core repulsion = 11989.622438 eV Total energy + Delta-G solvation = -2798.515835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 290.001 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31681 -37.29869 -34.46977 -33.75500 -32.71414 -32.44441 -27.23619 -25.54648 -25.32498 -24.95859 -21.51378 -18.69736 -17.97298 -17.54986 -17.50109 -15.86609 -15.44777 -15.23914 -14.81404 -14.50996 -14.16696 -13.87341 -13.10330 -13.00158 -12.53561 -12.32408 -12.00858 -11.85676 -11.47267 -11.07529 -11.01689 -10.95192 -10.68473 -10.68172 -10.67998 -10.43805 -10.12110 -9.61380 -9.06590 -8.36241 -8.01994 -6.56523 -6.24419 -3.95627 0.14210 0.23279 0.88294 1.28800 1.96719 2.86231 3.21579 3.23555 3.27904 3.52905 3.81974 3.95870 4.09461 4.20452 4.30274 4.87121 4.99242 5.08261 5.12084 5.18405 5.32880 5.35787 5.53746 5.70683 5.90734 6.16872 6.40295 6.62356 7.59312 8.01904 8.35113 9.22015 10.83721 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.002487 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.571315 B =11256.223037 C =12026.045800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.128 6.128 10 C -0.109 4.109 11 C -0.086 4.086 12 C -0.096 4.096 13 S -0.029 6.029 14 C 0.057 3.943 15 C -0.088 4.088 16 C -0.088 4.088 17 C 0.099 3.901 18 Cl -0.009 7.009 19 N -0.215 5.215 20 N -0.230 5.230 21 H 0.268 0.732 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.165 0.835 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -24.781 0.005 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.666 4.666 8 H 0.091 0.909 9 S 0.100 5.900 10 C -0.260 4.260 11 C -0.126 4.126 12 C -0.246 4.246 13 S 0.211 5.789 14 C -0.198 4.198 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.077 4.077 18 Cl 0.019 6.981 19 N -0.059 5.059 20 N -0.077 5.077 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.183 0.817 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.133 -23.779 0.004 24.826 hybrid contribution 2.626 0.205 0.001 2.634 sum 9.760 -23.574 0.005 25.514 Atomic orbital electron populations 1.70001 1.05931 1.27519 1.47092 1.25005 0.95074 0.99085 0.94489 0.86218 0.79246 0.81144 0.78914 1.19896 1.20791 1.19889 1.22654 0.94557 0.90659 1.58779 0.90873 1.84621 1.09038 0.99407 1.96906 1.23247 1.03241 0.96058 1.03447 1.21106 0.95351 0.92136 1.03973 1.23844 1.02638 0.90801 1.07271 1.85749 1.02253 1.02102 1.88807 1.25166 1.00024 0.96538 0.98048 1.22057 1.00294 0.92253 0.97588 1.22133 0.90437 1.02640 0.96703 1.23372 0.89360 0.92551 1.02418 1.98427 1.29495 1.73753 1.96422 1.72712 1.20510 1.05143 1.07534 1.73781 0.93433 1.28556 1.11979 0.92200 0.91679 0.91673 0.90406 0.90413 0.88494 0.88499 0.81719 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.81 13.22 55.49 0.73 -25.07 15 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 15 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -14.76 9.50 30.94 0.29 -14.46 15 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 15 9 S -0.13 -3.28 21.44 -107.50 -2.30 -5.58 15 10 C -0.11 -2.14 5.67 37.16 0.21 -1.93 15 11 C -0.09 -1.31 5.22 -26.73 -0.14 -1.45 15 12 C -0.10 -1.24 5.23 37.16 0.19 -1.05 15 13 S -0.03 -0.33 21.93 -107.50 -2.36 -2.68 15 14 C 0.06 0.63 7.08 -16.77 -0.12 0.52 15 15 C -0.09 -0.68 9.96 -39.00 -0.39 -1.07 15 16 C -0.09 -0.62 9.99 -39.21 -0.39 -1.02 15 17 C 0.10 0.98 7.37 -17.26 -0.13 0.86 15 18 Cl -0.01 -0.07 29.13 -51.86 -1.51 -1.58 15 19 N -0.21 -2.82 11.48 32.90 0.38 -2.44 15 20 N -0.23 -3.10 10.61 31.49 0.33 -2.76 15 21 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.06 1.26 8.14 -51.92 -0.42 0.84 15 23 H 0.06 1.26 8.14 -51.91 -0.42 0.84 15 24 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.08 1.18 8.14 -51.92 -0.42 0.76 15 26 H 0.10 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.10 1.28 8.14 -51.92 -0.42 0.86 15 28 H 0.17 0.75 8.06 -52.49 -0.42 0.33 15 29 H 0.16 0.55 8.06 -52.48 -0.42 0.12 15 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -31.83 305.28 -8.64 -40.47 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -2.93 Total: -3.74 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -0.56 Total: -17.64 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 1.45 Total: -30.28 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -4.66 Total: -8.27 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.83 -8.64 -40.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267067389.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.550 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds