Wall clock time and date at job start Tue Mar 31 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99653 * 2 1 4 4 H 1.48495 * 109.47180 * 239.99967 * 3 2 1 5 5 H 1.48497 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47213 * 119.99833 * 3 2 1 7 7 C 1.38800 * 120.00753 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00464 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99605 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99790 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47356 * 180.02562 * 11 10 9 13 13 S 1.81403 * 109.46961 * 180.02562 * 12 11 10 14 14 C 1.76201 * 102.99843 * 179.97438 * 13 12 11 15 15 C 1.39555 * 120.15196 * 179.97438 * 14 13 12 16 16 C 1.38497 * 117.91462 * 179.97438 * 15 14 13 17 17 C 1.38978 * 118.03363 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 120.00161 * 180.02562 * 17 16 15 19 19 N 1.31874 * 119.99420 * 359.97438 * 17 16 15 20 20 N 1.28354 * 122.27320 * 359.97438 * 19 17 16 21 21 H 0.96994 * 120.00622 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47774 * 59.99893 * 10 9 7 23 23 H 1.09003 * 109.47160 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.47523 * 59.99738 * 11 10 9 25 25 H 1.09007 * 109.47086 * 299.99828 * 11 10 9 26 26 H 1.08997 * 109.47240 * 59.99869 * 12 11 10 27 27 H 1.08999 * 109.46518 * 299.99364 * 12 11 10 28 28 H 1.08001 * 121.03875 * 0.02562 * 15 14 13 29 29 H 1.08004 * 120.98144 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9797 -5.3241 0.0012 12 6 3.1519 -6.3076 0.0018 13 16 2.5158 -8.0064 0.0018 14 6 3.9847 -8.9796 0.0018 15 6 3.9025 -10.3727 0.0024 16 6 5.0861 -11.0920 0.0018 17 6 6.2814 -10.3829 0.0013 18 17 7.7950 -11.2330 -0.0001 19 7 6.2656 -9.0642 0.0008 20 7 5.1723 -8.3919 0.0003 21 1 -0.4851 0.8399 -0.0004 22 1 3.1248 -3.7312 0.8905 23 1 3.1247 -3.7312 -0.8895 24 1 1.3708 -5.4846 -0.8885 25 1 1.3714 -5.4840 0.8915 26 1 3.7604 -6.1470 0.8918 27 1 3.7604 -6.1479 -0.8882 28 1 2.9460 -10.8742 0.0024 29 1 5.0803 -12.1720 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267067389.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:03 Heat of formation + Delta-G solvation = 11.933241 kcal Electronic energy + Delta-G solvation = -14788.968664 eV Core-core repulsion = 11989.622438 eV Total energy + Delta-G solvation = -2799.346226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 290.001 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.07567 -37.98432 -35.77261 -34.60187 -34.45607 -33.48663 -28.64654 -27.60309 -26.06096 -25.76901 -22.84875 -19.61634 -19.43704 -18.71829 -18.24908 -16.89443 -16.78510 -16.61810 -16.39225 -15.73338 -15.17581 -14.91008 -14.50875 -14.16379 -13.61819 -13.47183 -13.43670 -13.05766 -12.92330 -12.66903 -12.51958 -12.29422 -12.03817 -11.71455 -11.66942 -11.45624 -11.17508 -11.13875 -10.89013 -10.35457 -8.87453 -8.66874 -8.37748 -6.13996 -0.57856 -0.42826 0.05439 0.53544 1.01144 1.32231 1.40881 1.47634 1.74778 2.11526 2.27594 2.96750 3.10927 3.28255 3.29698 3.54862 3.70435 3.82198 3.93803 4.13387 4.24956 4.31691 4.61293 4.63502 4.76131 4.80474 4.99052 5.16746 5.39822 6.17757 7.04798 7.23707 8.71369 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.002487 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.571315 B =11256.223037 C =12026.045800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.991 3.009 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.072 0.928 9 S -0.186 6.186 10 C -0.088 4.088 11 C -0.074 4.074 12 C -0.093 4.093 13 S -0.005 6.005 14 C 0.040 3.960 15 C -0.077 4.077 16 C -0.073 4.073 17 C 0.093 3.907 18 Cl 0.001 6.999 19 N -0.257 5.257 20 N -0.267 5.267 21 H 0.272 0.728 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.202 0.798 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 -26.652 0.007 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.813 3.187 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.691 4.691 8 H 0.090 0.910 9 S 0.042 5.958 10 C -0.238 4.238 11 C -0.114 4.114 12 C -0.244 4.244 13 S 0.235 5.765 14 C -0.216 4.216 15 C -0.111 4.111 16 C -0.104 4.104 17 C -0.083 4.083 18 Cl 0.029 6.971 19 N -0.101 5.101 20 N -0.114 5.114 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.219 0.781 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.748 -25.654 0.005 26.798 hybrid contribution 2.502 0.578 0.001 2.568 sum 10.250 -25.075 0.006 27.090 Atomic orbital electron populations 1.70128 1.07607 1.28674 1.47821 1.26021 0.96004 1.02971 0.93673 0.85105 0.77994 0.76258 0.79315 1.19025 1.19832 1.19015 1.23028 0.94796 0.92107 1.59121 0.90962 1.84554 1.13326 1.00853 1.97060 1.23170 1.00533 0.96735 1.03385 1.20935 0.96120 0.90070 1.04227 1.23565 1.01364 0.92480 1.06977 1.85518 1.01826 0.99833 1.89323 1.25365 0.99251 0.98105 0.98880 1.22512 1.02183 0.90763 0.95631 1.22616 0.88800 1.04544 0.94405 1.23711 0.90882 0.92134 1.01613 1.98430 1.29199 1.73136 1.96315 1.72581 1.20870 1.06979 1.09637 1.73666 0.94234 1.29834 1.13623 0.91884 0.91669 0.91664 0.90155 0.90161 0.88868 0.88876 0.78066 0.77447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.50 13.22 21.65 0.29 -54.21 15 2 C 0.02 1.06 5.49 84.86 0.47 1.52 15 3 Si 0.99 44.03 29.55 68.60 2.03 46.06 15 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 7 C -0.54 -31.40 9.50 67.95 0.65 -30.75 15 8 H 0.07 4.04 7.80 -2.91 -0.02 4.01 15 9 S -0.19 -9.80 21.44 -56.49 -1.21 -11.01 15 10 C -0.09 -3.45 5.67 71.98 0.41 -3.05 15 11 C -0.07 -2.23 5.22 30.60 0.16 -2.07 15 12 C -0.09 -2.39 5.23 71.98 0.38 -2.02 15 13 S 0.00 -0.09 21.93 -56.49 -1.24 -1.33 15 14 C 0.04 0.82 7.08 84.91 0.60 1.42 15 15 C -0.08 -0.94 9.96 22.65 0.23 -0.72 15 16 C -0.07 -0.79 9.99 22.51 0.22 -0.56 15 17 C 0.09 1.69 7.37 84.86 0.63 2.32 15 18 Cl 0.00 0.02 29.13 -2.72 -0.08 -0.06 15 19 N -0.26 -6.65 11.48 -49.82 -0.57 -7.22 15 20 N -0.27 -7.09 10.61 -54.30 -0.58 -7.67 15 21 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 22 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.06 2.55 8.14 -2.39 -0.02 2.54 15 24 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.08 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 28 H 0.20 0.88 8.06 -2.91 -0.02 0.86 15 29 H 0.21 0.32 8.06 -2.91 -0.02 0.30 15 Total: -1.00 -70.79 305.28 3.53 -67.26 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.16 Total: 2.10 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 3.73 Total: -33.91 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -0.86 Total: -69.10 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -2.45 Total: -12.34 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.06 kcal Total: -70.79 3.53 -67.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267067389.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.189 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds