Wall clock time and date at job start Tue Mar 31 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47367 * 2 1 4 4 C 1.50696 * 109.47640 * 120.00123 * 2 1 3 5 5 H 1.07999 * 120.00109 * 119.99961 * 4 2 1 6 6 C 1.37882 * 119.99881 * 300.00230 * 4 2 1 7 7 N 1.31518 * 119.99933 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99994 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.47022 * 90.00377 * 8 6 4 10 10 H 1.48498 * 109.47402 * 209.99805 * 8 6 4 11 11 H 1.48493 * 109.47558 * 330.00209 * 8 6 4 12 12 N 1.46508 * 109.47194 * 240.00198 * 2 1 3 13 13 S 1.65595 * 119.99876 * 94.99693 * 12 2 1 14 14 O 1.42105 * 106.40149 * 178.54167 * 13 12 2 15 15 O 1.42098 * 106.40317 * 311.46040 * 13 12 2 16 16 C 1.76204 * 107.21987 * 65.00402 * 13 12 2 17 17 C 1.38235 * 120.40626 * 269.72252 * 16 13 12 18 18 N 1.31856 * 120.78946 * 179.70279 * 17 16 13 19 19 C 1.31879 * 121.73606 * 0.58475 * 18 17 16 20 20 C 1.38301 * 120.74783 * 359.70224 * 19 18 17 21 21 Cl 1.73599 * 120.43568 * 179.97438 * 20 19 18 22 22 C 1.38600 * 120.41319 * 89.99694 * 16 13 12 23 23 H 1.08996 * 109.47096 * 299.99670 * 1 2 3 24 24 H 1.08998 * 109.47567 * 60.00090 * 1 2 3 25 25 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 26 26 H 0.96993 * 119.99620 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00091 * 274.99665 * 12 2 1 28 28 H 1.07998 * 119.60753 * 359.97438 * 17 16 13 29 29 H 1.07996 * 119.62554 * 179.68262 * 19 18 17 30 30 H 1.07993 * 120.79986 * 359.97438 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3216 -1.1203 4.0078 9 1 3.6299 -0.5457 4.4123 10 1 1.3434 -0.9493 5.1120 11 1 2.4862 -2.5661 3.7119 12 7 2.0184 -0.6906 -1.1963 13 16 2.4121 0.1772 -2.5505 14 8 2.8776 -0.7634 -3.5086 15 8 1.3246 1.0593 -2.7921 16 6 3.7928 1.1911 -2.1372 17 6 3.6003 2.4652 -1.6367 18 7 4.6279 3.2281 -1.3195 19 6 5.8712 2.8170 -1.4752 20 6 6.1418 1.5566 -1.9759 21 17 7.7816 1.0240 -2.1782 22 6 5.0852 0.7231 -2.3153 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7090 1.1613 3.4844 27 1 2.1111 -1.6561 -1.1950 28 1 2.5962 2.8386 -1.4998 29 1 6.6874 3.4722 -1.2090 30 1 5.2657 -0.2665 -2.7081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269942695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:56 Heat of formation + Delta-G solvation = -48.784949 kcal Electronic energy + Delta-G solvation = -18993.368189 eV Core-core repulsion = 15748.636154 eV Total energy + Delta-G solvation = -3244.732035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25193 -36.96086 -36.79297 -35.57766 -35.49341 -32.76334 -32.30199 -31.31549 -28.39159 -25.30058 -24.30245 -23.83306 -21.06797 -19.32855 -18.02611 -17.55815 -16.91951 -16.67083 -16.22661 -15.32079 -15.12754 -14.65017 -14.43335 -13.67381 -13.44455 -12.93061 -12.74733 -12.31160 -12.23458 -11.84865 -11.80492 -11.67432 -11.53240 -11.29446 -11.23041 -11.05805 -10.65761 -10.40277 -10.30953 -10.17576 -9.71680 -9.30422 -9.23103 -8.72409 -8.42938 -6.22025 -4.31034 0.40412 0.81181 0.89706 1.79530 3.18931 3.24957 3.27016 3.29735 3.56602 4.08193 4.23620 4.27740 4.45148 4.57645 4.75819 4.90991 5.10060 5.27221 5.59983 5.67375 6.17054 6.21831 6.72020 6.95607 6.99623 7.47613 7.57307 7.60226 7.68263 7.94047 8.16336 8.72026 9.36251 10.83492 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.006585 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.100197 B = 4251.153796 C = 5235.319153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.273 3.727 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 N -1.095 6.095 13 S 2.695 3.305 14 O -0.975 6.975 15 O -0.953 6.953 16 C -0.712 4.712 17 C 0.212 3.788 18 N -0.479 5.479 19 C 0.162 3.838 20 C -0.116 4.116 21 Cl -0.052 7.052 22 C 0.037 3.963 23 H 0.093 0.907 24 H 0.027 0.973 25 H 0.034 0.966 26 H 0.266 0.734 27 H 0.412 0.588 28 H 0.182 0.818 29 H 0.170 0.830 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 1.366 -7.651 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.169 3.831 3 H 0.057 0.943 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.857 5.857 13 S 2.779 3.221 14 O -0.965 6.965 15 O -0.942 6.942 16 C -0.797 4.797 17 C 0.054 3.946 18 N -0.188 5.188 19 C 0.004 3.996 20 C -0.146 4.146 21 Cl -0.023 7.023 22 C 0.010 3.990 23 H 0.111 0.889 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.247 0.753 28 H 0.199 0.801 29 H 0.187 0.813 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.034 2.490 -7.984 11.597 hybrid contribution 1.334 -1.435 1.148 2.271 sum 9.368 1.055 -6.836 11.645 Atomic orbital electron populations 1.22239 0.97734 1.00169 1.01661 1.18585 0.91715 0.91981 0.80775 0.94283 1.21268 1.32329 1.13428 0.89948 0.91717 1.24912 0.94734 0.94984 0.99095 1.69863 1.35735 1.22455 1.24112 0.86480 0.78609 0.80011 0.82236 1.20624 1.20979 1.19764 1.55577 1.80240 1.18568 1.31323 1.01988 0.73508 0.73452 0.73149 1.93540 1.82356 1.61283 1.59314 1.93592 1.49482 1.67055 1.84116 1.32392 1.17336 1.12877 1.17139 1.22817 0.99348 0.87600 0.84845 1.68003 0.98826 1.35715 1.16222 1.23119 0.95150 0.91640 0.89714 1.22053 0.87283 0.97564 1.07675 1.98379 1.17677 1.90206 1.96051 1.21217 0.89600 0.99145 0.89075 0.88868 0.95407 0.94723 0.92422 0.75343 0.80079 0.81267 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.29 37.16 0.35 -3.26 16 2 C 0.27 6.17 2.76 -69.08 -0.19 5.98 16 3 H 0.04 0.92 7.27 -51.93 -0.38 0.54 16 4 C -0.53 -13.14 8.76 -34.44 -0.30 -13.44 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -23.36 11.32 55.43 0.63 -22.74 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -1.09 -20.40 5.46 -5.88 -0.03 -20.44 16 13 S 2.69 46.66 5.66 -107.50 -0.61 46.06 16 14 O -0.98 -17.56 17.36 -57.17 -0.99 -18.56 16 15 O -0.95 -18.52 16.56 -57.17 -0.95 -19.46 16 16 C -0.71 -11.50 5.83 -39.45 -0.23 -11.73 16 17 C 0.21 3.48 10.11 -17.54 -0.18 3.30 16 18 N -0.48 -7.54 10.36 -13.22 -0.14 -7.67 16 19 C 0.16 2.15 10.99 -17.51 -0.19 1.96 16 20 C -0.12 -1.55 6.34 -39.35 -0.25 -1.80 16 21 Cl -0.05 -0.58 28.99 -51.86 -1.50 -2.09 16 22 C 0.04 0.54 9.46 -39.24 -0.37 0.16 16 23 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 24 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.41 6.92 8.83 -34.47 -0.30 6.61 16 28 H 0.18 2.84 7.62 -52.49 -0.40 2.44 16 29 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.16 2.04 7.71 -52.49 -0.40 1.63 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -29.31 292.88 -8.25 -37.56 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.59 Total: 5.19 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.46 Total: -17.22 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.46 Total: -50.85 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.94 Total: -38.02 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 46.66 SS G_CDS: -0.61 Total: 46.06 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.31 -8.25 -37.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269942695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.222 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds