Wall clock time and date at job start Tue Mar 31 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47367 * 2 1 4 4 C 1.50696 * 109.47640 * 120.00123 * 2 1 3 5 5 H 1.07999 * 120.00109 * 119.99961 * 4 2 1 6 6 C 1.37882 * 119.99881 * 300.00230 * 4 2 1 7 7 N 1.31518 * 119.99933 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99994 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.47022 * 90.00377 * 8 6 4 10 10 H 1.48498 * 109.47402 * 209.99805 * 8 6 4 11 11 H 1.48493 * 109.47558 * 330.00209 * 8 6 4 12 12 N 1.46508 * 109.47194 * 240.00198 * 2 1 3 13 13 S 1.65595 * 119.99876 * 94.99693 * 12 2 1 14 14 O 1.42105 * 106.40149 * 178.54167 * 13 12 2 15 15 O 1.42098 * 106.40317 * 311.46040 * 13 12 2 16 16 C 1.76204 * 107.21987 * 65.00402 * 13 12 2 17 17 C 1.38235 * 120.40626 * 269.72252 * 16 13 12 18 18 N 1.31856 * 120.78946 * 179.70279 * 17 16 13 19 19 C 1.31879 * 121.73606 * 0.58475 * 18 17 16 20 20 C 1.38301 * 120.74783 * 359.70224 * 19 18 17 21 21 Cl 1.73599 * 120.43568 * 179.97438 * 20 19 18 22 22 C 1.38600 * 120.41319 * 89.99694 * 16 13 12 23 23 H 1.08996 * 109.47096 * 299.99670 * 1 2 3 24 24 H 1.08998 * 109.47567 * 60.00090 * 1 2 3 25 25 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 26 26 H 0.96993 * 119.99620 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00091 * 274.99665 * 12 2 1 28 28 H 1.07998 * 119.60753 * 359.97438 * 17 16 13 29 29 H 1.07996 * 119.62554 * 179.68262 * 19 18 17 30 30 H 1.07993 * 120.79986 * 359.97438 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3216 -1.1203 4.0078 9 1 3.6299 -0.5457 4.4123 10 1 1.3434 -0.9493 5.1120 11 1 2.4862 -2.5661 3.7119 12 7 2.0184 -0.6906 -1.1963 13 16 2.4121 0.1772 -2.5505 14 8 2.8776 -0.7634 -3.5086 15 8 1.3246 1.0593 -2.7921 16 6 3.7928 1.1911 -2.1372 17 6 3.6003 2.4652 -1.6367 18 7 4.6279 3.2281 -1.3195 19 6 5.8712 2.8170 -1.4752 20 6 6.1418 1.5566 -1.9759 21 17 7.7816 1.0240 -2.1782 22 6 5.0852 0.7231 -2.3153 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7090 1.1613 3.4844 27 1 2.1111 -1.6561 -1.1950 28 1 2.5962 2.8386 -1.4998 29 1 6.6874 3.4722 -1.2090 30 1 5.2657 -0.2665 -2.7081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269942695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:55 Heat of formation + Delta-G solvation = -69.734415 kcal Electronic energy + Delta-G solvation = -18994.276626 eV Core-core repulsion = 15748.636154 eV Total energy + Delta-G solvation = -3245.640472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39824 -38.40818 -37.81205 -37.27605 -36.98323 -34.13908 -33.92568 -32.45299 -30.14137 -27.22105 -25.46173 -25.00635 -22.84904 -20.72283 -19.42376 -19.00913 -18.13281 -18.00562 -17.76910 -17.05818 -16.27487 -16.25152 -15.58847 -15.32340 -14.58580 -14.51387 -14.16384 -13.95704 -13.54283 -13.32201 -13.24826 -13.16566 -13.01898 -12.83488 -12.69266 -12.40413 -12.39058 -12.20411 -12.01969 -11.50929 -11.14140 -10.86905 -10.58861 -10.31229 -10.14109 -8.14126 -6.28174 -0.80627 -0.53182 -0.26128 0.76131 1.44001 1.47032 1.55196 1.97255 2.24713 2.44901 2.70400 3.08820 3.16340 3.31359 3.42380 3.58804 3.81878 3.98929 4.47886 4.48638 4.55316 4.92184 5.07954 5.12629 5.18564 5.59826 5.75723 6.04435 6.07554 6.40054 6.42298 6.82698 7.41869 8.90841 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.006585 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.100197 B = 4251.153796 C = 5235.319153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.277 3.723 3 H 0.028 0.972 4 C -0.540 4.540 5 H 0.069 0.931 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.266 1.266 12 N -1.095 6.095 13 S 2.716 3.284 14 O -0.979 6.979 15 O -0.977 6.977 16 C -0.721 4.721 17 C 0.197 3.803 18 N -0.495 5.495 19 C 0.165 3.835 20 C -0.114 4.114 21 Cl -0.028 7.028 22 C 0.030 3.970 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.420 0.580 28 H 0.178 0.822 29 H 0.205 0.795 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 0.814 -7.715 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.579 4.579 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.857 5.857 13 S 2.803 3.197 14 O -0.969 6.969 15 O -0.967 6.967 16 C -0.809 4.809 17 C 0.039 3.961 18 N -0.204 5.204 19 C 0.007 3.993 20 C -0.144 4.144 21 Cl 0.001 6.999 22 C 0.003 3.997 23 H 0.089 0.911 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.256 0.744 28 H 0.195 0.805 29 H 0.222 0.778 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.827 1.899 -8.067 12.855 hybrid contribution 0.900 -1.236 1.105 1.887 sum 10.727 0.663 -6.962 12.805 Atomic orbital electron populations 1.22150 0.98123 1.00197 1.00866 1.18317 0.91429 0.91578 0.81548 0.95452 1.21606 1.32007 1.13507 0.90802 0.91249 1.25617 0.95053 0.95640 1.01685 1.69980 1.36832 1.23660 1.24511 0.85598 0.77854 0.79282 0.79150 1.20570 1.21097 1.19026 1.55374 1.80694 1.19170 1.30414 1.01153 0.73244 0.72886 0.72396 1.93529 1.82473 1.61707 1.59214 1.93557 1.51217 1.67507 1.84397 1.32049 1.17418 1.12652 1.18737 1.22858 0.99747 0.88028 0.85504 1.68029 0.99610 1.35996 1.16813 1.23718 0.95116 0.92141 0.88291 1.22121 0.88223 0.97340 1.06692 1.98392 1.15652 1.89984 1.95852 1.21493 0.89283 1.00089 0.88870 0.91065 0.94757 0.94223 0.92553 0.74393 0.80526 0.77805 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.04 9.29 71.98 0.67 -6.37 16 2 C 0.28 12.49 2.76 44.24 0.12 12.61 16 3 H 0.03 1.31 7.27 -2.39 -0.02 1.30 16 4 C -0.54 -26.46 8.76 25.60 0.22 -26.24 16 5 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -48.52 11.32 21.45 0.24 -48.28 16 8 Si 0.96 40.46 29.54 68.60 2.03 42.48 16 9 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 N -1.09 -40.24 5.46 -172.52 -0.94 -41.18 16 13 S 2.72 92.80 5.66 -56.49 -0.32 92.48 16 14 O -0.98 -34.13 17.36 -128.00 -2.22 -36.35 16 15 O -0.98 -38.11 16.56 -128.00 -2.12 -40.23 16 16 C -0.72 -22.76 5.83 22.36 0.13 -22.63 16 17 C 0.20 6.42 10.11 84.69 0.86 7.28 16 18 N -0.50 -15.09 10.36 -195.75 -2.03 -17.11 16 19 C 0.16 4.02 10.99 84.70 0.93 4.95 16 20 C -0.11 -2.78 6.34 22.42 0.14 -2.63 16 21 Cl -0.03 -0.54 28.99 -2.72 -0.08 -0.62 16 22 C 0.03 0.81 9.46 22.49 0.21 1.02 16 23 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 24 H 0.03 1.47 7.64 -2.39 -0.02 1.45 16 25 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.42 13.74 8.83 -96.75 -0.85 12.88 16 28 H 0.18 5.73 7.62 -2.91 -0.02 5.71 16 29 H 0.21 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.18 4.11 7.71 -2.91 -0.02 4.08 16 Total: -1.00 -60.47 292.88 -1.37 -61.84 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.34 Total: 17.49 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 3.74 Total: -30.52 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -2.73 Total: -106.57 kcal Atomic # 8 Polarization: -72.24 SS G_CDS: -4.34 Total: -76.58 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 92.80 SS G_CDS: -0.32 Total: 92.48 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -60.47 -1.37 -61.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269942695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.899 kcal (2) G-P(sol) polarization free energy of solvation -60.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds