Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99910 * 2 1 4 4 H 1.48495 * 109.47370 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.46908 * 30.00161 * 3 2 1 6 6 H 1.48501 * 109.47102 * 149.99672 * 3 2 1 7 7 C 1.37880 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99658 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00455 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47485 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47569 * 179.97438 * 10 9 7 12 12 S 1.65599 * 120.00141 * 165.00083 * 11 10 9 13 13 O 1.42106 * 106.40227 * 311.45608 * 12 11 10 14 14 O 1.42100 * 106.40324 * 178.54122 * 12 11 10 15 15 C 1.76199 * 107.21905 * 64.99953 * 12 11 10 16 16 C 1.38227 * 120.41116 * 269.72603 * 15 12 11 17 17 N 1.31851 * 120.79147 * 179.70444 * 16 15 12 18 18 C 1.31877 * 121.73704 * 0.58549 * 17 16 15 19 19 C 1.38303 * 120.74567 * 359.69943 * 18 17 16 20 20 Cl 1.73603 * 120.42966 * 179.97438 * 19 18 17 21 21 C 1.38605 * 120.41249 * 90.00192 * 15 12 11 22 22 H 0.96999 * 119.99915 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47170 * 59.99770 * 9 7 2 24 24 H 1.09003 * 109.46749 * 299.99823 * 9 7 2 25 25 H 1.09005 * 109.47078 * 59.99746 * 10 9 7 26 26 H 1.09003 * 109.47008 * 299.99696 * 10 9 7 27 27 H 0.97005 * 119.99711 * 344.99738 * 11 10 9 28 28 H 1.08000 * 119.60756 * 359.97148 * 16 15 12 29 29 H 1.08000 * 119.62720 * 179.72865 * 18 17 16 30 30 H 1.08005 * 120.79219 * 359.97438 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 7 5.4866 -2.6364 0.0022 12 16 6.3146 -4.0214 0.3745 13 8 5.7337 -4.5276 1.5685 14 8 7.6954 -3.7080 0.2543 15 6 5.9594 -5.1970 -0.8889 16 6 4.8861 -6.0586 -0.7613 17 7 4.6100 -6.9373 -1.7047 18 6 5.3453 -7.0390 -2.7947 19 6 6.4385 -6.2145 -2.9896 20 17 7.4012 -6.3558 -4.4273 21 6 6.7562 -5.2732 -2.0205 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8751 -0.6803 -0.8889 25 1 3.6586 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9716 -1.8251 -0.2159 28 1 4.2636 -6.0086 0.1199 29 1 5.0907 -7.7740 -3.5439 30 1 7.6037 -4.6155 -2.1454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273585529.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = -49.285151 kcal Electronic energy + Delta-G solvation = -18305.543015 eV Core-core repulsion = 15060.789289 eV Total energy + Delta-G solvation = -3244.753725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58579 -37.33378 -37.06784 -35.92134 -35.69791 -33.10063 -32.76469 -31.64144 -29.80205 -24.72298 -24.60282 -24.13873 -21.03160 -19.69951 -18.44961 -17.58265 -17.31430 -16.95242 -16.83723 -15.65135 -15.45423 -14.78219 -14.34777 -14.29164 -14.12060 -13.76135 -13.20822 -12.70535 -12.50261 -12.31725 -12.17490 -12.05959 -11.82354 -11.69808 -11.61868 -11.39059 -10.69455 -10.55794 -10.14738 -10.02689 -9.93744 -9.54895 -9.40049 -9.18240 -8.65493 -6.15738 -4.16477 0.03257 0.37532 0.55807 1.52969 2.86714 3.14523 3.23037 3.31923 3.33192 3.65487 3.91630 4.12605 4.21899 4.34582 4.40580 4.59068 4.87760 5.17874 5.28389 5.34040 5.47089 5.88459 5.92920 6.12535 6.39638 7.02795 7.09490 7.17779 7.25117 7.62280 8.36830 8.86812 9.44585 10.97034 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.004326 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.021387 B = 6470.417366 C = 6874.057355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.017 4.017 10 C 0.123 3.877 11 N -1.110 6.110 12 S 2.700 3.300 13 O -0.947 6.947 14 O -0.962 6.962 15 C -0.721 4.721 16 C 0.207 3.793 17 N -0.477 5.477 18 C 0.166 3.834 19 C -0.116 4.116 20 Cl -0.045 7.045 21 C 0.036 3.964 22 H 0.265 0.735 23 H 0.027 0.973 24 H 0.019 0.981 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.418 0.582 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 -11.763 -6.264 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.056 4.056 10 C -0.001 4.001 11 N -0.873 5.873 12 S 2.785 3.215 13 O -0.936 6.936 14 O -0.952 6.952 15 C -0.807 4.807 16 C 0.049 3.951 17 N -0.186 5.186 18 C 0.008 3.992 19 C -0.145 4.145 20 Cl -0.016 7.016 21 C 0.009 3.991 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.253 0.747 28 H 0.201 0.799 29 H 0.191 0.809 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 14.170 -12.563 -5.552 19.735 hybrid contribution 0.972 1.546 -1.172 2.170 sum 15.142 -11.018 -6.723 19.897 Atomic orbital electron populations 1.69893 1.06303 1.27146 1.50182 1.24983 0.94741 0.99169 0.94249 0.86786 0.80419 0.83577 0.78534 1.20251 1.21220 1.18906 1.20930 0.88633 0.94911 1.52083 0.90566 1.19756 0.97736 0.90784 0.97344 1.21538 0.74781 1.02491 1.01318 1.55533 1.17733 1.25986 1.88022 1.01905 0.72928 0.72957 0.73731 1.93617 1.78608 1.80058 1.41353 1.93581 1.31134 1.83635 1.86832 1.32339 1.07925 1.21592 1.18813 1.22872 0.90334 0.85783 0.96096 1.68039 1.28199 1.20878 1.01473 1.23214 0.87510 0.94162 0.94312 1.22102 0.98148 1.02034 0.92240 1.98400 1.70200 1.97365 1.35684 1.21270 0.95825 0.93200 0.88785 0.92494 0.95442 0.96233 0.92377 0.90306 0.74669 0.79884 0.80941 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 7 C -0.53 -14.01 9.66 -34.44 -0.33 -14.34 16 8 H 0.08 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.02 -0.37 4.18 -27.89 -0.12 -0.48 16 10 C 0.12 2.13 6.16 -4.04 -0.02 2.10 16 11 N -1.11 -15.50 6.00 -10.61 -0.06 -15.56 16 12 S 2.70 36.12 5.75 -107.50 -0.62 35.50 16 13 O -0.95 -15.08 16.77 -57.17 -0.96 -16.04 16 14 O -0.96 -14.12 17.36 -57.17 -0.99 -15.11 16 15 C -0.72 -8.69 5.96 -39.45 -0.24 -8.92 16 16 C 0.21 2.55 10.69 -17.55 -0.19 2.36 16 17 N -0.48 -5.82 10.36 -13.23 -0.14 -5.96 16 18 C 0.17 1.68 10.99 -17.51 -0.19 1.48 16 19 C -0.12 -1.18 6.34 -39.36 -0.25 -1.43 16 20 Cl -0.05 -0.40 28.99 -51.86 -1.50 -1.90 16 21 C 0.04 0.40 9.45 -39.25 -0.37 0.03 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 24 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 27 H 0.42 5.14 8.65 -34.47 -0.30 4.84 16 28 H 0.18 2.03 7.62 -52.49 -0.40 1.63 16 29 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.16 1.50 7.71 -52.48 -0.40 1.10 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -32.54 295.33 -8.23 -40.77 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.70 Total: 1.06 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.81 Total: -17.33 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.57 Total: -47.30 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.95 Total: -31.14 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: 36.12 SS G_CDS: -0.62 Total: 35.50 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.54 -8.23 -40.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273585529.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.514 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds