Wall clock time and date at job start Tue Mar 31 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99910 * 2 1 4 4 H 1.48495 * 109.47370 * 269.99831 * 3 2 1 5 5 H 1.48499 * 109.46908 * 30.00161 * 3 2 1 6 6 H 1.48501 * 109.47102 * 149.99672 * 3 2 1 7 7 C 1.37880 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99658 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00455 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47485 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47569 * 179.97438 * 10 9 7 12 12 S 1.65599 * 120.00141 * 165.00083 * 11 10 9 13 13 O 1.42106 * 106.40227 * 311.45608 * 12 11 10 14 14 O 1.42100 * 106.40324 * 178.54122 * 12 11 10 15 15 C 1.76199 * 107.21905 * 64.99953 * 12 11 10 16 16 C 1.38227 * 120.41116 * 269.72603 * 15 12 11 17 17 N 1.31851 * 120.79147 * 179.70444 * 16 15 12 18 18 C 1.31877 * 121.73704 * 0.58549 * 17 16 15 19 19 C 1.38303 * 120.74567 * 359.69943 * 18 17 16 20 20 Cl 1.73603 * 120.42966 * 179.97438 * 19 18 17 21 21 C 1.38605 * 120.41249 * 90.00192 * 15 12 11 22 22 H 0.96999 * 119.99915 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47170 * 59.99770 * 9 7 2 24 24 H 1.09003 * 109.46749 * 299.99823 * 9 7 2 25 25 H 1.09005 * 109.47078 * 59.99746 * 10 9 7 26 26 H 1.09003 * 109.47008 * 299.99696 * 10 9 7 27 27 H 0.97005 * 119.99711 * 344.99738 * 11 10 9 28 28 H 1.08000 * 119.60756 * 359.97148 * 16 15 12 29 29 H 1.08000 * 119.62720 * 179.72865 * 18 17 16 30 30 H 1.08005 * 120.79219 * 359.97438 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 7 5.4866 -2.6364 0.0022 12 16 6.3146 -4.0214 0.3745 13 8 5.7337 -4.5276 1.5685 14 8 7.6954 -3.7080 0.2543 15 6 5.9594 -5.1970 -0.8889 16 6 4.8861 -6.0586 -0.7613 17 7 4.6100 -6.9373 -1.7047 18 6 5.3453 -7.0390 -2.7947 19 6 6.4385 -6.2145 -2.9896 20 17 7.4012 -6.3558 -4.4273 21 6 6.7562 -5.2732 -2.0205 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8751 -0.6803 -0.8889 25 1 3.6586 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9716 -1.8251 -0.2159 28 1 4.2636 -6.0086 0.1199 29 1 5.0907 -7.7740 -3.5439 30 1 7.6037 -4.6155 -2.1454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273585529.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:34 Heat of formation + Delta-G solvation = -74.189718 kcal Electronic energy + Delta-G solvation = -18306.622958 eV Core-core repulsion = 15060.789289 eV Total energy + Delta-G solvation = -3245.833668 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44357 -38.48477 -37.82982 -37.12959 -37.06810 -34.70870 -33.97364 -32.49104 -31.52537 -26.42048 -25.50486 -25.02605 -22.71122 -20.80209 -19.50818 -18.93672 -18.53552 -18.15404 -17.88837 -16.87730 -16.34193 -16.22602 -15.70987 -15.63276 -15.49536 -14.61873 -14.59125 -14.07543 -13.62045 -13.44313 -13.36140 -13.28380 -13.24601 -13.11549 -12.75615 -12.42391 -12.24567 -11.82833 -11.79406 -11.54337 -11.42450 -10.92599 -10.75246 -10.41615 -10.35746 -8.26377 -6.31665 -0.90608 -0.64189 -0.29848 0.75257 1.40298 1.43175 1.53469 1.83612 2.19517 2.39066 2.60326 3.02795 3.09833 3.25522 3.39780 3.54253 3.77960 3.91094 4.13865 4.44341 4.47946 4.53637 4.65934 4.87544 5.04616 5.38161 5.47009 5.64014 6.04922 6.28268 6.39500 6.76957 7.33109 8.89760 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.004326 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.021387 B = 6470.417366 C = 6874.057355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.241 1.241 7 C -0.533 4.533 8 H 0.041 0.959 9 C -0.019 4.019 10 C 0.133 3.867 11 N -1.105 6.105 12 S 2.724 3.276 13 O -0.974 6.974 14 O -0.971 6.971 15 C -0.724 4.724 16 C 0.195 3.805 17 N -0.496 5.496 18 C 0.168 3.832 19 C -0.116 4.116 20 Cl -0.029 7.029 21 C 0.031 3.969 22 H 0.266 0.734 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.428 0.572 28 H 0.187 0.813 29 H 0.203 0.797 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.687 -11.577 -7.334 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.164 1.164 7 C -0.572 4.572 8 H 0.059 0.941 9 C -0.058 4.058 10 C 0.008 3.992 11 N -0.868 5.868 12 S 2.811 3.189 13 O -0.964 6.964 14 O -0.961 6.961 15 C -0.812 4.812 16 C 0.037 3.963 17 N -0.205 5.205 18 C 0.010 3.990 19 C -0.145 4.145 20 Cl -0.001 7.001 21 C 0.004 3.996 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.265 0.735 28 H 0.204 0.796 29 H 0.220 0.780 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 16.343 -12.365 -6.609 21.533 hybrid contribution 0.311 1.340 -0.923 1.656 sum 16.654 -11.025 -7.532 21.346 Atomic orbital electron populations 1.70056 1.08371 1.28178 1.52371 1.25958 0.95533 1.03453 0.94089 0.85705 0.79730 0.78303 0.79192 1.19114 1.21585 1.16449 1.21324 0.91532 0.93564 1.50758 0.94090 1.19702 0.94328 0.93687 0.98061 1.21204 0.76492 0.99924 1.01626 1.55306 1.16213 1.27110 1.88190 1.00990 0.72180 0.72473 0.73248 1.93582 1.79009 1.80418 1.43418 1.93566 1.31548 1.83920 1.87086 1.31991 1.08669 1.21544 1.18979 1.23017 0.90631 0.86116 0.96536 1.68075 1.29035 1.21184 1.02178 1.23727 0.86905 0.94253 0.94076 1.22158 0.98218 1.01588 0.92576 1.98410 1.69736 1.97272 1.34636 1.21534 0.95991 0.93587 0.88459 0.92514 0.95030 0.94642 0.91553 0.90876 0.73544 0.79642 0.78033 0.80450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 13.96 21.45 0.30 -57.25 16 2 C 0.01 0.39 5.47 84.66 0.46 0.85 16 3 Si 0.95 41.67 27.47 68.60 1.88 43.56 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 7 C -0.53 -28.59 9.66 25.60 0.25 -28.34 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 9 C -0.02 -0.78 4.18 29.85 0.12 -0.65 16 10 C 0.13 4.45 6.16 86.38 0.53 4.98 16 11 N -1.11 -28.89 6.00 -187.49 -1.12 -30.02 16 12 S 2.72 69.33 5.75 -56.49 -0.32 69.01 16 13 O -0.97 -30.47 16.77 -128.00 -2.15 -32.61 16 14 O -0.97 -26.74 17.36 -128.00 -2.22 -28.96 16 15 C -0.72 -16.46 5.96 22.35 0.13 -16.32 16 16 C 0.20 4.64 10.69 84.69 0.90 5.55 16 17 N -0.50 -11.48 10.36 -195.76 -2.03 -13.50 16 18 C 0.17 3.04 10.99 84.70 0.93 3.97 16 19 C -0.12 -2.09 6.34 22.41 0.14 -1.95 16 20 Cl -0.03 -0.44 28.99 -2.72 -0.08 -0.52 16 21 C 0.03 0.62 9.45 22.49 0.21 0.83 16 22 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.03 1.29 7.20 -2.38 -0.02 1.27 16 24 H 0.04 1.37 7.57 -2.39 -0.02 1.35 16 25 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.07 2.52 7.75 -2.39 -0.02 2.51 16 27 H 0.43 9.45 8.65 -96.74 -0.84 8.62 16 28 H 0.19 4.12 7.62 -2.91 -0.02 4.10 16 29 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.18 2.85 7.71 -2.91 -0.02 2.83 16 Total: -1.00 -69.47 295.33 -1.76 -71.23 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.29 Total: 10.15 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.69 Total: -31.08 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -2.85 Total: -100.77 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -4.37 Total: -61.57 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.56 kcal Atomic # 16 Polarization: 69.33 SS G_CDS: -0.32 Total: 69.01 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -69.47 -1.76 -71.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273585529.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.963 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds