Wall clock time and date at job start Tue Mar 31 2020 06:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.70933 * 125.57596 * 2 1 4 4 C 1.70761 * 91.15185 * 179.97438 * 3 2 1 5 5 Br 1.89107 * 124.71589 * 180.02562 * 4 3 2 6 6 N 1.28742 * 110.56802 * 359.97438 * 4 3 2 7 7 C 1.33634 * 115.73412 * 359.97438 * 6 4 3 8 8 C 1.47154 * 123.14788 * 180.02562 * 7 6 4 9 9 O 1.21668 * 119.99782 * 179.97438 * 8 7 6 10 10 N 1.34781 * 120.00361 * 359.97438 * 8 7 6 11 11 C 1.36950 * 120.00106 * 179.97438 * 10 8 7 12 12 H 1.08005 * 120.00279 * 359.97438 * 11 10 8 13 13 C 1.38976 * 120.00273 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99820 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00357 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47023 * 59.99742 * 15 13 11 17 17 H 1.48502 * 109.47111 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47162 * 300.00163 * 15 13 11 19 19 H 1.09005 * 109.47384 * 270.02137 * 1 2 3 20 20 H 1.08998 * 109.47493 * 30.02653 * 1 2 3 21 21 H 1.09006 * 109.46694 * 150.02501 * 1 2 3 22 22 H 0.97000 * 119.99790 * 0.02562 * 10 8 7 23 23 H 0.96996 * 120.00281 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5014 1.3903 0.0000 4 6 3.9100 0.4249 0.0008 5 35 5.6771 1.0983 0.0019 6 7 3.6016 -0.8250 0.0015 7 6 2.2939 -1.1001 0.0021 8 6 1.7601 -2.4714 0.0035 9 8 0.5575 -2.6560 0.0044 10 7 2.6033 -3.5229 0.0038 11 6 2.1064 -4.7990 0.0057 12 1 1.0389 -4.9630 0.0073 13 6 2.9758 -5.8833 0.0065 14 7 4.2747 -5.6839 0.0050 15 14 2.2982 -7.6240 0.0083 16 1 1.4659 -7.8324 -1.2037 17 1 3.4233 -8.5932 0.0084 18 1 1.4665 -7.8301 1.2212 19 1 -0.3634 0.0004 1.0277 20 1 -0.3634 0.8897 -0.5142 21 1 -0.3633 -0.8903 -0.5135 22 1 3.5621 -3.3757 0.0035 23 1 4.8816 -6.4406 0.0052 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277657050.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:27 Heat of formation + Delta-G solvation = -19.701491 kcal Electronic energy + Delta-G solvation = -13115.726790 eV Core-core repulsion = 10521.995128 eV Total energy + Delta-G solvation = -2593.731662 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.44702 -39.32958 -36.21415 -34.02506 -33.41709 -32.20635 -28.89342 -26.83734 -25.29831 -23.15344 -20.61079 -19.82045 -19.61068 -17.27453 -16.88801 -16.61096 -16.14524 -15.67949 -14.98625 -14.76417 -14.26983 -14.02020 -13.75997 -13.43617 -12.96030 -12.71674 -12.49697 -12.13215 -12.04454 -11.78806 -11.58491 -11.01943 -10.51798 -10.42146 -10.16405 -9.83483 -8.56354 -6.03834 -0.69596 -0.43013 0.35448 0.39365 0.82764 1.39954 1.46327 1.53203 2.25272 2.37261 3.05291 3.21748 3.45366 3.88061 4.07241 4.63957 4.69184 4.80798 5.27317 5.35638 5.85161 6.15926 6.48725 6.96957 7.40368 7.93066 8.60431 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.005604 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.116734 B = 4994.941704 C = 6227.914432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.196 4.196 3 S 0.364 5.636 4 C -0.038 4.038 5 Br 0.069 6.931 6 N -0.442 5.442 7 C -0.004 4.004 8 C 0.493 3.507 9 O -0.613 6.613 10 N -0.542 5.542 11 C -0.339 4.339 12 H 0.093 0.907 13 C -0.013 4.013 14 N -0.911 5.911 15 Si 1.007 2.993 16 H -0.266 1.266 17 H -0.269 1.269 18 H -0.266 1.266 19 H 0.089 0.911 20 H 0.105 0.895 21 H 0.080 0.920 22 H 0.399 0.601 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 17.838 -0.027 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.322 4.322 3 S 0.617 5.383 4 C -0.393 4.393 5 Br 0.150 6.850 6 N -0.160 5.160 7 C -0.140 4.140 8 C 0.280 3.720 9 O -0.502 6.502 10 N -0.175 5.175 11 C -0.469 4.469 12 H 0.111 0.889 13 C -0.215 4.215 14 N -0.550 5.550 15 Si 0.828 3.172 16 H -0.191 1.191 17 H -0.193 1.193 18 H -0.191 1.191 19 H 0.108 0.892 20 H 0.124 0.876 21 H 0.098 0.902 22 H 0.233 0.767 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.126 18.450 -0.028 18.572 hybrid contribution 0.020 -2.139 0.023 2.139 sum 2.146 16.311 -0.005 16.451 Atomic orbital electron populations 1.20567 0.84140 1.04932 1.04366 1.26119 1.05145 0.96795 1.04167 1.81958 0.89687 1.03948 1.62743 1.28518 1.01512 0.95245 1.14018 1.96788 1.09045 1.81518 1.97696 1.66908 1.17612 1.18707 1.12765 1.20326 0.87109 0.96211 1.10326 1.17111 0.86153 0.83269 0.85516 1.90530 1.14908 1.85253 1.59481 1.41919 1.09370 1.05231 1.60961 1.19884 0.94485 0.82243 1.50271 0.88902 1.26370 0.95154 1.04661 0.95283 1.69736 1.02866 1.34597 1.47843 0.84799 0.77894 0.75074 0.79403 1.19080 1.19313 1.19073 0.89249 0.87611 0.90162 0.76680 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.33 9.64 71.23 0.69 -1.64 14 2 C -0.20 -6.51 6.40 25.00 0.16 -6.35 14 3 S 0.36 8.52 22.93 -56.49 -1.30 7.22 14 4 C -0.04 -1.19 7.84 130.70 1.02 -0.16 14 5 Br 0.07 1.72 34.12 -20.37 -0.70 1.02 14 6 N -0.44 -18.11 10.13 -187.94 -1.90 -20.01 14 7 C 0.00 -0.19 6.70 40.52 0.27 0.08 14 8 C 0.49 26.22 7.74 86.58 0.67 26.89 14 9 O -0.61 -34.27 13.68 -4.25 -0.06 -34.33 14 10 N -0.54 -30.98 5.28 -310.19 -1.64 -32.62 14 11 C -0.34 -20.00 9.68 84.07 0.81 -19.19 14 12 H 0.09 5.60 7.15 -2.91 -0.02 5.58 14 13 C -0.01 -0.73 5.50 84.93 0.47 -0.27 14 14 N -0.91 -51.59 13.05 21.67 0.28 -51.31 14 15 Si 1.01 43.12 29.55 68.60 2.03 45.14 14 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 14 17 H -0.27 -10.82 7.11 99.48 0.71 -10.11 14 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 14 19 H 0.09 2.38 8.14 -2.38 -0.02 2.36 14 20 H 0.11 2.06 8.14 -2.39 -0.02 2.04 14 21 H 0.08 2.92 6.00 -2.38 -0.01 2.90 14 22 H 0.40 22.99 7.41 -92.71 -0.69 22.30 14 23 H 0.28 14.78 8.31 -92.71 -0.77 14.01 14 Total: -1.00 -68.62 248.72 1.41 -67.21 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.59 Total: 18.30 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.09 Total: -0.64 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -3.26 Total: -103.94 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.06 Total: -34.33 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 8.52 SS G_CDS: -1.30 Total: 7.22 kcal Atomic # 35 Polarization: 1.72 SS G_CDS: -0.70 Total: 1.02 kcal Total: -68.62 1.41 -67.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277657050.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.513 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds