Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47239 * 2 1 4 4 C 1.36935 * 120.00066 * 94.56595 * 3 2 1 5 5 H 1.08005 * 119.99799 * 37.74986 * 4 3 2 6 6 C 1.38806 * 120.00508 * 217.47686 * 4 3 2 7 7 N 1.31621 * 120.00470 * 212.09233 * 6 4 3 8 8 Si 1.86808 * 119.99783 * 32.08928 * 6 4 3 9 9 H 1.48490 * 109.47216 * 86.01811 * 8 6 4 10 10 H 1.48499 * 109.46848 * 206.01705 * 8 6 4 11 11 H 1.48497 * 109.46734 * 326.01576 * 8 6 4 12 12 C 1.46496 * 120.00090 * 274.56832 * 3 2 1 13 13 C 1.50697 * 109.47407 * 275.35518 * 12 3 2 14 14 C 1.33587 * 126.02818 * 89.99584 * 13 12 3 15 15 N 1.31830 * 114.51469 * 179.97438 * 14 13 12 16 16 C 1.29109 * 117.08793 * 0.02562 * 15 14 13 17 17 Br 1.89104 * 124.92149 * 179.97438 * 16 15 14 18 18 S 1.70984 * 110.15922 * 359.74410 * 16 15 14 19 19 H 1.09004 * 109.46767 * 184.92059 * 1 2 3 20 20 H 1.08995 * 109.46908 * 304.92093 * 1 2 3 21 21 H 1.09003 * 109.46745 * 64.92780 * 1 2 3 22 22 H 1.09004 * 109.47012 * 239.99946 * 2 1 3 23 23 H 1.09004 * 109.46797 * 120.00321 * 2 1 3 24 24 H 0.97000 * 120.00154 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46940 * 35.35537 * 12 3 2 26 26 H 1.09006 * 109.47228 * 155.35132 * 12 3 2 27 27 H 1.08006 * 122.74016 * 359.96213 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3356 1.9952 1.1821 5 1 2.8132 1.4334 1.9713 6 6 2.0487 3.3410 1.3641 7 7 2.8304 4.0846 2.1180 8 14 0.5529 4.0970 0.5389 9 1 -0.6414 3.8947 1.3977 10 1 0.7793 5.5512 0.3404 11 1 0.3321 3.4462 -0.7775 12 6 2.1673 2.1054 -1.2646 13 6 3.5045 1.7773 -1.8771 14 6 3.7561 0.7757 -2.7245 15 7 5.0108 0.6970 -3.1213 16 6 5.8314 1.5775 -2.6542 17 35 7.6731 1.6705 -3.0732 18 16 5.0104 2.6512 -1.6070 19 1 -0.3633 -1.0239 0.0882 20 1 -0.3633 0.5883 0.8426 21 1 -0.3633 0.4355 -0.9309 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.6301 5.0252 2.2449 25 1 1.3719 1.8095 -1.9487 26 1 2.1061 3.1778 -1.0786 27 1 2.9938 0.0866 -3.0571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297255294.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = 69.395736 kcal Electronic energy + Delta-G solvation = -13689.536472 eV Core-core repulsion = 11235.501450 eV Total energy + Delta-G solvation = -2454.035022 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.19884 -36.43915 -32.21394 -32.00241 -30.70444 -28.83878 -25.88167 -24.11158 -23.54585 -20.41041 -19.49925 -17.87083 -16.92841 -15.27230 -15.05105 -14.68431 -14.09128 -13.62797 -13.39453 -13.34194 -12.59319 -12.33273 -11.92624 -11.54164 -11.13357 -10.86011 -10.79795 -10.69641 -10.37798 -10.28476 -10.17171 -9.73809 -9.28004 -8.76962 -8.66378 -8.34636 -7.11036 -6.28312 -3.56358 0.97535 1.14348 2.00099 2.23519 3.12591 3.22377 3.34271 3.38753 4.34555 4.82489 5.03805 5.14023 5.57597 5.70322 5.79237 6.08116 6.15379 6.22594 6.37024 6.42171 6.52688 6.66689 6.92146 7.78657 7.91623 8.19729 8.74933 9.47234 9.89221 10.85694 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.005809 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.679171 B = 4818.923105 C = 5397.756956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 N -0.586 5.586 4 C -0.279 4.279 5 H 0.079 0.921 6 C 0.049 3.951 7 N -0.867 5.867 8 Si 0.847 3.153 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.259 1.259 12 C 0.206 3.794 13 C -0.183 4.183 14 C 0.004 3.996 15 N -0.442 5.442 16 C -0.030 4.030 17 Br 0.024 6.976 18 S 0.226 5.774 19 H 0.043 0.957 20 H 0.057 0.943 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.056 0.944 24 H 0.268 0.732 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -3.422 -9.837 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.306 5.306 4 C -0.408 4.408 5 H 0.096 0.904 6 C -0.155 4.155 7 N -0.504 5.504 8 Si 0.674 3.326 9 H -0.210 1.210 10 H -0.218 1.218 11 H -0.184 1.184 12 C 0.077 3.923 13 C -0.310 4.310 14 C -0.150 4.150 15 N -0.158 5.158 16 C -0.383 4.383 17 Br 0.105 6.895 18 S 0.476 5.524 19 H 0.062 0.938 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.189 -2.769 -9.663 11.804 hybrid contribution -1.814 -0.235 -0.495 1.895 sum 4.375 -3.004 -10.158 11.461 Atomic orbital electron populations 1.22317 0.99243 0.99877 1.01485 1.20930 0.91874 0.85968 0.99552 1.44208 1.73363 1.11621 1.01371 1.18737 1.35345 0.93825 0.92900 0.90360 1.25488 0.97152 0.96397 0.96442 1.70031 1.34098 1.06574 1.39682 0.87480 0.86510 0.77960 0.80680 1.21028 1.21833 1.18418 1.20113 0.86957 0.97670 0.87560 1.27930 1.02835 1.00123 1.00132 1.21413 0.92108 1.00646 1.00794 1.66077 1.02511 1.23380 1.23836 1.27895 0.98303 1.04495 1.07649 1.96683 1.01013 1.97861 1.93973 1.84491 0.99693 1.28418 1.39847 0.93819 0.92396 0.93943 0.94282 0.92530 0.92252 0.91664 0.90860 0.81096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 10.24 37.16 0.38 -2.43 15 2 C 0.14 2.62 6.41 -4.04 -0.03 2.59 15 3 N -0.59 -12.72 2.03 -174.61 -0.36 -13.08 15 4 C -0.28 -7.15 9.78 -15.06 -0.15 -7.30 15 5 H 0.08 2.21 8.06 -52.48 -0.42 1.79 15 6 C 0.05 1.30 5.04 -17.43 -0.09 1.21 15 7 N -0.87 -24.23 13.97 55.49 0.78 -23.45 15 8 Si 0.85 19.72 26.49 -169.99 -4.50 15.22 15 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 11 H -0.26 -5.59 5.49 56.52 0.31 -5.28 15 12 C 0.21 4.11 4.39 -5.20 -0.02 4.09 15 13 C -0.18 -3.47 6.17 -35.94 -0.22 -3.70 15 14 C 0.00 0.07 11.25 -19.18 -0.22 -0.15 15 15 N -0.44 -8.16 10.55 -14.12 -0.15 -8.31 15 16 C -0.03 -0.53 7.89 51.62 0.41 -0.13 15 17 Br 0.02 0.35 34.13 -68.01 -2.32 -1.97 15 18 S 0.23 4.21 23.22 -107.50 -2.50 1.71 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.04 0.65 8.11 -51.93 -0.42 0.23 15 23 H 0.06 1.06 8.00 -51.93 -0.42 0.65 15 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 25 H 0.07 1.16 8.09 -51.93 -0.42 0.74 15 26 H 0.07 1.58 4.44 -51.93 -0.23 1.35 15 27 H 0.17 2.58 8.06 -52.48 -0.42 2.16 15 LS Contribution 268.75 15.07 4.05 4.05 Total: -1.00 -27.26 268.75 -7.76 -35.01 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -2.83 Total: -3.38 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 0.07 Total: -5.81 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.27 Total: -44.84 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.50 Total: 15.22 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.50 Total: 1.71 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -2.32 Total: -1.97 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.26 -7.76 -35.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297255294.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.411 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds