Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47239 * 2 1 4 4 C 1.36935 * 120.00066 * 94.56595 * 3 2 1 5 5 H 1.08005 * 119.99799 * 37.74986 * 4 3 2 6 6 C 1.38806 * 120.00508 * 217.47686 * 4 3 2 7 7 N 1.31621 * 120.00470 * 212.09233 * 6 4 3 8 8 Si 1.86808 * 119.99783 * 32.08928 * 6 4 3 9 9 H 1.48490 * 109.47216 * 86.01811 * 8 6 4 10 10 H 1.48499 * 109.46848 * 206.01705 * 8 6 4 11 11 H 1.48497 * 109.46734 * 326.01576 * 8 6 4 12 12 C 1.46496 * 120.00090 * 274.56832 * 3 2 1 13 13 C 1.50697 * 109.47407 * 275.35518 * 12 3 2 14 14 C 1.33587 * 126.02818 * 89.99584 * 13 12 3 15 15 N 1.31830 * 114.51469 * 179.97438 * 14 13 12 16 16 C 1.29109 * 117.08793 * 0.02562 * 15 14 13 17 17 Br 1.89104 * 124.92149 * 179.97438 * 16 15 14 18 18 S 1.70984 * 110.15922 * 359.74410 * 16 15 14 19 19 H 1.09004 * 109.46767 * 184.92059 * 1 2 3 20 20 H 1.08995 * 109.46908 * 304.92093 * 1 2 3 21 21 H 1.09003 * 109.46745 * 64.92780 * 1 2 3 22 22 H 1.09004 * 109.47012 * 239.99946 * 2 1 3 23 23 H 1.09004 * 109.46797 * 120.00321 * 2 1 3 24 24 H 0.97000 * 120.00154 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46940 * 35.35537 * 12 3 2 26 26 H 1.09006 * 109.47228 * 155.35132 * 12 3 2 27 27 H 1.08006 * 122.74016 * 359.96213 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3356 1.9952 1.1821 5 1 2.8132 1.4334 1.9713 6 6 2.0487 3.3410 1.3641 7 7 2.8304 4.0846 2.1180 8 14 0.5529 4.0970 0.5389 9 1 -0.6414 3.8947 1.3977 10 1 0.7793 5.5512 0.3404 11 1 0.3321 3.4462 -0.7775 12 6 2.1673 2.1054 -1.2646 13 6 3.5045 1.7773 -1.8771 14 6 3.7561 0.7757 -2.7245 15 7 5.0108 0.6970 -3.1213 16 6 5.8314 1.5775 -2.6542 17 35 7.6731 1.6705 -3.0732 18 16 5.0104 2.6512 -1.6070 19 1 -0.3633 -1.0239 0.0882 20 1 -0.3633 0.5883 0.8426 21 1 -0.3633 0.4355 -0.9309 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.6301 5.0252 2.2449 25 1 1.3719 1.8095 -1.9487 26 1 2.1061 3.1778 -1.0786 27 1 2.9938 0.0866 -3.0571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297255294.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = 53.317220 kcal Electronic energy + Delta-G solvation = -13690.233689 eV Core-core repulsion = 11235.501450 eV Total energy + Delta-G solvation = -2454.732238 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64306 -38.06602 -34.08584 -33.41226 -32.11510 -30.41150 -27.43979 -25.79745 -25.02928 -21.98629 -20.96317 -19.42013 -18.67930 -17.05157 -16.55927 -16.20572 -15.60236 -15.16883 -14.97343 -14.81520 -14.40265 -13.90295 -13.33521 -13.08296 -12.69547 -12.59277 -12.32660 -12.10389 -11.96576 -11.70180 -11.59180 -11.47932 -10.76485 -10.57573 -10.26563 -9.76822 -8.87318 -8.26718 -5.54346 -0.46769 -0.24988 0.57223 0.78909 1.36198 1.47624 1.51651 1.71765 2.42487 2.98589 3.44842 3.65776 4.08581 4.21091 4.41787 4.63950 4.77907 4.85312 4.89369 5.07883 5.12060 5.27173 5.56520 5.89684 6.19768 6.47864 6.94277 7.59254 8.02838 8.91971 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.005809 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.679171 B = 4818.923105 C = 5397.756956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 N -0.598 5.598 4 C -0.269 4.269 5 H 0.036 0.964 6 C 0.004 3.996 7 N -0.919 5.919 8 Si 0.902 3.098 9 H -0.293 1.293 10 H -0.299 1.299 11 H -0.228 1.228 12 C 0.207 3.793 13 C -0.198 4.198 14 C 0.020 3.980 15 N -0.454 5.454 16 C -0.021 4.021 17 Br 0.057 6.943 18 S 0.196 5.804 19 H 0.072 0.928 20 H 0.032 0.968 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.265 0.735 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -4.655 -12.319 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 N -0.319 5.319 4 C -0.399 4.399 5 H 0.053 0.947 6 C -0.196 4.196 7 N -0.560 5.560 8 Si 0.728 3.272 9 H -0.220 1.220 10 H -0.226 1.226 11 H -0.151 1.151 12 C 0.079 3.921 13 C -0.324 4.324 14 C -0.133 4.133 15 N -0.171 5.171 16 C -0.375 4.375 17 Br 0.137 6.863 18 S 0.446 5.554 19 H 0.091 0.909 20 H 0.052 0.948 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.573 -4.033 -12.178 13.987 hybrid contribution -1.424 0.042 0.159 1.433 sum 4.149 -3.992 -12.019 13.327 Atomic orbital electron populations 1.22210 0.97470 1.01407 1.00983 1.21062 0.93238 0.84254 1.00087 1.44259 1.74388 1.12575 1.00709 1.18464 1.34084 0.93499 0.93849 0.94667 1.25939 0.99042 0.96907 0.97689 1.70128 1.36060 1.06785 1.43020 0.86588 0.82608 0.76892 0.81109 1.22007 1.22616 1.15099 1.20048 0.88387 0.96470 0.87244 1.27723 1.02165 1.00852 1.01693 1.21876 0.92404 0.99864 0.99136 1.66222 1.02963 1.23606 1.24263 1.28289 0.99713 1.03125 1.06361 1.96721 0.98166 1.97747 1.93639 1.84663 1.00844 1.29501 1.40413 0.90943 0.94848 0.92763 0.91786 0.93947 0.92578 0.88558 0.92746 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 10.24 71.98 0.74 -4.13 15 2 C 0.14 4.78 6.41 86.38 0.55 5.33 15 3 N -0.60 -25.27 2.03 -706.35 -1.44 -26.71 15 4 C -0.27 -14.07 9.78 84.03 0.82 -13.25 15 5 H 0.04 2.11 8.06 -2.91 -0.02 2.08 15 6 C 0.00 0.22 5.04 84.86 0.43 0.65 15 7 N -0.92 -53.44 13.97 21.65 0.30 -53.14 15 8 Si 0.90 40.90 26.49 68.60 1.82 42.72 15 9 H -0.29 -13.59 7.11 99.48 0.71 -12.88 15 10 H -0.30 -13.81 7.11 99.48 0.71 -13.10 15 11 H -0.23 -9.03 5.49 99.48 0.55 -8.48 15 12 C 0.21 7.77 4.39 85.63 0.38 8.15 15 13 C -0.20 -7.08 6.17 24.63 0.15 -6.93 15 14 C 0.02 0.64 11.25 83.64 0.94 1.58 15 15 N -0.45 -15.44 10.55 -198.59 -2.10 -17.54 15 16 C -0.02 -0.71 7.89 130.64 1.03 0.32 15 17 Br 0.06 1.53 34.13 -20.37 -0.70 0.84 15 18 S 0.20 7.14 23.22 -56.49 -1.31 5.82 15 19 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 20 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.06 1.89 8.11 -2.38 -0.02 1.87 15 23 H 0.04 1.56 8.00 -2.38 -0.02 1.54 15 24 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 25 H 0.10 3.01 8.09 -2.39 -0.02 2.99 15 26 H 0.05 2.25 4.44 -2.38 -0.01 2.24 15 27 H 0.20 5.08 8.06 -2.91 -0.02 5.05 15 Total: -1.00 -59.32 268.75 2.64 -56.68 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.02 Total: -0.41 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.04 Total: -8.27 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -3.23 Total: -97.38 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.82 Total: 42.72 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -1.31 Total: 5.82 kcal Atomic # 35 Polarization: 1.53 SS G_CDS: -0.70 Total: 0.84 kcal Total: -59.32 2.64 -56.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297255294.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.997 kcal (2) G-P(sol) polarization free energy of solvation -59.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds