Wall clock time and date at job start Tue Mar 31 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32832 * 123.46473 * 2 1 4 4 Br 1.89104 * 124.70322 * 359.94026 * 3 2 1 5 5 S 1.75501 * 110.59744 * 180.24440 * 3 2 1 6 6 C 1.70444 * 92.46319 * 359.71554 * 5 3 2 7 7 C 1.36123 * 110.82424 * 359.97438 * 6 5 3 8 8 C 1.46996 * 123.47282 * 180.02562 * 7 6 5 9 9 O 1.21597 * 119.99452 * 180.02562 * 8 7 6 10 10 O 1.34822 * 120.00383 * 359.74755 * 8 7 6 11 11 C 1.34883 * 117.00203 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00339 * 359.97438 * 11 10 8 13 13 C 1.38766 * 120.00186 * 179.97438 * 11 10 8 14 14 N 1.31452 * 119.99554 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99966 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47348 * 60.00105 * 15 13 11 17 17 H 1.48500 * 109.47017 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47230 * 299.99715 * 15 13 11 19 19 H 1.09004 * 109.47555 * 270.25219 * 1 2 3 20 20 H 1.08997 * 109.46901 * 30.26032 * 1 2 3 21 21 H 1.09000 * 109.46841 * 150.25714 * 1 2 3 22 22 H 1.08002 * 124.58224 * 179.97438 * 6 5 3 23 23 H 0.97001 * 119.99643 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2395 1.1081 0.0000 4 35 1.5362 2.8635 -0.0016 5 16 3.9504 0.7173 -0.0070 6 6 3.6426 -0.9591 -0.0014 7 6 2.3039 -1.2053 0.0060 8 6 1.7283 -2.5579 0.0128 9 8 0.5213 -2.7049 0.0188 10 8 2.5386 -3.6354 0.0066 11 6 1.9462 -4.8472 0.0128 12 1 0.8688 -4.9216 0.0227 13 6 2.7210 -5.9984 0.0065 14 7 4.0323 -5.9079 -0.0060 15 14 1.9005 -7.6764 0.0158 16 1 1.0428 -7.8148 -1.1884 17 1 2.9409 -8.7361 0.0075 18 1 1.0658 -7.8126 1.2364 19 1 -0.3634 0.0045 1.0277 20 1 -0.3633 0.8876 -0.5179 21 1 -0.3633 -0.8923 -0.5098 22 1 4.4065 -1.7226 -0.0035 23 1 4.5740 -6.7126 -0.0108 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306162962.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:05 Heat of formation + Delta-G solvation = -70.125065 kcal Electronic energy + Delta-G solvation = -13103.910462 eV Core-core repulsion = 10475.699519 eV Total energy + Delta-G solvation = -2628.210943 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.940 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17367 -38.90140 -37.02428 -34.37373 -33.30094 -31.35667 -28.58778 -27.40816 -25.45399 -22.48525 -19.96665 -19.91313 -18.63698 -18.31618 -16.72644 -16.67391 -16.16934 -15.25708 -15.12130 -14.49692 -14.33005 -13.74899 -13.61251 -13.31998 -13.18197 -12.99508 -12.43141 -12.23157 -12.16888 -12.03733 -11.99506 -11.31143 -10.98036 -10.71996 -9.82492 -9.44988 -8.57903 -6.34466 -0.50320 -0.06464 0.59801 0.60525 0.69213 1.34561 1.42851 1.50322 2.10522 2.14043 2.77403 2.99081 3.66891 4.10919 4.20963 4.57222 4.63104 4.70581 4.81208 5.05630 5.12042 5.41588 5.79627 6.59809 6.87003 7.70743 8.62470 Molecular weight = 289.94amu Principal moments of inertia in cm(-1) A = 0.048055 B = 0.004431 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.528416 B = 6318.187402 C = 6885.556902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.021 4.021 3 C -0.251 4.251 4 Br 0.036 6.964 5 S 0.318 5.682 6 C -0.184 4.184 7 C -0.155 4.155 8 C 0.453 3.547 9 O -0.567 6.567 10 O -0.233 6.233 11 C -0.417 4.417 12 H 0.085 0.915 13 C -0.002 4.002 14 N -0.898 5.898 15 Si 1.019 2.981 16 H -0.261 1.261 17 H -0.259 1.259 18 H -0.261 1.261 19 H 0.081 0.919 20 H 0.091 0.909 21 H 0.070 0.930 22 H 0.180 0.820 23 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 17.631 -0.031 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.035 4.035 3 C -0.446 4.446 4 Br 0.119 6.881 5 S 0.585 5.415 6 C -0.323 4.323 7 C -0.171 4.171 8 C 0.301 3.699 9 O -0.467 6.467 10 O -0.142 6.142 11 C -0.493 4.493 12 H 0.102 0.898 13 C -0.203 4.203 14 N -0.535 5.535 15 Si 0.838 3.162 16 H -0.186 1.186 17 H -0.183 1.183 18 H -0.186 1.186 19 H 0.099 0.901 20 H 0.110 0.890 21 H 0.089 0.911 22 H 0.198 0.802 23 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.747 19.002 -0.042 19.017 hybrid contribution -1.401 -2.330 0.032 2.719 sum -0.654 16.672 -0.011 16.685 Atomic orbital electron populations 1.20743 0.87816 1.03920 1.03570 1.19786 0.98373 0.88568 0.96771 1.25870 1.01104 0.96048 1.21595 1.96643 1.84963 1.08529 1.97976 1.82448 0.99135 0.92594 1.67348 1.26206 0.99637 1.04969 1.01507 1.19287 0.93247 0.90637 1.13947 1.20833 0.85223 0.86076 0.77744 1.90563 1.16603 1.87361 1.52136 1.83928 1.39264 1.14433 1.76531 1.21457 0.93250 0.80008 1.54581 0.89772 1.26557 0.96118 1.03070 0.94577 1.70058 1.05374 1.31860 1.46233 0.84661 0.77897 0.73855 0.79816 1.18584 1.18281 1.18595 0.90085 0.89005 0.91113 0.80228 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.32 9.24 71.24 0.66 -2.66 14 2 C -0.02 -0.74 6.01 -19.45 -0.12 -0.85 14 3 C -0.25 -6.98 6.87 66.64 0.46 -6.52 14 4 Br 0.04 0.76 32.89 -20.37 -0.67 0.09 14 5 S 0.32 7.82 23.02 -56.49 -1.30 6.52 14 6 C -0.18 -6.37 10.55 67.33 0.71 -5.66 14 7 C -0.15 -6.43 5.98 -19.88 -0.12 -6.54 14 8 C 0.45 24.02 7.86 70.12 0.55 24.57 14 9 O -0.57 -31.64 13.46 19.52 0.26 -31.38 14 10 O -0.23 -13.92 9.39 10.12 0.10 -13.83 14 11 C -0.42 -25.38 9.65 67.95 0.66 -24.72 14 12 H 0.08 5.17 6.86 -2.91 -0.02 5.15 14 13 C 0.00 -0.14 5.49 84.88 0.47 0.33 14 14 N -0.90 -52.37 13.67 21.63 0.30 -52.07 14 15 Si 1.02 43.06 29.55 68.60 2.03 45.09 14 16 H -0.26 -10.65 7.11 99.48 0.71 -9.94 14 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 14 18 H -0.26 -10.66 7.11 99.48 0.71 -9.95 14 19 H 0.08 2.51 8.14 -2.38 -0.02 2.49 14 20 H 0.09 2.41 7.31 -2.39 -0.02 2.39 14 21 H 0.07 2.74 6.03 -2.39 -0.01 2.72 14 22 H 0.18 6.41 8.02 -2.91 -0.02 6.39 14 23 H 0.28 14.80 8.31 -92.71 -0.77 14.03 14 Total: -1.00 -68.93 249.64 5.23 -63.70 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.26 Total: 3.95 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.26 Total: -22.07 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.30 Total: -52.07 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: 0.36 Total: -45.21 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 7.82 SS G_CDS: -1.30 Total: 6.52 kcal Atomic # 35 Polarization: 0.76 SS G_CDS: -0.67 Total: 0.09 kcal Total: -68.93 5.23 -63.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306162962.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.428 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds