Wall clock time and date at job start Tue Mar 31 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36771 * 120.00406 * 2 1 4 4 H 1.08000 * 120.00378 * 204.47865 * 3 2 1 5 5 C 1.39089 * 120.00006 * 24.19187 * 3 2 1 6 6 N 1.31337 * 119.99596 * 23.29640 * 5 3 2 7 7 Si 1.86799 * 119.99915 * 203.29973 * 5 3 2 8 8 H 1.48499 * 109.47198 * 90.00389 * 7 5 3 9 9 H 1.48504 * 109.46850 * 210.00224 * 7 5 3 10 10 H 1.48498 * 109.47133 * 329.99815 * 7 5 3 11 11 C 1.34782 * 119.99476 * 179.97438 * 2 1 3 12 12 O 1.21687 * 119.99434 * 182.04911 * 11 2 1 13 13 C 1.46993 * 120.00247 * 2.04795 * 11 2 1 14 14 N 1.30660 * 125.53249 * 171.31583 * 13 11 2 15 15 C 1.30684 * 115.90063 * 179.97438 * 14 13 11 16 16 C 1.34398 * 115.75566 * 359.97438 * 15 14 13 17 17 Br 1.89098 * 125.45391 * 180.02562 * 16 15 14 18 18 S 1.71068 * 109.09328 * 359.75135 * 16 15 14 19 19 H 1.09003 * 109.47217 * 23.65192 * 1 2 3 20 20 H 1.08998 * 109.47684 * 143.65322 * 1 2 3 21 21 H 1.09000 * 109.47609 * 263.65422 * 1 2 3 22 22 H 0.97003 * 120.00054 * 179.97438 * 6 5 3 23 23 H 1.07997 * 122.12205 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1844 0.0000 4 1 3.1561 1.2265 -0.3875 5 6 1.5452 2.3361 0.4936 6 7 0.5547 2.2424 1.3510 7 14 2.1430 4.0160 -0.0631 8 1 1.3865 4.4357 -1.2700 9 1 1.9271 5.0037 1.0247 10 1 3.5906 3.9442 -0.3862 11 6 2.1388 -1.1673 0.0005 12 8 3.3551 -1.1676 0.0382 13 6 1.4045 -2.4399 -0.0444 14 7 1.9401 -3.6202 -0.2090 15 6 1.1083 -4.6282 -0.2188 16 6 -0.1890 -4.3164 -0.0575 17 35 -1.6188 -5.5535 -0.0271 18 16 -0.3390 -2.6220 0.1237 19 1 -0.3634 0.9414 -0.4123 20 1 -0.3634 -0.8277 -0.6090 21 1 -0.3634 -0.1136 1.0213 22 1 0.1339 3.0456 1.6956 23 1 1.4423 -5.6470 -0.3483 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306511979.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:27 Heat of formation + Delta-G solvation = 8.699067 kcal Electronic energy + Delta-G solvation = -13299.287738 eV Core-core repulsion = 10706.787617 eV Total energy + Delta-G solvation = -2592.500121 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.08985 -39.96763 -36.85783 -34.06593 -33.31996 -30.45440 -28.60157 -27.71327 -25.94771 -23.09503 -20.09185 -19.76446 -19.10706 -17.76777 -17.13415 -16.57189 -16.30811 -15.87378 -15.19824 -14.79084 -14.37084 -14.02564 -13.95595 -13.47648 -12.98103 -12.57955 -12.39306 -12.35252 -12.11597 -11.41277 -11.25769 -11.09579 -10.49176 -10.39830 -9.87807 -9.86308 -8.57766 -6.10091 -0.98429 -0.28013 0.48881 0.58776 1.22175 1.46193 1.49797 1.58121 2.13319 2.23224 2.55314 2.92742 3.47898 3.82254 4.08701 4.14517 4.63193 4.85351 4.97430 5.34396 5.83439 6.20882 6.52601 6.93142 7.10687 7.72725 8.47332 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.045829 B = 0.004734 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.822579 B = 5912.976448 C = 6433.173832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.419 5.419 3 C -0.346 4.346 4 H 0.082 0.918 5 C 0.014 3.986 6 N -0.864 5.864 7 Si 0.996 3.004 8 H -0.257 1.257 9 H -0.270 1.270 10 H -0.274 1.274 11 C 0.480 3.520 12 O -0.609 6.609 13 C 0.006 3.994 14 N -0.454 5.454 15 C 0.067 3.933 16 C -0.313 4.313 17 Br 0.048 6.952 18 S 0.301 5.699 19 H 0.094 0.906 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.287 0.713 23 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 -10.259 -2.451 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.136 5.136 3 C -0.475 4.475 4 H 0.100 0.900 5 C -0.193 4.193 6 N -0.499 5.499 7 Si 0.818 3.182 8 H -0.182 1.182 9 H -0.195 1.195 10 H -0.199 1.199 11 C 0.268 3.732 12 O -0.496 6.496 13 C -0.268 4.268 14 N -0.171 5.171 15 C -0.093 4.093 16 C -0.514 4.514 17 Br 0.131 6.869 18 S 0.557 5.443 19 H 0.112 0.888 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.362 -9.943 -2.193 16.015 hybrid contribution 1.082 -0.134 -0.151 1.100 sum -11.280 -10.077 -2.344 15.306 Atomic orbital electron populations 1.21928 0.79422 1.01714 1.02201 1.43669 1.06782 1.04277 1.58829 1.19729 1.01557 0.84340 1.41889 0.89965 1.26243 0.96518 1.03341 0.93194 1.70009 1.23953 1.32666 1.23311 0.84903 0.78886 0.75700 0.78736 1.18170 1.19502 1.19924 1.17083 0.86892 0.82152 0.87106 1.90633 1.14456 1.86222 1.58310 1.27595 0.95038 0.96599 1.07552 1.66815 1.37405 0.98086 1.14772 1.22116 0.86697 1.00147 1.00385 1.28186 0.99515 1.04435 1.19267 1.96672 1.38492 1.54000 1.97766 1.84320 1.05180 0.93687 1.61094 0.88761 0.91780 0.90872 0.90277 0.78274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.70 7.34 127.77 0.94 4.64 14 2 N -0.42 -21.14 2.99 -663.14 -1.99 -23.12 14 3 C -0.35 -18.64 9.15 84.13 0.77 -17.87 14 4 H 0.08 4.78 7.53 -2.91 -0.02 4.75 14 5 C 0.01 0.69 4.76 84.97 0.40 1.09 14 6 N -0.86 -41.30 11.53 21.69 0.25 -41.05 14 7 Si 1.00 38.14 29.61 68.60 2.03 40.17 14 8 H -0.26 -9.20 7.11 99.48 0.71 -8.49 14 9 H -0.27 -9.86 7.11 99.48 0.71 -9.15 14 10 H -0.27 -10.92 7.11 99.48 0.71 -10.22 14 11 C 0.48 25.34 7.61 86.54 0.66 26.00 14 12 O -0.61 -37.55 16.80 -4.31 -0.07 -37.62 14 13 C 0.01 0.25 7.23 87.16 0.63 0.88 14 14 N -0.45 -18.99 10.60 -190.39 -2.02 -21.01 14 15 C 0.07 2.12 11.19 83.98 0.94 3.06 14 16 C -0.31 -8.88 6.82 66.94 0.46 -8.42 14 17 Br 0.05 1.03 34.08 -20.37 -0.69 0.33 14 18 S 0.30 9.40 18.08 -56.49 -1.02 8.37 14 19 H 0.09 3.78 6.94 -2.39 -0.02 3.76 14 20 H 0.07 2.19 4.43 -21.28 -0.09 2.10 14 21 H 0.07 2.90 7.68 -2.39 -0.02 2.88 14 22 H 0.29 12.51 8.31 -92.71 -0.77 11.74 14 23 H 0.20 4.99 8.06 -2.91 -0.02 4.96 14 Total: -1.00 -64.67 242.04 2.46 -62.21 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.18 Total: 2.34 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 4.80 Total: 9.38 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -3.75 Total: -85.19 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.07 Total: -37.62 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: 9.40 SS G_CDS: -1.02 Total: 8.37 kcal Atomic # 35 Polarization: 1.03 SS G_CDS: -0.69 Total: 0.33 kcal Total: -64.67 2.46 -62.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306511979.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.912 kcal (2) G-P(sol) polarization free energy of solvation -64.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds